Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I3 R1 143 109.6 3434427 98.5% 3382910 150.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,317,816 A→G R687R (CGT→CGC)  rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,317,8160AG99.1% 431.2 / ‑4.0 115R687R (CGT→CGC) rcsChybrid sensory kinase in two‑component regulatory system with RcsB and YojN
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (54/60);  total (54/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01

Only 100 of 116 total aligned reads displayed.

CGTATGTTGTAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATACGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGA  >  NC_000913/2317668‑2317963
                                                                                                                                                    |                                                                                                                                                   
cGTATGTTGTAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCg                                                                                                                                                   >  1:991335/1‑151 (MQ=255)
cGTATGTTGTAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCg                                                                                                                                                   >  1:223432/1‑151 (MQ=255)
  tATGTTGTAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATgcgc                                                                                                                                                  >  2:124302/1‑150 (MQ=255)
   aTGTTGTAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCAc                                                                                                                                                >  2:316724/1‑151 (MQ=255)
     gttgtAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGACCCGACAGGGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACg                                                                                                                                               <  1:1244197/150‑1 (MQ=255)
     gttgtAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACg                                                                                                                                               <  1:1221001/150‑1 (MQ=255)
      ttgtAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGt                                                                                                                                             >  1:1452625/1‑151 (MQ=255)
        gtAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGCACTGAGCGCCGTACAACGGAATGCGCACGGTa                                                                                                                                            <  2:933718/150‑1 (MQ=255)
         tAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTaa                                                                                                                                           >  1:1683417/1‑150 (MQ=255)
                gaTGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTg                                                                                                                                   >  1:30714/1‑151 (MQ=255)
                      gctgcgctgcAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCAtt                                                                                                                             <  1:319811/151‑1 (MQ=255)
                      gctgcgctgcAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCAtt                                                                                                                             <  1:1155700/151‑1 (MQ=255)
                         gcgctgcAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTccc                                                                                                                          >  1:1031247/1‑151 (MQ=255)
                         gcgctgcAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTccc                                                                                                                          <  1:1147364/151‑1 (MQ=255)
                                aaaCTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTg                                                                                                                   >  2:1257972/1‑151 (MQ=255)
                                 aaCTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGa                                                                                                                  <  1:886175/151‑1 (MQ=255)
                                     ggTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAAt                                                                                                                <  2:479823/149‑1 (MQ=255)
                                     ggTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCt                                                                                                              >  2:617418/1‑151 (MQ=255)
                                      gTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTa                                                                                                             <  2:539097/151‑1 (MQ=255)
                                          ccAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCga                                                                                                         <  1:1025405/151‑1 (MQ=255)
                                           cAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCgag                                                                                                        <  1:130890/151‑1 (MQ=255)
                                           cAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCg                                                                                                          >  2:532801/1‑149 (MQ=255)
                                            aGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCgaga                                                                                                       <  2:52455/151‑1 (MQ=255)
                                            aGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCg                                                                                                          >  2:1616909/1‑148 (MQ=255)
                                            aGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCg                                                                                                          >  1:1198282/1‑148 (MQ=255)
                                             ggAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGat                                                                                                      <  2:1026861/151‑1 (MQ=255)
                                             ggAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGat                                                                                                      <  2:1005095/151‑1 (MQ=255)
                                              gAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGat                                                                                                      >  2:359462/1‑150 (MQ=255)
                                               aaatGACAGAGCGACGCATTGCGGACCGACAGCAAGAAAAGTTAACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGatat                                                                                                    >  2:911957/4‑151 (MQ=255)
                                                    aCAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCg                                                                                               <  2:688596/151‑1 (MQ=255)
                                                         gCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCcat                                                                                          <  1:1512948/151‑1 (MQ=255)
                                                           gACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCcatc                                                                                         >  2:466376/1‑150 (MQ=255)
                                                             cGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATg                                                                                      >  1:560676/1‑151 (MQ=255)
                                                                   gCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGAt                                                                                 <  2:502096/150‑1 (MQ=255)
                                                                   gCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGAt                                                                                 <  1:124292/150‑1 (MQ=255)
                                                                   gCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGAt                                                                                 <  2:585780/150‑1 (MQ=255)
                                                                    cGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGAt                                                                                 <  2:677625/149‑1 (MQ=255)
                                                                    cGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGAt                                                                                 <  2:176950/149‑1 (MQ=255)
                                                                      gACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAg                                                                              >  2:689839/1‑150 (MQ=255)
                                                                       aCCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGtt                                                                            >  2:447014/1‑151 (MQ=255)
                                                                        ccGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGttt                                                                           <  1:1427053/151‑1 (MQ=255)
                                                                         cGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGtttt                                                                          >  2:385089/1‑151 (MQ=255)
                                                                         cGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGtttt                                                                          >  2:1166066/1‑151 (MQ=255)
                                                                         cGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGtttt                                                                          <  1:1513318/151‑1 (MQ=255)
                                                                               ccagcAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCCGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTcaca                                                                     >  2:763674/1‑150 (MQ=255)
                                                                                cagcagCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAGCGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACaaa                                                                   <  1:1619731/151‑1 (MQ=255)
                                                                                cagcagCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACaaa                                                                   <  1:861082/151‑1 (MQ=255)
                                                                                cagcagCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACaa                                                                    >  1:1048166/1‑150 (MQ=255)
