Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I1 R1 141 76.7 2402765 98.4% 2364320 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,341,415 T→C T919A (ACG→GCG)  yfaL ← adhesin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,341,4150TC100.0% 285.3 / NA 74T919A (ACG→GCG) yfaLadhesin
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/43);  total (31/43)

CCGCCCGCAGGTTATTAAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGTTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCTGCGAAATCAACCACTTT  >  NC_000913/2341268‑2341562
                                                                                                                                                   |                                                                                                                                                   
ccgcccgcAGGTTATTAAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTAc                                                                                                                                                  >  1:437740/1‑151 (MQ=255)
  gcccgcAGGTTATTAAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTAct                                                                                                                                                 <  2:148663/150‑1 (MQ=255)
   cccgcAGGTTATTAAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTActtc                                                                                                                                               >  2:470593/1‑151 (MQ=255)
   cccgcAGGTTATTAAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTActtc                                                                                                                                               <  1:465404/151‑1 (MQ=255)
    ccgcAGGTTATTAAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTActtct                                                                                                                                              >  2:627264/1‑151 (MQ=255)
            tattaAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCg                                                                                                                                      >  2:994361/1‑151 (MQ=255)
             attaAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCg                                                                                                                                      <  1:391317/150‑1 (MQ=255)
             attaAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGc                                                                                                                                     <  2:421274/151‑1 (MQ=255)
                aaGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTGCTTGCGATc                                                                                                                                       <  1:1131795/146‑1 (MQ=255)
                 aGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGc                                                                                                                                     >  1:275589/1‑147 (MQ=255)
                 aGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGAGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGc                                                                                                                                     >  1:625155/1‑147 (MQ=255)
                   aTAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATAc                                                                                                                               >  2:389757/1‑151 (MQ=255)
                    tAACCGCCAACTTTGGCATTCAACGCCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCTGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATAc                                                                                                                               <  2:272767/150‑1 (MQ=255)
                     aaCCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGGTCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATAcc                                                                                                                              >  2:264046/1‑150 (MQ=255)
                     aaCCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATAcc                                                                                                                              >  1:850812/1‑150 (MQ=255)
                     aaCCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCa                                                                                                                             <  2:238205/151‑1 (MQ=255)
                             aCTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCgttgt                                                                                                                     >  2:617363/1‑151 (MQ=255)
                                ttGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCgttgtt                                                                                                                    <  1:176714/149‑1 (MQ=255)
                                  ggCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCt                                                                                                                <  1:221847/151‑1 (MQ=255)
                                     aTTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTcc                                                                                                             <  2:241713/151‑1 (MQ=255)
                                       tCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTccac                                                                                                           >  1:568812/1‑151 (MQ=255)
                                         aaCACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTccacc                                                                                                          >  1:55512/1‑150 (MQ=255)
                                         aaCACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGCCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTccacc                                                                                                          >  2:924271/1‑150 (MQ=255)
                                            acCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCg                                                                                                      >  1:322996/1‑151 (MQ=255)
                                               ggCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCgtgt                                                                                                   >  2:889260/1‑151 (MQ=255)
                                                    gTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCa                                                                                              <  2:895835/151‑1 (MQ=255)
                                                       aGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATAc                                                                                           <  2:98038/151‑1 (MQ=255)
                                                        gCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACg                                                                                          >  1:478835/1‑151 (MQ=255)
                                                         cAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGc                                                                                         >  1:915445/1‑151 (MQ=255)
                                                              gTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCa                                                                                    <  1:662966/151‑1 (MQ=255)
                                                                 ggTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCatat                                                                                 >  1:896124/1‑151 (MQ=255)
                                                                    tCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGACGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTg                                                                               >  1:604829/1‑150 (MQ=255)
                                                                     ccGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGAc                                                                             <  2:1176336/151‑1 (MQ=255)
                                                                           cgggtGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGcc                                                                       <  1:150691/151‑1 (MQ=255)
                                                                             ggtGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGc                                                                     >  1:1183033/1‑151 (MQ=255)
                                                                                  tGGATCAGGCTGCGGCGGGGGATAAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGTGGCGCTACTTCTTGCGATCGAAGATACCAGTCGATGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGctgcct                                                                >  1:574624/1‑151 (MQ=255)
