Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I2 R1 121 82.0 2593086 97.7% 2533445 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,088,009 C→T A84T (GCG→ACG)  yeeY ← LysR family putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,088,0090CT98.9% 338.1 / ‑4.3 87A84T (GCG→ACG) yeeYLysR family putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (47/39);  total (48/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01

CACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGCCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGAACGGTGTAAC  >  NC_000913/2087862‑2088155
                                                                                                                                                   |                                                                                                                                                  
caccGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTg                                                                                                                                                 >  1:898688/1‑151 (MQ=255)
   cGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCtt                                                                                                                                              >  1:1111034/1‑151 (MQ=255)
    gAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCttt                                                                                                                                             <  1:1042035/151‑1 (MQ=255)
    gAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCttt                                                                                                                                             <  1:875990/151‑1 (MQ=255)
        aCGCCATTGATAAACTTCAGGCGCGCCCCGATATGATGTTGATAAAAAGCTTCAATAAGTGGAGCAAGCAGAGAAAAAGGAAACGTGACGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTcc                                                                                                                                          <  1:478073/150‑1 (MQ=255)
          gCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGt                                                                                                                                       >  1:145113/1‑151 (MQ=255)
           ccATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGtt                                                                                                                                      >  1:851799/1‑151 (MQ=255)
             aTTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTcc                                                                                                                                    >  1:974271/1‑151 (MQ=255)
              ttGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTccc                                                                                                                                   >  2:171152/1‑151 (MQ=255)
              ttGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTcc                                                                                                                                    >  1:877665/1‑150 (MQ=255)
                gATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGc                                                                                                                                 <  2:279434/151‑1 (MQ=255)
                     aCTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGt                                                                                                                            <  2:636237/151‑1 (MQ=255)
                        tCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATg                                                                                                                         >  2:82679/1‑151 (MQ=255)
                         cAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATg                                                                                                                         <  1:604070/150‑1 (MQ=255)
                            gcgcGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGc                                                                                                                        >  2:316021/1‑148 (MQ=255)
                             cgcgTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGaa                                                                                                                    <  2:353506/151‑1 (MQ=255)
                                gTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACtt                                                                                                                 <  2:336333/151‑1 (MQ=255)
                                 tcccGCTATGATGTTGATAAAAAGCGTCAATGAGTGGCGCAAGTAGAGAAAAAGGAAAGGTGTCGTCCACGCCAATCACCGGCTCGTTTGCCCAGCCTTCATGCAGTTTGATCGTCTGATTTTCCAGTTCCCGCACGGTATGCAGAACt                                                                                                                  <  1:1121201/146‑1 (MQ=255)
                                    cGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGGGTCGTCCACGCCAATCACCAACTCGGTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACAGTATGCAGAACTTcc                                                                                                               >  2:353525/1‑149 (MQ=255)
                                     gCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGc                                                                                                            <  2:465968/151‑1 (MQ=255)
                                        atgatgTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGcc                                                                                                           <  2:592341/149‑1 (MQ=255)
                                          gatgTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCttt                                                                                                       <  1:705590/151‑1 (MQ=255)
                                          gatgTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCtt                                                                                                        <  2:172998/150‑1 (MQ=255)
                                               tGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTctct                                                                                                   >  2:434041/1‑150 (MQ=255)
                                               tGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTctct                                                                                                   <  2:1019413/150‑1 (MQ=255)
                                               tGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTctct                                                                                                   <  2:354053/150‑1 (MQ=255)
                                                gATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTctct                                                                                                   <  2:161324/149‑1 (MQ=255)
                                                    aaaaGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAAc                                                                                             >  1:1162674/1‑151 (MQ=255)
                                                     aaaGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACa                                                                                            <  2:1084533/151‑1 (MQ=255)
                                                      aaGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACAt                                                                                           <  2:915200/151‑1 (MQ=255)
                                                       aGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACAtt                                                                                          >  2:1187286/1‑151 (MQ=255)
                                                             aaTGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCg                                                                                    >  1:1157498/1‑151 (MQ=255)
                                                             aaTGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCg                                                                                    >  2:742884/1‑151 (MQ=255)
                                                               tGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCCCCCTTTCTCTAATAACATTTTTCCgg                                                                                   >  1:392317/1‑150 (MQ=255)
                                                                   tGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCgg                                                                              >  1:484077/1‑151 (MQ=255)
                                                                     gcgcAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGt                                                                            >  2:370313/1‑151 (MQ=255)
                                                                       gcAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTg                                                                           >  1:452051/1‑150 (MQ=255)
                                                                        cAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGa                                                                          >  2:571199/1‑150 (MQ=255)
                                                                            cAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCC‑CCCTTTCTCTAATAACATTTTTCCGGTGCg                                                                               <  1:846441/140‑1 (MQ=255)
                                                                            cAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCC‑CCCTTTCTCTAATAACATTTTTCCGGTGCg                                                                               >  2:846479/1‑140 (MQ=255)
                                                                             agagAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAAttt                                                                      >  1:577195/1‑149 (MQ=255)
                                                                             agagAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAAttt                                                                      >  2:950382/1‑149 (MQ=255)