                                                                                 agcagcGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAAt                                                                  >  2:987202/1‑151 (MQ=255)
                                                                                  gcagcGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATc                                                                 <  2:1683530/151‑1 (MQ=255)
                                                                                    agcGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGc                                                               >  2:208732/1‑151 (MQ=255)
                                                                                     gcGTTTCCCACTCAACCCTTCCACGCCTTTTTCCTGCGGGTACTGGGCGCCGTAAAACGGAATGCGCACGGTAAATGGGCCGCCCATTCCCGGTTTTGAATTTACCGAGATACCGCCGCCCATCATGCTGATCAGTTTTTCAAAAATCGcc                                                              <  1:1211686/151‑1 (MQ=255)
                                                                                     gcGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGcc                                                              <  2:192853/151‑1 (MQ=255)
                                                                                      cGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGcca                                                             <  2:1007535/151‑1 (MQ=255)
                                                                                          tACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGccagacc                                                         >  1:834173/1‑151 (MQ=255)
                                                                                                 cAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCcagacccagacc                                                   <  2:621660/150‑1 (MQ=255)
                                                                                                 cAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCg                                                  <  1:17936/151‑1 (MQ=255)
                                                                                                  aaCCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCgg                                                 <  1:823761/151‑1 (MQ=255)
                                                                                                    cccTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTc                                               >  2:820332/1‑151 (MQ=255)
                                                                                                     ccTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTcc                                              >  1:879961/1‑151 (MQ=255)
                                                                                                        tCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTccc                                             <  2:1245300/149‑1 (MQ=255)
                                                                                                         ccACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCt                                           <  2:1501603/150‑1 (MQ=255)
                                                                                                         ccACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTg                                          <  2:14333/151‑1 (MQ=255)
                                                                                                         ccACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTg                                          >  1:364922/1‑151 (MQ=255)
                                                                                                           aCGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTgg                                         >  1:1242516/1‑150 (MQ=255)
                                                                                                            cGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGa                                        <  2:1031324/150‑1 (MQ=255)
                                                                                                            cGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGa                                        >  2:1408592/1‑150 (MQ=255)
                                                                                                            cGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGa                                        >  2:929475/1‑150 (MQ=255)
                                                                                                             gCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGaaa                                      <  2:209064/151‑1 (MQ=255)
                                                                                                             gCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGaa                                       >  2:298143/1‑150 (MQ=255)
                                                                                                               cTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAAtt                                    >  1:140903/1‑151 (MQ=255)
                                                                                                               cTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAAtt                                    >  1:210968/1‑151 (MQ=255)
                                                                                                                 tttttCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTa                                   <  2:719347/150‑1 (MQ=255)
                                                                                                                 tttttCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTa                                   <  1:316697/150‑1 (MQ=255)
                                                                                                                 tttttCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTa                                   <  2:563051/150‑1 (MQ=255)
                                                                                                                    ttCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCt                               >  1:615727/1‑151 (MQ=255)
                                                                                                                     tCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTg                              >  1:269837/1‑151 (MQ=255)
                                                                                                                     tCTGCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTg                              >  2:1300028/1‑151 (MQ=255)
                                                                                                                        gCGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTAc                           <  2:1326673/151‑1 (MQ=255)
                                                                                                                         cGGGTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACg                          <  1:1712669/151‑1 (MQ=255)
                                                                                                                          gggTACTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGc                         >  1:1098861/1‑151 (MQ=255)
                                                                                                                               cTGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGtt                    >  2:1282515/1‑151 (MQ=255)
                                                                                                                                tGAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTc                   >  2:251915/1‑151 (MQ=255)
                                                                                                                                 gAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTc                   <  1:754387/150‑1 (MQ=255)
                                                                                                                                 gAGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTc                   <  2:583169/150‑1 (MQ=255)
                                                                                                                                  aGCGCCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTcc                  <  2:227801/150‑1 (MQ=255)
                                                                                                                                  aGCGCCGTACAACGGAATACGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCg                 <  2:306073/151‑1 (MQ=255)
                                                                                                                                   gcgcCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGa                <  1:466109/151‑1 (MQ=255)
                                                                                                                                     gcCGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGAcc              <  1:1420852/151‑1 (MQ=255)
                                                                                                                                      ccGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCt             <  2:919387/151‑1 (MQ=255)
                                                                                                                                      ccGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCt             >  1:1709451/1‑151 (MQ=255)
                                                                                                                                      ccGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCATTCCGACCt             <  2:466998/151‑1 (MQ=255)
                                                                                                                                       cGTACAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTg            <  1:383768/151‑1 (MQ=255)
                                                                                                                                           cAACGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGga          >  2:55839/1‑149 (MQ=255)
                                                                                                                                             aCGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGgaaga       >  2:1275400/1‑150 (MQ=255)
                                                                                                                                              cGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGgaaga       >  2:907601/1‑149 (MQ=255)
                                                                                                                                              cGGAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGaagaag     <  1:142807/151‑1 (MQ=255)
                                                                                                                                               ggAATGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAgg    >  1:681338/1‑151 (MQ=255)
                                                                                                                                                 aaTGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAggg   <  2:1482149/150‑1 (MQ=255)
                                                                                                                                                 aaTGCGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGa  <  1:1140571/151‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CGTATGTTGTAACGACGATGCCGCTGCGCTGCAAACTGGTTTCCAGGAACTGACAGAGCGACGCATTGCGGACCGCCAGCCAGCAGCGTTTACCACTCAACCCTTCCACGCCTTTTTTCTGCGGGTACTGAGCGCCGTACAACGGAATACGCACGGTAAACTGGCTGCCCATTCCCGGTTCTGAATCTACCGAGATATCGCCGTCCATCATGCTGATCAGTTTTTCACAAATCGCCAGACCCAGACCGGTCCCCTGGAAATTACGCTGTACGCCCGTTCCGACCTGGAAGAAGGGA  >  NC_000913/2317668‑2317963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A