Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I1 R1
|
144 |
141.8 |
4677362 |
93.6% |
4378010 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,631,501 |
C→T |
pseudogene (785/1284 nt) |
ydfJ ← |
pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,631,501 | 0 | C | T | 99.2%
| 507.7
/ NA
| 132 | pseudogene (785/1284 nt) | ydfJ | pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (57/74); minor base G (1/0); total (58/74) |
| Fisher's exact test for biased strand distribution p-value = 4.39e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 132 total aligned reads displayed.
TAATGGTGCTCGGGGCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATT > NC_000913/1631355‑1631648
|
tAATGGTGCTCGGGGCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCg > 1:576398/1‑149 (MQ=255)
aTGGTGCTCGGGGCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGaa < 1:232070/151‑1 (MQ=255)
aTGGTGCTCGGGGCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGaa < 1:898103/151‑1 (MQ=255)
gTGCTCGGGGCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATca < 1:539729/151‑2 (MQ=255)
gTGCTCGGGGCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCg > 1:638634/1‑151 (MQ=255)
cGGGGCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTg > 1:556269/1‑151 (MQ=255)
ggggCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTg > 1:257144/1‑150 (MQ=255)
ggCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGatc < 1:1139424/151‑1 (MQ=255)
gCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGatca < 1:179821/151‑1 (MQ=255)
cATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGatcat < 3:15034/151‑1 (MQ=255)
aTAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGatcatc > 1:1546716/1‑151 (MQ=255)
aGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCaa < 2:1235380/151‑1 (MQ=255)
gCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAAt < 2:1001837/151‑1 (MQ=255)
ttATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATTCa < 1:1442712/150‑1 (MQ=255)
tCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTg > 3:177997/1‑151 (MQ=255)
tCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTg > 2:923211/1‑151 (MQ=255)
aCAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTg < 2:1128548/148‑1 (MQ=255)
aaTGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTgg > 1:1140892/1‑150 (MQ=255)
aaTGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGa < 4:453702/151‑1 (MQ=255)
tGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAAt > 1:1391306/1‑151 (MQ=255)
tGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAAt > 1:407721/1‑151 (MQ=255)
aTAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTg < 4:232225/151‑1 (MQ=255)
aaGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTg < 2:1421622/151‑1 (MQ=255)
aGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGt > 2:634413/1‑151 (MQ=255)
cATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGtt > 3:40235/1‑150 (MQ=255)
aTTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTaa < 4:518068/151‑1 (MQ=255)
aTTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTaa < 2:1664788/151‑1 (MQ=255)
aTTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTa > 3:140464/1‑150 (MQ=255)
tGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTaaa < 4:398904/150‑1 (MQ=255)
ggCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACa < 2:448368/151‑1 (MQ=255)
ccATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAAt < 2:1714583/151‑1 (MQ=255)
ccATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAAt > 1:910948/1‑151 (MQ=255)
cATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAAt > 1:863554/1‑150 (MQ=255)
aTGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATaa < 2:466591/151‑1 (MQ=255)
cAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTc < 2:1023458/151‑1 (MQ=255)
gCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTg < 2:638724/151‑1 (MQ=255)
cacaATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGc > 4:187548/1‑151 (MQ=255)
aaTCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACt > 2:582759/1‑151 (MQ=255)
aaTCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACt < 2:301506/151‑1 (MQ=255)
aaTCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACt > 2:1474044/1‑151 (MQ=255)
aaTCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACt < 3:326269/151‑1 (MQ=255)
aaTCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACt < 1:1269954/151‑1 (MQ=255)
aaTCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACt > 1:1280925/1‑151 (MQ=255)
aaTCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACt < 1:266860/151‑1 (MQ=255)
aTCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACt > 2:413783/1‑150 (MQ=255)
aTCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACt > 2:1412381/1‑150 (MQ=255)
gcgGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAAt < 3:334953/151‑1 (MQ=255)
gcgGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAAt > 2:201947/1‑151 (MQ=255)
cgGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAAt > 1:530871/1‑150 (MQ=255)
cgGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATa < 2:1678145/151‑1 (MQ=255)
ggAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAg < 2:317962/151‑1 (MQ=255)
