Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F50 I2 R1	209	44.2	1360995	98.7%	1343302	150.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,088,373	G→A	G252G (GGC→GGT)	yeeZ ←	putative epimerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,088,373	0	G	A	100.0%	180.1 / NA	47	G252G (GGC→GGT)	yeeZ	putative epimerase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (20/27); total (20/27)

GGATCATCAACACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTGCCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACATATATTATAGATGTGTCCGCCTTTAG  >  NC_000913/2088228‑2088518

ggATCATCAACACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATc                                                                                                                                              <  1:325360/151‑1 (MQ=255)

   tcatcaACACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCaat                                                                                                                                           >  2:664371/1‑151 (MQ=255)

    catcaACACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCaata                                                                                                                                          <  1:589906/151‑1 (MQ=255)

    catcaACACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCaat                                                                                                                                           >  2:627218/1‑150 (MQ=255)

      tcaACACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCaataat                                                                                                                                        >  2:572678/1‑151 (MQ=255)

        aaCACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCaata                                                                                                                                          <  1:394021/147‑1 (MQ=255)

        aaCACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCt                                                                                                                                      >  2:175883/1‑151 (MQ=255)

        aaCACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCt                                                                                                                                      <  1:268874/151‑1 (MQ=255)

          cacaTCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTa                                                                                                                                    <  1:214060/151‑1 (MQ=255)

             aTCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCt                                                                                                                                 <  1:670742/151‑1 (MQ=255)

                cagcagTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTg                                                                                                                              <  1:673739/151‑1 (MQ=255)

                          ttCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTcc                                                                                                                     >  2:222480/1‑150 (MQ=255)

                           tCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTcc                                                                                                                     >  2:344624/1‑149 (MQ=255)

                             aTACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGAc                                                                                                                 >  1:478028/1‑151 (MQ=255)

                                cacGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTAt                                                                                                              <  2:66282/151‑1 (MQ=255)

                                  cGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTAttt                                                                                                            <  1:238699/151‑1 (MQ=255)

                                   gCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTc                                                                                                           >  1:175241/1‑151 (MQ=255)

                                      cccTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACGAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTCCCTTTGCCGCTGTCCAGACTATTTCt                                                                                                          <  1:93267/149‑1 (MQ=255)

                                                gCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAgg                                                                                              <  1:674743/151‑1 (MQ=255)

                                                            ctgctgGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGcccc                                                                                    >  1:58416/1‑149 (MQ=255)

                                                              gctgGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTa                                                                                <  2:468880/151‑1 (MQ=255)

                                                                 ggCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTaaa                                                                              <  1:102240/150‑1 (MQ=255)

                                                                  gCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACg                                                                            <  1:499546/151‑1 (MQ=255)

                                                                   cGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACgg                                                                           >  1:560295/1‑151 (MQ=255)

                                                                                  cAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAg                                                            <  1:608146/151‑1 (MQ=255)

                                                                                    gCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGaa                                                          <  1:451422/151‑1 (MQ=255)

                                                                                             ccAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTAcg                                                 >  2:168031/1‑151 (MQ=255)

                                                                                             ccAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTAcg                                                 <  2:560278/151‑1 (MQ=255)

                                                                                              cAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTAcgc                                                >  2:271553/1‑151 (MQ=255)

                                                                                               aGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTAcgcg                                               <  1:430832/151‑1 (MQ=255)

                                                                                                 cGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACgcgc                                              >  1:383415/1‑150 (MQ=255)

                                                                                                  ggATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACgcgc                                              >  1:641557/1‑149 (MQ=255)

                                                                                                  ggATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAg                                            <  2:391339/151‑1 (MQ=255)

                                                                                                            aCTGGTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACTCGCAGGGTGAGCt                                    <  1:280893/149‑1 (MQ=255)

                                                                                                               ggTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGgcg                                <  1:269070/150‑1 (MQ=255)

                                                                                                               ggTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGgc                                 <  2:184294/149‑1 (MQ=255)

                                                                                                                gTATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGgcgc                               >  1:291551/1‑150 (MQ=255)

                                                                                                                 tATTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAGAACATTACGCGCAGGGTGAGCTGGCGcac                             >  1:193772/1‑151 (MQ=255)

                                                                                                                  aTTCAAATCCCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGcaca                            <  2:143933/151‑1 (MQ=255)

                                                                                                                      aaaTCTCAGTTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTTCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACat                           >  2:461527/1‑148 (MQ=255)

                                                                                                                      aaaTCCCAATTCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACatata                        <  1:79462/151‑1 (MQ=255)

                                                                                                                            cAGTTCATTACAAATCCGACTACCATCAATAAACTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACATATATTATAg                  <  2:448234/151‑1 (MQ=255)

                                                                                                                                tCATTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACATATATTATAGAtg               <  2:532269/150‑1 (MQ=255)

                                                                                                                                  aTTACAAATCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACATATATTATAGATgtgt            >  2:235255/1‑151 (MQ=255)

                                                                                                                                        aaTCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACATATATTATAGATGTGTCCGCCt      >  2:198226/1‑151 (MQ=255)

                                                                                                                                         aTCCGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACATATATTATAGATGTGTCCGCCtt     >  1:112298/1‑151 (MQ=255)

                                                                                                                                            cGACTACCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACATATATTATAGATGTGTCCGCCTTTAg  <  1:549520/151‑1 (MQ=255)

GGATCATCAACACATCCAGCAGTGGTTTCATACACGCCCCCTTGCAGTGCATGCGGCGTCCTGCTGGCGTGATCGTTTACTCCAGCGGCATTACCAGCGGATCGGGATACTGGTATTCAAATCCCAGTTCATTACAAATCCGACTGCCATCAATAATCTTACCTTTGCCGCTGTCCAGACTATTTCTGAACTGCGGAGGTTCCAGCCCCAGTAAACGGGCCATCTGCGGATAGAAAACATTACGCGCAGGGTGAGCTGGCGCACATATATTATAGATGTGTCCGCCTTTAG  >  NC_000913/2088228‑2088518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A