Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I2 R1 121 82.0 2593086 97.7% 2533445 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 621,409 A→G F261L (TTT→CTT)  fepD ← ferrienterobactin ABC transporter permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913621,4090AG100.0% 256.1 / NA 68F261L (TTT→CTT) fepDferrienterobactin ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (43/25);  total (43/25)

ACGCGCAGTTCGCCGGGCACAATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAAGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGTTCAGCGCGCGACT  >  NC_000913/621261‑621550
                                                                                                                                                    |                                                                                                                                             
aCGCGCAGTTCGCCGGGCACAATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAggg                                                                                                                                             >  1:81792/1‑151 (MQ=255)
  gcgcAGTTCGCCGGGCACAATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAggg                                                                                                                                             >  1:158810/1‑149 (MQ=255)
   cgcAGTTCGCCGGGCACAATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCa                                                                                                                                           >  2:1162891/1‑150 (MQ=255)
    gcAGTTCGCCGGGCACAATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAAt                                                                                                                                         >  2:748516/1‑151 (MQ=255)
      aGTTCGCCGGGCACAATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCg                                                                                                                                       >  1:1098787/1‑151 (MQ=255)
             cGGGCACAATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAAc                                                                                                                                >  2:1125221/1‑151 (MQ=255)
              gggCACAATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACt                                                                                                                               <  2:220102/151‑1 (MQ=255)
                 cacaATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTAtt                                                                                                                            <  1:435287/151‑1 (MQ=255)
                        aCCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCg                                                                                                                     >  2:1249533/1‑151 (MQ=255)
                           cgcccgATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCAc                                                                                                                  >  2:414631/1‑151 (MQ=255)
                              ccgATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTAc                                                                                                               >  1:414125/1‑151 (MQ=255)
                               cgATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTAcc                                                                                                              >  1:241371/1‑151 (MQ=255)
                                gatgacATCGGCAAACAGCACCAGGGCAGGGGTAGCAAGTAGCGTGACGGGAAGCGACCACCGAAGATCCGCACCCACCACCCAACCCGCCATATGCGGCATCATCAGGCCCATACGGGCAATCGGGCCAACAATTGCTGTCGCACTAcc                                                                                                              >  1:707964/1‑150 (MQ=255)
                                   gatATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACcaca                                                                                                           >  2:237899/1‑150 (MQ=255)
                                     tatCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACaa                                                                                                          >  1:502851/1‑149 (MQ=255)
                                      atCGGCCAACAGCAGCGGGGCAGGGGTAGCAAGTAGCGTGACGGGCATCGACCAGCGATGATCGGCACCTGCCAGCTTACGCGCCATATGCGGCACCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGTCGTCGCTCTACCACaaa                                                                                                         <  1:1254547/149‑1 (MQ=255)
                                      atCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAg                                                                                                        <  1:701426/150‑1 (MQ=255)
                                      atCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGc                                                                                                       <  1:455266/151‑1 (MQ=255)
                                       tCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGc                                                                                                       >  2:206247/1‑150 (MQ=255)
                                       tCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGc                                                                                                       >  2:1107001/1‑150 (MQ=255)
                                        cGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCAc                                                                                                     >  1:729582/1‑151 (MQ=255)
                                           cAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCATgg                                                                                                   >  2:252642/1‑150 (MQ=255)
                                           cAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACgg                                                                                                   >  1:288497/1‑150 (MQ=255)
                                           cAAACAGCAGCAGGGCAGCGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGt                                                                                                  >  1:980381/1‑151 (MQ=255)
                                            aaaCAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGt                                                                                                  >  2:628129/1‑150 (MQ=255)
                                            aaaCAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTa                                                                                                 <  2:87909/151‑1 (MQ=255)
                                             aaCAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTa                                                                                                 >  2:885903/1‑150 (MQ=255)
                                             aaCAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTa                                                                                                 >  2:596509/1‑150 (MQ=255)
                                               cagcagcagGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAAt                                                                                               >  2:641049/1‑150 (MQ=255)
                                                agcagcagGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCg                                                                                             >  1:1217047/1‑151 (MQ=255)
                                                          cagggGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGAcc                                                                                   >  2:1163435/1‑151 (MQ=255)
                                                                 aGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAAc                                                                            >  2:1078982/1‑151 (MQ=255)
                                                                   cAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACtg                                                                          >  1:179394/1‑151 (MQ=255)
                                                                        aGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTgc                                                                     >  2:325527/1‑151 (MQ=255)
