Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I2 R1 139 64.5 2139856 92.7% 1983646 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,881,694 C→T R39H (CGC→CAC)  dmlR ← transcriptional activator of dmlA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,881,6940CT100.0% 220.6 / NA 62R39H (CGC→CAC) dmlRtranscriptional activator of dmlA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (33/29);  total (33/29)

AAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGCGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTACGG  >  NC_000913/1881551‑1881839
                                                                                                                                               |                                                                                                                                                 
aaaGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGtgcttgct                                                                                                                                            >  1:1047877/1‑151 (MQ=255)
aaaGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGtgcttgct                                                                                                                                            <  2:861439/151‑1 (MQ=255)
 aaGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTg                                                                                                                                           <  2:160186/151‑1 (MQ=255)
    ttCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACg                                                                                                                                        >  1:900614/1‑151 (MQ=255)
              atcTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTg                                                                                                                              >  1:952237/1‑151 (MQ=255)
                  gACCGACATCCTGCAAAATCCGCTGCGCCCATTCATTAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGAGGTTCGGTGTAACAACACCCCGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAAc                                                                                                                          >  2:156712/1‑151 (MQ=255)
                  gACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGaa                                                                                                                            <  1:606239/149‑1 (MQ=255)
                     cGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGcc                                                                                                                       >  2:782926/1‑151 (MQ=255)
                      gACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGccc                                                                                                                      <  1:62986/151‑1 (MQ=255)
                           ccTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGttc                                                                                                                 <  2:490507/151‑1 (MQ=255)
                             tGCAAAATCCGTTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGttctt                                                                                                               >  1:19663/1‑151 (MQ=255)
                              gCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGttcttc                                                                                                              <  1:260010/151‑1 (MQ=255)
                              gCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGttcttc                                                                                                              <  1:514402/151‑1 (MQ=255)
                                 aaaTCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGc                                                                                                           >  1:670996/1‑151 (MQ=255)
                                  aaTCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGcc                                                                                                          >  1:813839/1‑151 (MQ=255)
                                  aaTCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGcc                                                                                                          >  1:1050388/1‑151 (MQ=255)
                                    tCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCAc                                                                                                        >  1:792742/1‑151 (MQ=255)
                                      cGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACTACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCAcgg                                                                                                      <  2:21061/151‑1 (MQ=255)
                                      cGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCAcgg                                                                                                      <  1:419948/151‑1 (MQ=255)
                                          gcgcCCATTCATAAATCCGCTCTCCTGCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACggcggc                                                                                                  <  2:585972/151‑1 (MQ=255)
                                           cgcCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCCCGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACggcggc                                                                                                  >  2:225808/1‑150 (MQ=255)
                                              ccATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGGGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCaaa                                                                                               >  2:154227/1‑150 (MQ=255)
                                               cATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAAc                                                                                             >  2:1034071/1‑151 (MQ=255)
                                                      aaaTCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCg                                                                                      <  1:3796/151‑1 (MQ=255)
                                                        aTCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCgg                                                                                     >  1:1891/1‑150 (MQ=255)
                                                        aTCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGc                                                                                    >  1:554496/1‑151 (MQ=255)
                                                           cGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAg                                                                                 <  2:310321/151‑1 (MQ=255)
                                                                 ccTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGccacca                                                                           <  2:338010/151‑1 (MQ=255)
                                                                     cttcGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTATCGTTTGCTCCAGCAAGGCGTTGTGCTTGATGACGAAAGACGGCGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAACCACCCGCa                                                                        >  2:633915/1‑150 (MQ=255)
                                                                         ggTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATaa                                                                     >  1:588100/1‑149 (MQ=255)
                                                                           tAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGAc                                                                 >  1:616478/1‑151 (MQ=255)
                                                                             aTGGTGACGCGGCTGGTGGGGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTGCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAg                                                                   <  2:540765/147‑1 (MQ=255)