gAGGTATTCATAATAATATACGGCATCCGGCGACCAATGTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACGGATCACCAATGCATCTGTTGGAATTGCTGTGTTAAACAATAAGGGCTGCACTAAATat < 1:762175/150‑2 (MQ=255)
ggTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCt < 3:81146/151‑1 (MQ=255)
ggTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCt < 4:422285/151‑1 (MQ=255)
tATTCATAATAATATACGGGGTGCGGGGACAAATTTTATCGGATAACCAACCAAGGAACGTAATGGACATAAAGTCGAGAATCGAAATGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCAATAAATAGCCtac > 1:304492/1‑149 (MQ=255)
aTTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGc < 3:443253/150‑1 (MQ=255)
aTTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGc > 2:241431/1‑150 (MQ=255)
aTTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCa < 2:877352/151‑1 (MQ=255)
ataataataTACGGGGTCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGa < 4:504155/151‑1 (MQ=255)
ataataataTACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGa < 3:14072/151‑1 (MQ=255)
ataCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTg > 2:562065/1‑150 (MQ=255)
ataCGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTg < 4:476414/150‑1 (MQ=255)
taCGCGGTCCGGCGACCAATTTTATCGGCTAACCAACCAAGCAACGGAGTGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGATACACAATAACGTGTGCACTAAATATCCTGCAAGGAAAGTCt > 1:1581825/1‑148 (MQ=255)
ggATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTa < 1:1005259/150‑1 (MQ=255)
tCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAAccc > 4:125510/1‑151 (MQ=255)
ccGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCg < 3:97111/151‑1 (MQ=255)
ccGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCg > 2:399049/1‑151 (MQ=255)
cGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCgg < 1:170934/151‑1 (MQ=255)
gACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGtt > 4:218799/1‑151 (MQ=255)
gACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGtt < 2:63384/151‑1 (MQ=255)
ccAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTAc > 4:47935/1‑151 (MQ=255)
ccAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTAc > 1:1281197/1‑151 (MQ=255)
aTTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCg < 1:937314/151‑1 (MQ=255)
ttATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGcc < 1:450998/150‑1 (MQ=255)
ttATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCt > 2:743321/1‑151 (MQ=255)
ttATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCt > 1:175553/1‑151 (MQ=255)
ttATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCt > 2:194818/1‑151 (MQ=255)
ttCGGATAACCAACCAAGAAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCTATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGACTGAATTAACCCGGAGTTACCCGCCTg > 1:1488860/2‑150 (MQ=255)
aTCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTg > 4:530402/1‑150 (MQ=255)
aTCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTg < 2:1663385/150‑1 (MQ=255)
aTCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTg > 2:1023870/1‑150 (MQ=255)
aTCGGATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGa < 2:1317066/151‑1 (MQ=255)
ggATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATNCNTNNNTTGGAATTGCTTTGTTAAACNATNNNNNNNGCACTAAATNNCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCa < 2:810397/151‑1 (MQ=255)
ggATAACCAACCAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCa < 1:879278/151‑1 (MQ=255)
aTAACCAACCACGGAACGGAATGGTCATAAAGTCGAGAATCGAACTTATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACTTCTCCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGTGTTACCCGCCTGACCaa > 1:159329/1‑150 (MQ=255)
aaccaaccAAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAAc < 3:560870/151‑1 (MQ=255)
accaaccaAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACg < 2:1330406/151‑1 (MQ=255)
accaaccaAGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACg < 1:650892/151‑1 (MQ=255)
caaccaaGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGc > 1:1042813/1‑150 (MQ=255)
ccaaGGAACGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGcc < 3:218817/151‑1 (MQ=255)
cGGAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTgcc > 2:746887/1‑151 (MQ=255)
ggAATGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTgcca < 2:1291332/151‑1 (MQ=255)
aaTGGTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTgccagc < 4:411362/151‑1 (MQ=255)
aaTGGTAATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTGTGTTAAACAATAACGTCTGCACAAAATAGCCTGCAAGGAAAGTCTGAATTAACCCCGAGTTACCCGCCTGACCAAAACGCAGCCCCGTTgccag < 1:358225/150‑1 (MQ=255)
ggTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTgccagcca < 1:1412227/150‑1 (MQ=255)
gTCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGa < 2:1310569/151‑1 (MQ=255)
tCATAAAGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGa > 1:1573713/1‑150 (MQ=255)
aaaGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGa < 1:745089/150‑1 (MQ=255)
aaaGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGAt > 2:626085/1‑151 (MQ=255)
aaGTCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGAtt < 2:699867/151‑1 (MQ=255)
|
TAATGGTGCTCGGGGCATAGCTTTTATCTACAATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATT > NC_000913/1631355‑1631648
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
