Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I1 R1 141 76.7 2402765 98.4% 2364320 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,764,710 T→C intergenic (‑324/+224) sufA ← / ← ydiH Fe‑S cluster assembly protein/uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,764,7100TC98.5% 225.5 / NA 66intergenic (‑324/+224)sufA/ydiHFe‑S cluster assembly protein/uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (39/26);  minor base A (0/1);  total (39/27)
Fisher's exact test for biased strand distribution p-value = 4.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01

GTTAGATAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAGGCGGTAGAT  >  NC_000913/1764562‑1764853
                                                                                                                                                      |                                                                                                                                               
gTTAGATAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGctt                                                                                                                                               <  1:69146/151‑1 (MQ=255)
gTTAGATAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGctt                                                                                                                                               <  2:1140368/151‑1 (MQ=255)
               ttatCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGgcg                                                                                                                                >  2:144273/1‑151 (MQ=255)
                     aaGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTAtc                                                                                                                          >  2:98902/1‑151 (MQ=255)
                     aaGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTAtc                                                                                                                          >  2:834627/1‑151 (MQ=255)
                     aaGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTAt                                                                                                                           <  2:568662/150‑1 (MQ=255)
                           cATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGTGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGc                                                                                                                    >  2:413584/1‑151 (MQ=255)
                            aTTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCa                                                                                                                   <  1:1008781/151‑1 (MQ=255)
                             ttAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCAc                                                                                                                  >  1:59322/1‑151 (MQ=255)
                              tAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCAct                                                                                                                 >  1:204794/1‑151 (MQ=255)
                               aaGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCActc                                                                                                                >  1:936139/1‑151 (MQ=255)
                                  gCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACtctc                                                                                                              >  1:1060888/1‑150 (MQ=255)
                                    tgtgATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGt                                                                                                           >  1:209393/1‑151 (MQ=255)
                                       gatgaAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGc                                                                                                        >  1:357924/1‑151 (MQ=255)
                                        atgaAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCt                                                                                                       <  2:566670/151‑1 (MQ=255)
                                          gaaaaagaaaaaGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCtt                                                                                                      <  2:483618/150‑1 (MQ=255)
                                           aaaaagaaaaagTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCtt                                                                                                      >  1:205701/1‑149 (MQ=255)
                                           aaaaagaaaaagTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCtt                                                                                                      >  2:984318/1‑149 (MQ=255)
                                            aaaagaaaaagTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGc                                                                                                   <  2:999415/151‑1 (MQ=255)
                                                gaaaaagTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCtt                                                                                               >  1:882180/1‑151 (MQ=255)
                                                 aaaaagTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTg                                                                                              >  1:205198/1‑151 (MQ=255)
                                                     agTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAgg                                                                                          <  1:204830/151‑1 (MQ=255)
                                                     agTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAgg                                                                                          >  1:596333/1‑151 (MQ=255)
                                                     agTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAgg                                                                                          >  1:614223/1‑151 (MQ=255)
                                                             tGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATa                                                                                   >  2:606342/1‑150 (MQ=255)
                                                              gAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATaa                                                                                  <  1:170409/150‑1 (MQ=255)
                                                              gAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAg                                                                                 <  1:680866/151‑1 (MQ=255)
                                                               aaaaTGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGa                                                                                <  1:195617/151‑1 (MQ=255)
                                                               aaaaTGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGa                                                                                <  1:214340/151‑1 (MQ=255)
                                                                aaaTGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGaa                                                                               <  2:47517/151‑1 (MQ=255)
                                                                    gACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGaataat                                                                           >  1:1072013/1‑151 (MQ=255)
                                                                      cTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAAtct                                                                         >  1:373967/1‑151 (MQ=255)
                                                                          ttAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCAt                                                                      >  2:544834/1‑150 (MQ=255)
                                                                             agagATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATaa                                                                    >  2:704893/1‑149 (MQ=255)
                                                                                  tAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAAc                                                             >  1:382234/1‑151 (MQ=255)