                                                                              gcgaAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTTCGGTGCGGGCGAATTTa                                                                     >  1:720086/3‑149 (MQ=255)
                                                                              gagaAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAgc                                                                   <  2:697319/151‑1 (MQ=255)
                                                                                gaAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAgcgc                                                                 >  2:1081977/1‑151 (MQ=255)
                                                                                 aaaaaGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGcgcg                                                                <  2:252094/151‑1 (MQ=255)
                                                                                  aaaaGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCgg                                                               <  1:65880/151‑1 (MQ=255)
                                                                                   aaaGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGgt                                                              <  2:488448/151‑1 (MQ=255)
                                                                                        aaaCGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCg                                                         >  2:22871/1‑151 (MQ=255)
                                                                                         aaCGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGc                                                        <  2:969280/151‑1 (MQ=255)
                                                                                          aCGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCt                                                       <  2:908733/151‑1 (MQ=255)
                                                                                           cGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTa                                                      <  2:712695/151‑1 (MQ=255)
                                                                                           cGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTa                                                      <  2:997083/151‑1 (MQ=255)
                                                                                           cGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTa                                                      <  1:149748/151‑1 (MQ=255)
                                                                                            gtgtCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTAc                                                     <  2:300214/151‑1 (MQ=255)
                                                                                            gtgtCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTAc                                                     <  1:917875/151‑1 (MQ=255)
                                                                                             tgtCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACg                                                    >  1:283978/1‑151 (MQ=255)
                                                                                              gtcgtcCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACg                                                    >  2:1120638/1‑150 (MQ=255)
                                                                                              gtcgtcCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGa                                                   <  1:892810/151‑1 (MQ=255)
                                                                                                cgtcCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGAt                                                  <  2:524399/150‑1 (MQ=255)
                                                                                                  tcCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGCACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCa                                                >  1:183204/1‑150 (MQ=255)
                                                                                                   ccACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCa                                                >  2:734098/1‑149 (MQ=255)
                                                                                                   ccACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAg                                              <  2:196219/151‑1 (MQ=255)
                                                                                                     aCGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGc                                             >  2:711107/1‑150 (MQ=255)
                                                                                                      cGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGCCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCa                                            >  1:416086/1‑150 (MQ=255)
                                                                                                             cACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAata                                    <  1:1081936/151‑1 (MQ=255)
                                                                                                             cACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAata                                    <  1:892581/151‑1 (MQ=255)
                                                                                                                cAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATAtt                                  >  1:744576/1‑150 (MQ=255)
                                                                                                                 aGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATAtt                                  >  1:1018382/1‑149 (MQ=255)
                                                                                                                   cTCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTACAGTTCCCGCACGGTATGCAGAACTTCACGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAgg                              >  1:592615/1‑151 (MQ=255)
                                                                                                                    tCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGt                             >  1:336166/1‑151 (MQ=255)
                                                                                                                    tCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGt                             >  2:786770/1‑151 (MQ=255)
                                                                                                                    tCGTTTTCCCAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGt                             >  2:923562/1‑151 (MQ=255)
                                                                                                                           cccAGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTc                      >  1:342735/1‑151 (MQ=255)
                                                                                                                           cccAGCCTTCATGCAGCTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCttt                       >  1:1146641/1‑150 (MQ=255)
                                                                                                                              aGCCTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTcc                     >  1:1151745/1‑149 (MQ=255)
                                                                                                                                ccTTCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCt                 >  2:443148/1‑151 (MQ=255)
                                                                                                                                  ttCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTtg               >  2:66271/1‑151 (MQ=255)
                                                                                                                                   tCATGCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCtt                <  1:979286/149‑1 (MQ=255)
                                                                                                                                       gCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGaa           <  2:877705/150‑1 (MQ=255)
                                                                                                                                       gCAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGAAc          <  2:29839/151‑1 (MQ=255)
                                                                                                                                        cAGTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGAACg         >  2:827369/1‑151 (MQ=255)
                                                                                                                                          gTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGAACgg        >  1:287695/1‑150 (MQ=255)
                                                                                                                                          gTTTGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGAACGgt       <  2:836039/151‑1 (MQ=255)
                                                                                                                                           tttGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGAACGgtg      >  1:787542/1‑151 (MQ=255)
                                                                                                                                           tttGATCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGAACGgtg      >  2:151105/1‑151 (MQ=255)
                                                                                                                                               aTCGTCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGAACGGTGTAAc  >  1:14387/1‑151 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CACCGAGTACGCCATTGATAAACTTCAGGCGCGTCACGCTATGATGTTGATAAAAAGCTTCAATGAGTGGCGCAAGCAGAGAAAAAGGAAACGTGTCGTCCACGCCAATCACCAGCTCGTTTTCCCAGCCTTCATGCAGTTTGATCGCCTGCTTTTCCAGTTCCCGCACGGTATGCAGAACTTCCCGCCCTTTCTCTAATAACATTTTTCCGGTGCGGGTGAATTTAGCGCGGTGTCCGCTACGATCAAGCAATTGAATATTAAGGTCGCTTTCCAGCTTGTGAACGGTGTAAC  >  NC_000913/2087862‑2088155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A