Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I1 R1 141 76.7 2402765 98.4% 2364320 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,881,694 C→T R39H (CGC→CAC)  dmlR ← transcriptional activator of dmlA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,881,6940CT97.0% 244.6 / NA 66R39H (CGC→CAC) dmlRtranscriptional activator of dmlA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (32/32);  minor base G (2/0);  total (34/32)
Fisher's exact test for biased strand distribution p-value = 4.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAGAAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGCGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTACGGG  >  NC_000913/1881548‑1881840
                                                                                                                                                  |                                                                                                                                                  
cAGAAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCtt                                                                                                                                                <  2:649472/151‑1 (MQ=255)
 aGAAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTg                                                                                                                                               <  1:642659/151‑1 (MQ=255)
   aaaGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGtgcttgct                                                                                                                                             <  2:1170532/151‑1 (MQ=255)
    aaGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGGGCTTGCTg                                                                                                                                            >  1:1189712/1‑151 (MQ=255)
      gTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGAc                                                                                                                                          <  1:319516/151‑1 (MQ=255)
                catcTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCgg                                                                                                                                 >  2:276537/1‑150 (MQ=255)
                     gACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAAc                                                                                                                           <  1:177641/151‑1 (MQ=255)
                       ccGAGATCCTGCAAAAGCCGCTGCGCCCATTCATAAACCCGCCCTCCTTCTTCGGTAATGGTGAGGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGaa                                                                                                                             <  1:12301/147‑1 (MQ=255)
                       ccGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGc                                                                                                                         >  2:258046/1‑151 (MQ=255)
                                   aaaaTCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTcc                                                                                                              >  1:872628/1‑150 (MQ=255)
                                   aaaaTCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCg                                                                                                             >  2:345729/1‑151 (MQ=255)
                                     aaTCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGGGAAACGCCCAGTTCTTCCGcc                                                                                                           >  1:82585/1‑151 (MQ=255)
                                          gCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCAcggc                                                                                                      <  2:190628/151‑1 (MQ=255)
                                             gcgcCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACggcggc                                                                                                   <  1:943975/151‑1 (MQ=255)
                                              cgcCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACggcggc                                                                                                   >  2:876951/1‑150 (MQ=255)
                                                cccATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCaaa                                                                                                <  1:920427/151‑1 (MQ=255)
                                                   aTTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAAcc                                                                                             >  1:898248/1‑151 (MQ=255)
                                                    ttCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAAcc                                                                                             >  2:441149/1‑150 (MQ=255)
                                                       aTAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGcc                                                                                         <  1:288112/151‑1 (MQ=255)
                                                        tAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGGGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGccc                                                                                        >  1:461975/1‑151 (MQ=255)
                                                           aTCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGc                                                                                     <  1:989930/151‑1 (MQ=255)
                                                           aTCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGc                                                                                     <  1:1054496/151‑1 (MQ=255)
                                                              cGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCg                                                                                    >  1:1109166/1‑149 (MQ=255)
                                                                  ctcCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGccac                                                                              >  1:1144488/1‑151 (MQ=255)
                                                                   tcCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGccacc                                                                             >  1:388098/1‑151 (MQ=255)
                                                                    ccTTCTTCGGTAAAGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGccacca                                                                            <  1:817386/151‑1 (MQ=255)
                                                                       tcttcGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGc                                                                          >  2:806977/1‑150 (MQ=255)
                                                                         ttcGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCAt                                                                        >  2:919957/1‑150 (MQ=255)
                                                                          tcGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCAt                                                                        <  1:47456/149‑1 (MQ=255)
                                                                          tcGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCAt                                                                        <  1:258043/149‑1 (MQ=255)
                                                                          tcGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATa                                                                       <  1:321327/150‑1 (MQ=255)
                                                                          tcGGTAATGGTGACGCGGCGGGTGGTGCGGGGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATa                                                                       >  1:230802/1‑150 (MQ=255)
                                                                                     gACGCGGCGGGCGGCGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGGGCTTGCTGACGAACGCCGGGGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCaa                                                            >  1:607724/1‑150 (MQ=255)
                                                                                      aCGCGGCGGGTGGTGCGGTGTAACAACACAAAGTTTAGCGTTTGATCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAAt                                                          <  2:168651/151‑1 (MQ=255)
                                                                                       cgcgGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATc                                                         >  1:520738/1‑151 (MQ=255)
                                                                                       cgcgGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATc                                                         >  2:305709/1‑151 (MQ=255)
                                                                                         cggcggGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCAt                                                       >  1:263721/1‑151 (MQ=255)
                                                                                         cggcggGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCAt                                                       <  2:646767/151‑1 (MQ=255)
                                                                                          ggcggGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCAtt                                                      <  2:47184/151‑1 (MQ=255)
                                                                                           gcggGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTc                                                     <  2:1068720/151‑1 (MQ=255)
                                                                                             gggTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTc                                                     >  1:430896/1‑149 (MQ=255)
                                                                                                   tgCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCgg                                             >  1:1032740/1‑151 (MQ=255)
                                                                                                    gCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCgg                                             <  1:554736/150‑1 (MQ=255)
                                                                                                     cGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGt                                            >  2:1082263/1‑150 (MQ=255)
                                                                                                      ggTGTAACAACACCGCGTTTAGCTTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTaa                                          <  2:747712/151‑1 (MQ=255)
                                                                                                         gtAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAatt                                       <  1:476510/151‑1 (MQ=255)
                                                                                                         gtAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAat                                        <  2:840474/150‑1 (MQ=255)
                                                                                                          tAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAatt                                       >  1:446041/1‑150 (MQ=255)
                                                                                                           aacaacACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAattat                                     <  2:586051/151‑1 (MQ=255)
                                                                                                           aacaacACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAattat                                     >  2:1189308/1‑151 (MQ=255)
                                                                                                            acaacaCCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTCCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAattatt                                    <  1:185399/151‑1 (MQ=255)
                                                                                                             caacaCCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTc                                   >  2:670298/1‑151 (MQ=255)
                                                                                                                caccacGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATg                                >  1:820915/1‑151 (MQ=255)
                                                                                                                 accacGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATg                                >  2:334073/1‑150 (MQ=255)
                                                                                                                   cacGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGAtt                             <  1:1133106/151‑1 (MQ=255)
                                                                                                                       tttAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCgtg                         >  2:674389/1‑151 (MQ=255)
                                                                                                                              tttGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATg                  >  2:384066/1‑151 (MQ=255)
                                                                                                                                  cTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTc              >  2:291279/1‑151 (MQ=255)
                                                                                                                                   tCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTc              >  2:559565/1‑150 (MQ=255)
                                                                                                                                    ccAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCa             >  2:804343/1‑150 (MQ=255)
                                                                                                                                     cAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCAcc           <  2:552217/151‑1 (MQ=255)
                                                                                                                                      aGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCa          <  1:1177289/151‑1 (MQ=255)
                                                                                                                                      aGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCa          <  2:504994/151‑1 (MQ=255)
                                                                                                                                          aGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTa      <  1:975929/151‑1 (MQ=255)
                                                                                                                                           ggCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTAc     <  2:399626/151‑1 (MQ=255)
                                                                                                                                             cGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTACgg   >  1:155562/1‑151 (MQ=255)
                                                                                                                                              gATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTACggg  <  2:367833/151‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
CAGAAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGCGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTACGGG  >  NC_000913/1881548‑1881840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A