Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I2 R1 121 82.0 2593086 97.7% 2533445 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,331,551 T→C pseudogene (2852/4605 nt) yfaS ← pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,331,5510TC100.0% 284.5 / NA 76pseudogene (2852/4605 nt)yfaSpseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (46/30);  total (46/30)

CCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCTGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCGTTCATCCCACGCGCG  >  NC_000913/2331403‑2331697
                                                                                                                                                    |                                                                                                                                                  
cccATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCccgc                                                                                                                                                  <  1:834712/151‑1 (MQ=255)
   aTTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGctga                                                                                                                                               <  2:668243/151‑1 (MQ=255)
       tgttgCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGctgactg                                                                                                                                            <  2:992975/150‑1 (MQ=255)
       tgttgCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGctgactg                                                                                                                                            <  2:1088218/150‑1 (MQ=255)
         ttgCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGctgactga                                                                                                                                           >  2:738613/1‑149 (MQ=255)
         ttgCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGctgactga                                                                                                                                           >  1:539905/1‑149 (MQ=255)
             aGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATaa                                                                                                                                     <  2:804593/151‑1 (MQ=255)
              gTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATaa                                                                                                                                     >  2:89959/1‑150 (MQ=255)
               ttCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAAc                                                                                                                                   >  1:953508/1‑151 (MQ=255)
                tCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAAc                                                                                                                                   <  2:506722/150‑1 (MQ=255)
                   gCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTc                                                                                                                               >  1:1149090/1‑151 (MQ=255)
                    cACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTcc                                                                                                                              >  1:105186/1‑151 (MQ=255)
                        tAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTgc                                                                                                                           <  2:631467/150‑1 (MQ=255)
                               ccAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGtt                                                                                                                   <  2:880599/151‑1 (MQ=255)
                               ccAGATTGCTGAATATTCCGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGtt                                                                                                                   >  2:1030396/1‑151 (MQ=255)
                                 aGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTg                                                                                                                 >  1:274644/1‑151 (MQ=255)
                                  gATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGt                                                                                                                >  2:373924/1‑151 (MQ=255)
                                  gATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGt                                                                                                                <  2:1204967/151‑1 (MQ=255)
                                  gATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGt                                                                                                                >  1:831793/1‑151 (MQ=255)
                                   aTTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTc                                                                                                               >  1:1197766/1‑151 (MQ=255)
                                     tccTGAATATTCTGCGTCAGCGAAATATAATACGCCCCTGTGTGCAGCGTCGGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGATGATAAACAGTCCTGCCGCCGGTTTg                                                                                                                 <  1:260513/145‑1 (MQ=255)
                                        tGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGccc                                                                                                           >  1:225140/1‑150 (MQ=255)
                                         gAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCAc                                                                                                         >  2:521317/1‑151 (MQ=255)
                                         gAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCAc                                                                                                         <  1:760953/151‑1 (MQ=255)
                                           atatTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCAcgc                                                                                                       >  2:19786/1‑151 (MQ=255)
                                           atatTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCAcgc                                                                                                       >  2:1033028/1‑151 (MQ=255)
                                            tatTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCAcgcg                                                                                                      >  1:1225848/1‑151 (MQ=255)
                                            tatTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCAcgcg                                                                                                      >  1:946578/1‑151 (MQ=255)
                                            tatTCTGCCTCAGCGAAATATAATTCGCCCATTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCCTCGGTTCGTTATCCCGCTGACTGAAGATAATCAGTCCTGCCGCCGGTTTgccccacac                                                                                                         >  1:802532/1‑140 (MQ=255)
                                                   cGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACAcc                                                                                               <  2:113654/151‑1 (MQ=255)
                                                      cAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGtt                                                                                            >  2:430989/1‑151 (MQ=255)
                                                       aGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTg                                                                                           <  1:993017/151‑1 (MQ=255)
                                                         cGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGc                                                                                         >  2:199338/1‑151 (MQ=255)
                                                         cGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGCCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGc                                                                                         >  2:460291/1‑151 (MQ=255)
                                                          gAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGc                                                                                         >  2:31276/1‑150 (MQ=255)
                                                          gAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGc                                                                                         >  2:1209791/1‑150 (MQ=255)
                                                          gAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGc                                                                                         >  2:1149804/1‑150 (MQ=255)
                                                           aaaTATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCAt                                                                                       >  1:427969/1‑151 (MQ=255)
