Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F50 I1 R1	141	76.7	2402765	98.4%	2364320	150.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,131,812	G→A	R87C (CGC→TGC)	wcaC ←	putative glycosyl transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,131,812	0	G	A	100.0%	263.7 / NA	67	R87C (CGC→TGC)	wcaC	putative glycosyl transferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (27/40); total (27/40)

GCAGCGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCGATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTGCCGCCTTTGCCGTA  >  NC_000913/2131671‑2131956

gCAGCGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTc                                                                                                                                         <  2:431962/151‑1 (MQ=255)

  aGCGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCAt                                                                                                                                       <  1:422508/151‑1 (MQ=255)

   gCGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCGCTTTTTCGCAAAAGCGCACCGCGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCAtt                                                                                                                                      <  1:661101/151‑1 (MQ=255)

     gTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTg                                                                                                                                     >  2:1188357/1‑150 (MQ=255)

      tCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGa                                                                                                                                    <  1:302246/150‑1 (MQ=255)

            ccagaGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGcc                                                                                                                             <  2:949681/151‑1 (MQ=255)

               gagTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCaa                                                                                                                           >  1:775173/1‑150 (MQ=255)

                   gACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAg                                                                                                                       <  2:708223/150‑1 (MQ=255)

                    aCGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGAt                                                                                                                     <  2:752232/151‑1 (MQ=255)

                      gTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATcg                                                                                                                   <  2:575597/151‑1 (MQ=255)

                      gTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATcg                                                                                                                   <  2:552450/151‑1 (MQ=255)

                        ccGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATcgcg                                                                                                                 >  2:678924/1‑151 (MQ=255)

                          ggTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGAt                                                                                                               >  2:432979/1‑151 (MQ=255)

                           gTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGAtt                                                                                                              >  2:491358/1‑151 (MQ=255)

                             ttATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTa                                                                                                             <  1:1170820/150‑1 (MQ=255)

                              tATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTaa                                                                                                            <  1:84459/150‑1 (MQ=255)

                                 ggTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAg                                                                                                        <  1:703508/151‑1 (MQ=255)

                                    ttttCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACg                                                                                                     >  2:757839/1‑151 (MQ=255)

                                      ttCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGa                                                                                                    >  1:655934/1‑150 (MQ=255)

                                      ttCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGa                                                                                                    <  2:753951/150‑1 (MQ=255)

                                        cACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGaaa                                                                                                  <  2:626630/150‑1 (MQ=255)

                                          cTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACa                                                                                                <  1:121850/150‑1 (MQ=255)

                                             tttCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACagag                                                                                             <  1:811875/150‑1 (MQ=255)

                                             tttCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACagag                                                                                             <  2:747503/150‑1 (MQ=255)

                                              ttCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGAAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACag                                                                                               <  1:1069928/147‑1 (MQ=255)

                                                  cAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAatat                                                                                       <  1:955501/151‑1 (MQ=255)

                                                   aaaaGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATAtt                                                                                      <  2:304515/151‑1 (MQ=255)

                                                   aaaaGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATAtt                                                                                      >  1:181678/1‑151 (MQ=255)

                                                    aaaGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTc                                                                                     >  2:1015470/1‑151 (MQ=255)

                                                     aaGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCg                                                                                    <  1:1097794/151‑1 (MQ=255)

                                                      aGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGc                                                                                   <  2:39159/151‑1 (MQ=255)

                                                      aGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGc                                                                                   >  2:1079926/1‑151 (MQ=255)

                                                         gcACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCAt                                                                                <  2:167259/151‑1 (MQ=255)

                                                          caccacGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATc                                                                               <  1:923033/151‑1 (MQ=255)

                                                           accacGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATcg                                                                              <  1:180535/151‑1 (MQ=255)

                                                                gCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGt                                                                          >  2:756702/1‑150 (MQ=255)

                                                                gCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTc                                                                         <  1:782812/151‑1 (MQ=255)

                                                                gCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTc                                                                         >  1:660751/1‑151 (MQ=255)

                                                                 ctctTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTc                                                                         >  2:807802/1‑150 (MQ=255)

                                                                    ttAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATcc                                                                     >  2:937356/1‑151 (MQ=255)

                                                                       aGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCcgcg                                                                  >  2:11106/1‑151 (MQ=255)

                                                                         aTTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCgcggc                                                                <  1:486621/151‑1 (MQ=255)

                                                                           ttAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGt                                                              >  1:930642/1‑151 (MQ=255)

                                                                             aGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTa                                                             <  1:1119645/150‑1 (MQ=255)

                                                                             aGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTAt                                                            <  2:1148950/151‑1 (MQ=255)

                                                                                cAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGtt                                                         >  1:1105357/1‑151 (MQ=255)

                                                                                    aGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTtgat                                                     >  2:588212/1‑151 (MQ=255)

                                                                                       tgtgCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGAc                                                  >  1:1005194/1‑151 (MQ=255)

                                                                                         tgCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCt                                                >  2:238662/1‑151 (MQ=255)

                                                                                          gcagcaCATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTg                                               <  1:353003/151‑1 (MQ=255)

                                                                                              cacaTGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCgg                                            >  2:869788/1‑150 (MQ=255)

                                                                                               acaTGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGTCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGAt                                          <  1:165771/151‑1 (MQ=255)

                                                                                                      aaTGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTg                                   >  2:224185/1‑151 (MQ=255)

                                                                                                         gCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATg                                <  2:270025/151‑1 (MQ=255)

                                                                                                            ggACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCt                             >  2:1079550/1‑151 (MQ=255)

                                                                                                                   cGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGctc                      <  1:301518/151‑1 (MQ=255)

                                                                                                                       cccGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCtt                  <  2:222818/151‑1 (MQ=255)

                                                                                                                        ccGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCttt                 >  1:204660/1‑151 (MQ=255)

                                                                                                                        ccGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCttt                 <  2:64878/151‑1 (MQ=255)

                                                                                                                         cGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTg                <  1:860273/151‑1 (MQ=255)

                                                                                                                         cGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTg                <  1:994709/151‑1 (MQ=255)

                                                                                                                          gCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTgc               <  1:534473/151‑1 (MQ=255)

                                                                                                                           cTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTgcc              >  2:607629/1‑151 (MQ=255)

                                                                                                                            tgtgCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTgccg             >  1:885069/1‑151 (MQ=255)

                                                                                                                                     aaTGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTGCCGCCTTTGcc     <  2:181680/150‑1 (MQ=255)

                                                                                                                                      aTGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTGCCGCCTTTGCCGt   >  1:717273/1‑151 (MQ=255)

                                                                                                                                        ggTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTGCCGCCTTTGCCGTa  <  2:278452/150‑1 (MQ=255)

GCAGCGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCGATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTGCCGCCTTTGCCGTA  >  NC_000913/2131671‑2131956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A