                                                                                    ggTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAAccc                                                           <  1:802942/151‑1 (MQ=255)
                                                                                    ggTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAAccc                                                           <  2:365310/151‑1 (MQ=255)
                                                                                     gTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACccg                                                          >  2:267287/1‑151 (MQ=255)
                                                                                       aaaaaaGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACccgcc                                                        >  1:310499/1‑151 (MQ=255)
                                                                                       aaaaaaGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACccgcc                                                        <  2:468078/151‑1 (MQ=255)
                                                                                        aaaaaGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACccgccg                                                       >  1:210348/1‑151 (MQ=255)
                                                                                         aaaaGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGt                                                      >  1:965175/1‑151 (MQ=255)
                                                                                           aaGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGttt                                                    <  2:427986/151‑1 (MQ=255)
                                                                                             gTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGtttt                                                   >  1:384813/1‑150 (MQ=255)
                                                                                              tGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTa                                                  >  1:341279/1‑150 (MQ=255)
                                                                                              tGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTa                                                  >  2:701023/1‑150 (MQ=255)
                                                                                               gCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAac                                                >  2:603495/1‑151 (MQ=255)
                                                                                                       cAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTg                                        >  1:202667/1‑151 (MQ=255)
                                                                                                        aaaaaTAAAAAACCCTTTAAT‑TCTGGGCGACACA‑GCTTAAGGGGCTTCTCCCCCACCCGCCTTTTATCTCCGCCCCTCTCGGTGGCTTAGCTTTGGAAGGGGCAAAAAAAATAATCCCAAAAAGCTACCCCGCCGTTTTAACACAAACTg                                        <  1:577819/148‑1 (MQ=255)
                                                                                                           aaTAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGAt                                    >  2:183805/1‑151 (MQ=255)
                                                                                                           aaTAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGAt                                    >  2:970076/1‑151 (MQ=255)
                                                                                                           aaTAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGAt                                    >  1:276660/1‑151 (MQ=255)
                                                                                                             tAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGAtt                                   >  1:465204/1‑150 (MQ=255)
                                                                                                              aaaaaacCCCTTAGG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTCCCCCATCCGGCGTTTATCTCCGGCCCTCTCAGTGGCTTAGCTCTTGAAGGGGCAATAAGAATAATCTCAAAAACCTACCCCGCCGTTTTAACACAAACTGCGATTa                                  <  2:526707/147‑1 (MQ=255)
                                                                                                                   aaCCCCTAAGTTCGGGGCGACACGGGCTTAA‑GGGCTTCTCCCCCACCCGGCGTTTATCCCCGCCACTCTCAGTGGTTTGGCTTTTGAGGGGGCAATAAAAATAATCTAAAAAAGCAAACCCGCCGTTTTAACACAAACTGCGATTAGtatt                             <  1:529715/151‑1 (MQ=255)
                                                                                                                    aCCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGtattat                           >  1:244072/1‑151 (MQ=255)
                                                                                                                        ttAAG‑TCTGTGCGACACAGGCTTAA‑GGGCTTCTCCCCCATCCGGCGCTTATCCCCGGCCCTCTCAGTGGTTTAGCTCTTGAAGGGGCAATAAGAATAATCTAATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTattatt                          <  2:279797/148‑1 (MQ=255)
                                                                                                                           agttCTGGGCGACACAGGCTAAA‑GGCCTTCTCCCCCACCCGGCTTTTATCCCCGCCCCTCTCAGTGTTTTAGTTTTTAAGGGGGAAATAAAAATATTTTCAAAAAGCTACCCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTg                      <  1:962314/147‑1 (MQ=255)
                                                                                                                           aG‑TTTGTGCGACACGGGCTAAA‑GGGCTTCTCCCCAACCCGGGCTTTCTCCCCGGCCCTTTCGGTGGTTTAGTTCTTTAGGGGGCGATAAGAAGAATCCAAAAAAGAAAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGaa                    <  2:729944/151‑1 (MQ=255)
                                                                                                                              tCTGTGCGACACAGGCTTAA‑GGTCTTCTCCCCCATCGGGCTTTTATCCCCGCCACTCTATTTGGCTTAGTTTTTGAAGGGGGAAAAAAAATAATCTCAAAAAGCTACCCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAAc                   <  1:83496/150‑1 (MQ=255)
                                                                                                                               cTGTGCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACa                  >  1:35240/1‑150 (MQ=255)
                                                                                                                                tgtgCGACACAGGCTTAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAat                >  2:854880/1‑151 (MQ=255)
                                                                                                                                 gtgCGACACAGGCTTAG‑GGGCTTCTCCCCCATCCGGCGTTTACCTCCGCCACTCTCAGTGGTTTGGCTTTGGAAGGGGCGATAAGAAAAACCTCAGAAAGCAAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAata               <  2:165288/151‑1 (MQ=255)
                                                                                                                                    cGACACAGGCTAAA‑GGGCTTCTCCCCCACCCGGCGTTTATCCCCGCCACTCTCAGTGGCTTAGCTTTTGAAGGGGCAATAAAAATAATCTCAAAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAatat              <  1:183803/149‑1 (MQ=255)
                                                                                                                                       cacgGGTTTAG‑GGGCTTCTCCCCCACCCGCCGCTTATCCCCGCCACTCTCGGTGGCTTGGCTCTTGAGGGGGCGATAAAAATATTCTCATAAAGTAAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAgg          <  2:856539/150‑1 (MQ=255)
                                                                                                                                        acaGGCTTAA‑GGGATTCTACCCCTCCCGGCTTTTATCCCCGGCACCCTAAGTGCTTTAGCTGTTGAAGGGCGAAAAAGAATAATCCTATAAAGCAAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAGGc         <  2:65719/150‑1 (MQ=255)
                                                                                                                                           ggtttAA‑GGGCTTCTCCCCCACCCGGCTCTTATCTCCGGCCCTCTCAGTGGTTTAGCTCTTGAGGGGGCGAAAAAATAAATCTAAAAAAGCTACCCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAGGCgg       <  2:951532/146‑1 (MQ=255)
                                                                                                                                               tAA‑GGGCTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAGGCGGTAGAt  >  1:595938/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                               
GTTAGATAATGGTTATTATCTAAGGAGCATTAAGGCTGTGATGAAAAAGAAAAAGTTGTATTGAAAATGACTATTTAAGAGATAGGTAAAAAAGTGCAGCGTTCAGAAATAAGAAAACCCTTAAG‑TCTGTGCGACACAGGCTTAA‑GGGTTTCTACCCCATCCGGCGCTTATCTCCGGCACTCTCAGTGGCTTAGCTCTTGAAGGGGCGATAAGAATAATCTCATAAAGCTAACCCGCCGTTTTAACACAAACTGCGATTAGTATTATTTTTGAACAATATCAGGCGGTAGAT  >  NC_000913/1764562‑1764853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A