                                                           aaaTATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCAt                                                                                       <  1:1204040/151‑1 (MQ=255)
                                                             atatAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATAc                                                                                     >  2:549011/1‑151 (MQ=255)
                                                                taATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTcc                                                                                  >  1:492227/1‑151 (MQ=255)
                                                                 aaTTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTcc                                                                                  >  2:786961/1‑150 (MQ=255)
                                                                   ttCGCCCCTTTGTGCAGCGTCAGCGTCTGCCGCATCTCAGCGCCTGCCAATTTAGTCACCAGCGCCACCGGCTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACt                                                                               >  1:657465/1‑151 (MQ=255)
                                                                     cGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTc                                                                             >  2:286434/1‑151 (MQ=255)
                                                                      gCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTc                                                                             >  2:264082/1‑150 (MQ=255)
                                                                       ccccTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCCCCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCa                                                                            <  1:16266/150‑1 (MQ=255)
                                                                           tttGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGt                                                                         >  2:1193230/1‑149 (MQ=255)
                                                                            ttGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTag                                                                       >  2:821247/1‑150 (MQ=255)
                                                                            ttGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTag                                                                       <  1:734312/150‑1 (MQ=255)
                                                                            ttGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTag                                                                       <  2:231405/150‑1 (MQ=255)
                                                                            ttGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTag                                                                       <  2:977610/150‑1 (MQ=255)
                                                                             tgtgCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTag                                                                       >  2:139526/1‑149 (MQ=255)
                                                                              gtgCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAgaga                                                                    <  2:946960/151‑1 (MQ=255)
                                                                                 cagcgtcagcgtCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGAttt                                                                 >  1:1214044/1‑151 (MQ=255)
                                                                                 cagcgtcagcgtCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTGCATGTAGAGAttt                                                                 <  2:640998/151‑1 (MQ=255)
                                                                                   gcgtcagcgtcTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGAttttt                                                               <  1:1174273/151‑1 (MQ=255)
                                                                                           gtcTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAAc                                                       >  2:266541/1‑151 (MQ=255)
                                                                                           gtcTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAAc                                                       >  1:354786/1‑151 (MQ=255)
                                                                                              tGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGc                                                     >  2:441529/1‑150 (MQ=255)
                                                                                               ggCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGc                                                     <  2:1159771/149‑1 (MQ=255)
                                                                                               ggCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCa                                                    <  2:185381/150‑1 (MQ=255)
                                                                                                 cgcATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGAt                                                 <  1:199335/151‑1 (MQ=255)
                                                                                                             ccTGCAAATTTAGTCACCACCGCCACCGGTTCGTTACCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCt                                     <  1:1091823/151‑1 (MQ=255)
                                                                                                                    aTTTAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGAc                              <  1:1207004/151‑1 (MQ=255)
                                                                                                                      ttAGTCCCCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGAcc                             <  2:427999/150‑1 (MQ=255)
                                                                                                                       tAGTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGCTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGAcc                             >  1:595468/1‑149 (MQ=255)
                                                                                                                         gTCACCAGCGCCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGcc                         <  2:105181/151‑1 (MQ=255)
                                                                                                                                gcgcCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGcc                  <  2:1148688/151‑1 (MQ=255)
                                                                                                                                 cgcCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCg                 >  1:1148301/1‑151 (MQ=255)
                                                                                                                                 cgcCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCg                 >  1:876701/1‑151 (MQ=255)
                                                                                                                                  gcCACCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCGt                >  1:803994/1‑151 (MQ=255)
                                                                                                                                     aCCGGTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCGTTc              >  2:182522/1‑150 (MQ=255)
                                                                                                                                         gTTCGTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCGTTCATccc         >  1:1172476/1‑151 (MQ=255)
                                                                                                                                             gTTATCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCGTTCATCCCAcgc     <  1:846296/151‑1 (MQ=255)
                                                                                                                                                aTCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCGTTCATCCCAcgcgcg  >  2:1241979/1‑151 (MQ=255)
                                                                                                                                                aTCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCGTTCATCCCAcgcgcg  >  1:613254/1‑151 (MQ=255)
                                                                                                                                                aTCCCGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCGTTCATCCCAcgcgc   <  2:125699/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
CCCATTTTGTTGCAGTTCTGCACTTAACAAGCCAGATTGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCTGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCCCGACCAGCCCGTCGCCGTTCATCCCACGCGCG  >  NC_000913/2331403‑2331697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A