                                                                                  tGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGctgcct                                                                >  2:811936/1‑151 (MQ=255)
                                                                                   ggATCAGGATCCGGCGTGGGATCAGGGTCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGctgcct                                                                >  1:270497/1‑150 (MQ=255)
                                                                                           aTCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTg                                                       <  2:538981/151‑1 (MQ=255)
                                                                                             ccGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGa                                                      <  2:275592/150‑1 (MQ=255)
                                                                                               ggCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACt                                                   >  2:109496/1‑151 (MQ=255)
                                                                                                gCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTg                                                  <  2:293667/151‑1 (MQ=255)
                                                                                                 cGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTgc                                                 >  1:1012599/1‑151 (MQ=255)
                                                                                                    gggATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTgcgc                                               <  1:225101/150‑1 (MQ=255)
                                                                                                    gggATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCa                                              <  1:493978/151‑1 (MQ=255)
                                                                                                      gATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCAtt                                            <  2:746371/151‑1 (MQ=255)
                                                                                                         cAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGtt                                         <  1:617354/151‑1 (MQ=255)
                                                                                                            gATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTg                                      >  2:504034/1‑151 (MQ=255)
                                                                                                            gATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTg                                      <  1:1038085/151‑1 (MQ=255)
                                                                                                             aTCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGa                                     <  2:603280/151‑1 (MQ=255)
                                                                                                               cGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGaaa                                   <  1:86973/151‑1 (MQ=255)
                                                                                                               cGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGaaa                                   <  2:582413/151‑1 (MQ=255)
                                                                                                               cGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGaa                                    <  1:791097/150‑1 (MQ=255)
                                                                                                                gggAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAAc                                  <  2:639664/151‑1 (MQ=255)
                                                                                                                 ggAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACt                                 <  2:1183063/151‑1 (MQ=255)
                                                                                                                 ggAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACt                                 <  2:1092834/151‑1 (MQ=255)
                                                                                                                  gAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTg                                <  2:288232/151‑1 (MQ=255)
                                                                                                                  gAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTg                                <  1:1079258/151‑1 (MQ=255)
                                                                                                                      cGGGTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTg                            >  1:1051120/1‑151 (MQ=255)
                                                                                                                       gggTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTgg                           <  2:322999/151‑1 (MQ=255)
                                                                                                                         gTCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGa                         <  2:858949/151‑1 (MQ=255)
                                                                                                                          tCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGctgcc                                                                 <  1:622467/110‑1 (MQ=255)
                                                                                                                          tCTGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGctgcc                                                                 >  2:622476/1‑110 (MQ=255)
                                                                                                                            tGGATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATc                       >  1:660472/1‑150 (MQ=255)
                                                                                                                             ggATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCa                      <  2:1193998/150‑1 (MQ=255)
                                                                                                                             ggATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCa                      <  2:42810/150‑1 (MQ=255)
                                                                                                                             ggATCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAg                     <  2:604838/151‑1 (MQ=255)
                                                                                                                               aTCAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCt                   <  1:80709/151‑1 (MQ=255)
                                                                                                                                 cAGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCTg                  <  2:509279/150‑1 (MQ=255)
                                                                                                                                  aGGTGGCGATGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTCGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCTGCg                <  1:489830/151‑1 (MQ=255)
                                                                                                                                          aTGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCTGCGAAATCAAc        <  2:868191/151‑1 (MQ=255)
                                                                                                                                           tGGCGGCGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCTGCGAAATCAAcc       >  1:1077505/1‑151 (MQ=255)
                                                                                                                                            ggcggcGCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCTGCGAAATCAAcc       >  1:368540/1‑150 (MQ=255)
                                                                                                                                               ggcgCTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCTGCGAAATCAACCACtt   <  1:965646/151‑1 (MQ=255)
                                                                                                                                                gcgcTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCTGCGAAATCAACCACttt  >  1:91294/1‑151 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CCGCCCGCAGGTTATTAAGATAACCGCCAACTTTGGCATTCAACACCGGCTGGTAAGCAGGCGTAGGTTCCGGGTCGGGTGTTGGATCAGGATCCGGCGTGGGATCAGGATCGGGAGTCGGGTCTGGATCAGGTGGCGATGGCGGCGTTACTTCTTGCGATCGCAGATACCAGTCGTTGTTATCTTCCACCAGCGTGTAGTCATACGCTCCCATATTGACGTAGCCGCTGCCTGCCAGACTGAACTGCGCATTGTTTTGAAACTGCGTGGGATCAGCTGCGAAATCAACCACTTT  >  NC_000913/2341268‑2341562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A