                                                                             aTGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGAcgc                                                               <  2:695401/151‑1 (MQ=255)
                                                                                 tGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACgcgc                                                             >  1:817795/1‑149 (MQ=255)
                                                                                 tGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCa                                                            >  1:817162/1‑150 (MQ=255)
                                                                                            gtggtgCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACTAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATgcagca                                                <  2:791046/151‑1 (MQ=255)
                                                                                            gtggtgCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTcagca                                                <  1:53643/151‑1 (MQ=255)
                                                                                             tggtgCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTcagc                                                 >  1:1042865/1‑149 (MQ=255)
                                                                                                tgCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCgg                                            >  1:24985/1‑151 (MQ=255)
                                                                                                 gCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGt                                           <  1:600390/151‑1 (MQ=255)
                                                                                                   ggTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTaa                                         <  1:796580/151‑1 (MQ=255)
                                                                                                   ggTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTaa                                         <  1:885790/151‑1 (MQ=255)
                                                                                                    gtgtAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTaa                                         >  2:943110/1‑150 (MQ=255)
                                                                                                         acaacaCCACGCTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGCCAAAACCAGCACGCCGAGCCCCCAGCATAAAGACGCGCACATCACTCAGCAGCGGTAAattatt                                   >  2:680072/1‑151 (MQ=255)
                                                                                                          caacaCCACGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTc                                  >  1:654954/1‑151 (MQ=255)
                                                                                                          caacaCCACGTTTAGCGTGTGCTCAAGCAAGGCGATGTGCTGGCTGACGAAAGCCGGGGAAACGCTCAGCTCTTCCGCCCCGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAACACGCGGAAATCATTCTGCAGCGGTCAatgatt                                   >  2:268410/1‑150 (MQ=255)
                                                                                                                cacGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGAt                             <  2:326839/150‑1 (MQ=255)
                                                                                                                  cGTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCg                          <  1:310791/151‑1 (MQ=255)
                                                                                                                   gTTTAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTc                           <  2:920610/149‑1 (MQ=255)
                                                                                                                     ttAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCgtgt                       >  2:458861/1‑151 (MQ=255)
                                                                                                                     ttAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCgtgt                       >  2:181482/1‑151 (MQ=255)
                                                                                                                      tAGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGTCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCgtgt                       <  2:550502/150‑1 (MQ=255)
                                                                                                                       aGCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGttt                     <  2:952188/151‑1 (MQ=255)
                                                                                                                        gCGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGtttt                    >  2:397365/1‑151 (MQ=255)
                                                                                                                         cGTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTa                   <  2:464087/151‑1 (MQ=255)
                                                                                                                          gTTTGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTAt                  >  1:785698/1‑151 (MQ=255)
                                                                                                                           tttGCTCCAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATg                 >  1:785737/1‑151 (MQ=255)
                                                                                                                              gCTCCAACAAGTCTATGTGCTTGCTGACGAAAGCCGGTGAAACGCCCAATTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAACACGCGCAAATCATTCAGCCGCGGTAAATTATTCATGATTCGTGTTTTATGtt               <  2:800510/150‑1 (MQ=255)
                                                                                                                                 ccAGCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCAc           <  2:813793/151‑1 (MQ=255)
                                                                                                                                    gCAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAg        <  2:540469/151‑1 (MQ=255)
                                                                                                                                     cAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGt       >  2:988926/1‑151 (MQ=255)
                                                                                                                                     cAAGGCGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCCTCCGCCACGGCGGCAAAACCAGCCCGGTGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTGATGTTTCACCa         <  2:1006739/149‑1 (MQ=255)
                                                                                                                                          cGATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGCGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTACgg  >  2:749289/1‑151 (MQ=255)
                                                                                                                                           gATGTGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTACgg  >  2:649356/1‑150 (MQ=255)
                                                                                                                                               |                                                                                                                                                 
AAAGTTCGTCCATCATCTGACCGACATCCTGCAAAATCCGCTGCGCCCATTCATAAATCCGCTCTCCTTCTTCGGTAATGGTGACGCGGCGGGTGGTGCGGTGTAACAACACCACGTTTAGCGTTTGCTCCAGCAAGGCGATGCGCTTGCTGACGAACGCCGGTGAAACGCCCAGTTCTTCCGCCACGGCGGCAAAACCAGCCCGGCGAGCCACCAGCATAAAGACGCGCAAATCATTCAGCAGCGGTAAATTATTCATGATTCGTGTTTTATGTTTCACCAGTTACGG  >  NC_000913/1881551‑1881839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A