                                                                        aGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTgc                                                                     <  1:400917/151‑1 (MQ=255)
                                                                          cGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTgcgc                                                                   <  1:242697/151‑1 (MQ=255)
                                                                          cGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTgcgc                                                                   <  1:99678/151‑1 (MQ=255)
                                                                           gTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTgcgcg                                                                  <  1:572141/151‑1 (MQ=255)
                                                                               cGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCAc                                                              >  2:786833/1‑151 (MQ=255)
                                                                                   cAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCAcgcg                                                           >  2:909122/1‑150 (MQ=255)
                                                                                    aGCGACCAGCGATGATCGGCACCCAACAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGTCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGATAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGa                                                          >  1:1250743/1‑150 (MQ=255)
                                                                                      cGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTg                                                       >  2:1217900/1‑151 (MQ=255)
                                                                                        aCCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGcc                                                     >  2:1139205/1‑151 (MQ=255)
                                                                                         ccAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGccc                                                    >  1:330207/1‑151 (MQ=255)
                                                                                           aGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGccc                                                    >  2:254546/1‑149 (MQ=255)
                                                                                           aGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGccc                                                    >  2:705176/1‑149 (MQ=255)
                                                                                             cGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGATAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAgcg                                                <  2:137424/151‑1 (MQ=255)
                                                                                              gatgatCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAgcgc                                               <  1:139738/151‑1 (MQ=255)
                                                                                                  atCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTc                                           >  2:920662/1‑151 (MQ=255)
                                                                                                  atCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTc                                           >  1:208513/1‑151 (MQ=255)
                                                                                                  atCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTc                                           <  1:414601/151‑1 (MQ=255)
                                                                                                       cacccaccAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCgg                                       >  1:1143712/1‑150 (MQ=255)
                                                                                                             ccaGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGc                                 >  2:1207313/1‑150 (MQ=255)
                                                                                                             ccaGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCt                                <  1:1225227/151‑1 (MQ=255)
                                                                                                              caGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTg                               <  2:502879/151‑1 (MQ=255)
                                                                                                              caGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCACCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTg                               >  1:1148098/1‑151 (MQ=255)
                                                                                                               aGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGc                              >  1:351705/1‑151 (MQ=255)
                                                                                                                   aaCGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAg                          <  1:1249495/151‑1 (MQ=255)
                                                                                                                    aCGCGCCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAgg                         <  2:4842/151‑1 (MQ=255)
                                                                                                                      gcgcCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCt                       <  2:1098827/151‑1 (MQ=255)
                                                                                                                       cgcCATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTc                      <  1:131539/151‑1 (MQ=255)
                                                                                                                          cATATGCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCaaa                   <  1:895182/151‑1 (MQ=255)
                                                                                                                               gCGGCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGt               <  1:860267/150‑1 (MQ=255)
                                                                                                                                 tgCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGTTc             >  1:714190/2‑150 (MQ=255)
                                                                                                                                 ggCATCATCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGTTCa            <  2:651860/151‑1 (MQ=255)
                                                                                                                                   catcatCAGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGTTCAgc          <  1:350684/151‑1 (MQ=255)
                                                                                                                                      catcaGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGTTCAgcgcg       >  1:450440/1‑151 (MQ=255)
                                                                                                                                       atcaGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGTTCAgcgcgc      >  2:354238/1‑151 (MQ=255)
                                                                                                                                       atcaGGCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGTTCAgcgcgc      <  2:891686/151‑1 (MQ=255)
                                                                                                                                           ggCCAATAAGGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGTTCAGCGCGCGACt  <  1:1268377/151‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                             
ACGCGCAGTTCGCCGGGCACAATCACCCGCCCGATGATATCGGCAAACAGCAGCAGGGCAGGGGTAGCAAGTAGCGTGACGGGCAGCGACCAGCGATGATCGGCACCCACCAGCCAACGCGCCATATGCGGCATCATCAGGCCAATAAAGGCAATCGGGCCAACTATTGCCGTCGCACTACCACAAAGCACGGTAATCGCCAGCAGACCAATCAACTGTGTGCGCGCCACGCGACTGCCCAGCGCCGTCGCGGTGTCGCTGCCGAGGCTCAAACTGTTCAGCGCGCGACT  >  NC_000913/621261‑621550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A