Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F50 I1 R1	141	76.7	2402765	98.4%	2364320	150.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	999,721	A→G	D169G (GAT→GGT)	elfC →	putative outer membrane fimbrial subunit export usher protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	999,721	0	A	G	100.0%	247.3 / NA	66	D169G (GAT→GGT)	elfC	putative outer membrane fimbrial subunit export usher protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (30/36); total (30/36)

AAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGATTGCGCAAC  >  NC_000913/999579‑999863

aaacaaGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGAGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGa                                                                                                                                        <  1:764171/151‑1 (MQ=255)

     aGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAAc                                                                                                                                   <  1:886584/151‑1 (MQ=255)

       cGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAAcgc                                                                                                                                 <  1:960297/151‑1 (MQ=255)

           tgtgCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCt                                                                                                                              >  1:796300/1‑150 (MQ=255)

            gtgCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTa                                                                                                                             <  2:741547/150‑1 (MQ=255)

            gtgCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTAt                                                                                                                            <  2:903544/151‑1 (MQ=255)

              gCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTa                                                                                                                          <  1:1164016/151‑1 (MQ=255)

                     gCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGat                                                                                                                   <  1:23011/151‑1 (MQ=255)

                      cGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGata                                                                                                                  <  1:383944/151‑1 (MQ=255)

                       ggAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGatat                                                                                                                 >  2:814557/1‑151 (MQ=255)

                              attCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGttt                                                                                                           <  2:1172027/150‑1 (MQ=255)

                                 ccGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCg                                                                                                       >  1:827427/1‑151 (MQ=255)

                                  cGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTTCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCgg                                                                                                      >  2:977007/1‑151 (MQ=255)

                                   ggATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCggg                                                                                                     >  2:252482/1‑151 (MQ=255)

                                   ggATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCggg                                                                                                     >  2:392346/1‑151 (MQ=255)

                                     aTGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGc                                                                                                   <  2:548306/151‑1 (MQ=255)

                                       gCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCt                                                                                                  <  2:637995/150‑1 (MQ=255)

                                           gCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAg                                                                                             <  2:505351/151‑1 (MQ=255)

                                            cGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGt                                                                                            >  1:910712/1‑151 (MQ=255)

                                             gTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGt                                                                                            >  1:311323/1‑150 (MQ=255)

                                               aaCGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTAtt                                                                                         <  2:741222/151‑1 (MQ=255)

                                                aCGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTTAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTc                                                                                        <  1:799429/151‑1 (MQ=255)

                                                aCGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTc                                                                                        <  2:90035/151‑1 (MQ=255)

                                                aCGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTc                                                                                        <  1:1093808/151‑1 (MQ=255)

                                                 cGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTc                                                                                        >  1:533076/1‑150 (MQ=255)

                                                 cGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCa                                                                                       <  1:1093389/151‑1 (MQ=255)

                                                  gTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCAt                                                                                      >  1:322040/1‑151 (MQ=255)

                                                         gtgAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAgcg                                                                               <  1:679683/151‑1 (MQ=255)

                                                             aTAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAgcgc                                                                              >  1:579470/1‑148 (MQ=255)

                                                              tAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGAc                                                                          >  1:816389/1‑151 (MQ=255)

                                                                aaCTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGAc                                                                          >  2:285549/1‑149 (MQ=255)

                                                                aaCTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAg                                                                        <  2:553664/151‑1 (MQ=255)

                                                                    ccGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTg                                                                      <  2:552761/149‑1 (MQ=255)

                                                                         tGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTgg                                                               >  1:103941/1‑151 (MQ=255)

                                                                          ggAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGCCAGTGATTCTgg                                                               <  1:1061229/150‑1 (MQ=255)

                                                                          ggAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCt                                                                 <  1:153916/148‑1 (MQ=255)

                                                                          ggAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTgg                                                               <  1:43319/150‑1 (MQ=255)

                                                                           gAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTgg                                                               >  2:794123/1‑149 (MQ=255)

                                                                           gAAATTTCAAGTCCGCAAAACGGCATCAAAAGTAAAGCCCGTGGGTATTTCCCCCCTGAACGTTGGGGTGAAAGGATCAACGCGCTATTACTTGGGTATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTg                                                                <  2:673342/148‑1 (MQ=255)

                                                                            aaaTTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCg                                                             >  2:247824/1‑150 (MQ=255)

                                                                            aaaTTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGa                                                            <  2:928919/151‑1 (MQ=255)

                                                                                  cAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCt                                                       <  2:7868/150‑1 (MQ=255)

                                                                                  cAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCt                                                       <  2:194356/150‑1 (MQ=255)

                                                                                   aGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTAt                                                     >  2:601536/1‑151 (MQ=255)

                                                                                   aGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTAt                                                     <  1:759273/151‑1 (MQ=255)

                                                                                      aCCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTAttt                                                   <  1:392343/150‑1 (MQ=255)

                                                                                            aaTCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAAt                                            >  2:173050/1‑151 (MQ=255)

                                                                                             aTCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAAtt                                           <  2:461738/151‑1 (MQ=255)

                                                                                                 ccATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTaa                                        >  2:72714/1‑150 (MQ=255)

                                                                                                  cATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAAc                                      <  1:476133/151‑1 (MQ=255)

                                                                                                    tCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAAc                                      >  2:877319/1‑149 (MQ=255)

                                                                                                    tCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAAc                                      >  2:595636/1‑149 (MQ=255)

                                                                                                     cAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAg                                    <  2:543998/150‑1 (MQ=255)

                                                                                                        aaGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGc                                >  2:1150866/1‑151 (MQ=255)

                                                                                                         aGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCg                               >  2:1124463/1‑151 (MQ=255)

                                                                                                            aaTGCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGtt                             >  2:1057879/1‑150 (MQ=255)

                                                                                                               gCCCGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAAtt                         <  2:907432/151‑1 (MQ=255)

                                                                                                                cccGTGGTTATGTCCCCCCTGAACGTTGGGGCGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAAttt                        >  2:1124701/1‑151 (MQ=255)

                                                                                                                 ccGTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAAttt                        >  1:601368/1‑150 (MQ=255)

                                                                                                                   gTGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAgg                     >  1:324537/1‑151 (MQ=255)

                                                                                                                    tGGTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGATATTGTCTGAATTTAAACAGTGGCGTTAATTTAgg                     <  2:419661/150‑1 (MQ=255)

                                                                                                                     ggTTATGTCCCCCCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGcc                   <  1:1063486/151‑1 (MQ=255)

                                                                                                                            tCCCACCTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGTAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGga             <  1:597676/150‑1 (MQ=255)

                                                                                                                               ccccTGAACGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGAtt         >  2:549984/1‑151 (MQ=255)

                                                                                                                                     aaCGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGATTGCGca    >  2:876840/1‑150 (MQ=255)

                                                                                                                                      aCGTTGGGGTGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGATTGCGcaac  >  2:983753/1‑151 (MQ=255)

AAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGATTGCGCAAC  >  NC_000913/999579‑999863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A