Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F50 I2 R1
|
139 |
64.5 |
2139856 |
92.7% |
1983646 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,131,812 |
G→A |
R87C (CGC→TGC) |
wcaC ← |
putative glycosyl transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,131,812 | 0 | G | A | 100.0%
| 236.0
/ NA
| 61 | R87C (CGC→TGC) | wcaC | putative glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/37); total (24/37) |
GGTCGTGCAGCGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCGATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTGCCGCCTTTGCCGTAA > NC_000913/2131665‑2131957
|
ggTCGTGCAGCGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAat < 2:927111/150‑1 (MQ=255)
cGTGCAGCGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAAtata > 2:275007/1‑150 (MQ=255)
cGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCTCTTTTGCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGATGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCTAGTAATGGTGAAATATAACTCAATg < 2:507/151‑1 (MQ=255)
cagaccagaGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAAt < 2:1065975/151‑1 (MQ=255)
agagTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCaa < 2:388541/151‑1 (MQ=255)
cGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATc < 2:473271/151‑1 (MQ=255)
ccGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATcgcg < 1:708913/151‑1 (MQ=255)
ccGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATcgcg < 1:497147/151‑1 (MQ=255)
ggTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGAt > 1:678741/1‑151 (MQ=255)
tATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTaa < 2:954260/150‑1 (MQ=255)
tATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTaa > 2:230937/1‑150 (MQ=255)
ggTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGCTTAAACAg < 2:175317/151‑1 (MQ=255)
ttttCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACg > 2:812255/1‑151 (MQ=255)
tttCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACg < 1:609119/150‑1 (MQ=255)
tttCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACg > 1:483508/1‑150 (MQ=255)
tCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGaa < 1:648908/150‑1 (MQ=255)
cACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAAc > 1:809760/1‑151 (MQ=255)
aCTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAAc > 1:86504/1‑150 (MQ=255)
tttttCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAAc > 2:1038484/1‑148 (MQ=255)
ttCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGc > 2:741376/1‑150 (MQ=255)
gCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAata < 2:907007/151‑1 (MQ=255)
gCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAat > 2:782894/1‑150 (MQ=255)
cAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAatat < 2:515404/151‑1 (MQ=255)
aaaaGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCCCATGAAAATGTAGGACCACCGGACCCGCTGTGCGAGTAATGGTCCAATATACCTCATTGAAACGGCCAATCAGCTCGCGTTTCAACAGACGAAACAGAGCAatata < 2:967323/151‑2 (MQ=255)
aaaaGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATAtt < 1:295350/151‑1 (MQ=255)
aaaaGCGCACCACACTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATAtt > 2:445717/1‑151 (MQ=255)
aaaGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTc > 1:753168/1‑151 (MQ=255)
aaGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCg < 1:604459/151‑1 (MQ=255)
ttAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATcc > 2:242960/1‑151 (MQ=255)
tAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATcgc > 1:289418/1‑142 (MQ=255)
tAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATcgc < 2:289393/142‑1 (MQ=255)
aTTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCgcggc < 2:682029/151‑1 (MQ=255)
aGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTa < 1:945100/150‑1 (MQ=255)
aGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTAt < 1:899626/151‑1 (MQ=255)
gCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATg < 1:510254/151‑1 (MQ=255)
aGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGttt < 1:979930/151‑1 (MQ=255)
gTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTtg > 1:147376/1‑151 (MQ=255)
tAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTtg > 1:179232/1‑150 (MQ=255)
gCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTtgatg < 1:1016570/151‑1 (MQ=255)
gCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTtgatg < 2:73093/151‑1 (MQ=255)
gcagcaCATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTg < 2:685437/151‑1 (MQ=255)
gcaCATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCgg > 1:793930/1‑151 (MQ=255)
acaTGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGAt < 1:472237/151‑1 (MQ=255)
aTGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGa < 2:483748/151‑1 (MQ=255)
gCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGAt < 2:878049/150‑1 (MQ=255)
gCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATg < 2:160656/151‑1 (MQ=255)
cAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATgg > 1:84218/1‑151 (MQ=255)
gACCACCGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTg < 2:842084/151‑1 (MQ=255)
accaccGGACCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGa < 2:104762/151‑1 (MQ=255)
aCCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGctctct < 2:975133/151‑1 (MQ=255)
aCCCGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGctctct < 2:705648/151‑1 (MQ=255)
ccGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCttt < 2:764119/151‑1 (MQ=255)
ccGCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCttt > 1:661536/1‑151 (MQ=255)
gCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTgc > 1:539598/1‑151 (MQ=255)
gCTGTGCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTgc > 1:456769/1‑151 (MQ=255)
tgtgCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTgccg > 1:831420/1‑151 (MQ=255)
tgtgCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTgccg > 2:408424/1‑151 (MQ=255)
gtgCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACACTCTCTTTgccg < 2:583127/150‑1 (MQ=255)
gCGAGTAATGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTgccgcca < 2:549193/151‑2 (MQ=255)
tGGTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTGCCGCCTTTGCCGt > 2:597760/1‑150 (MQ=255)
ggTGCAATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTGCCGCCTTTGCCGTaa < 2:200727/151‑1 (MQ=255)
|
GGTCGTGCAGCGTCCAGACCAGAGTGACGTCCGGTTTATGGTTTTTCACTTTTTCGCAAAAGCGCACCACGCTCTTAAGATTTAGCCAGTAGCTGTGCAGCACATGAAAATGCAGGACCACCGGACCCGCTGTGCGAGTAATGGTGCGATATAACTCATTGAAATTGCCAAACAGATCGCGATTAAACAGACGAAACAGAGCAATATTCGCCATCGCGGTCATCCGCGGCGTATGTTTGATGACCTGCGGATAGTTCTGATGGCTGACGCTCTCTTTGCCGCCTTTGCCGTAA > NC_000913/2131665‑2131957
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
