Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F50 I2 R1
|
139 |
64.5 |
2139856 |
92.7% |
1983646 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,259,033 |
A→G |
K81K (AAA→AAG) |
ychH → |
DUF2583 family putative inner membrane protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,259,033 | 0 | A | G | 92.7%
| 166.0
/ ‑4.1
| 55 | K81K (AAA→AAG) | ychH | DUF2583 family putative inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (4/0); new base G (14/37); total (18/37) |
| Fisher's exact test for biased strand distribution p-value = 8.97e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
GTTACCACAGTTTAATATGCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCC > NC_000913/1258886‑1259175
|
gTTACCACAGTTTAATATGCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGt < 2:795714/151‑1 (MQ=255)
tACCACAGTTTAATATGCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGtt < 1:518332/150‑1 (MQ=255)
caGTTTAATATGCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGGCCGTTACTGGGGGGGTCGCCACTATGACAAACGTTgccccc > 2:338739/1‑151 (MQ=255)
caGTTTAATATGCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGGTCGCCACTATGACAAGCGTTgccgcc > 1:245002/1‑151 (MQ=255)
gTTTAATATGCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGt < 2:874628/151‑1 (MQ=255)
atGCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGAt < 1:907787/150‑1 (MQ=255)
gCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAAt < 2:830435/151‑1 (MQ=255)
gCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAAt < 2:286110/151‑1 (MQ=255)
cccAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGGTCGCCACTATGACAAGCGTTGCCGCCGGAGCGATAAt > 1:823397/1‑149 (MQ=255)
cccAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGCGTGCGACCGTTACTGGTGGGTTCGCCACTATTACAAGCGTTTCCGCCGCAGCGGTAATc > 1:576742/1‑150 (MQ=255)
aGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGcca < 2:640076/151‑2 (MQ=255)
aTTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTc < 1:946420/150‑1 (MQ=255)
tCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATa < 2:91173/150‑1 (MQ=255)
cGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAg < 1:1053967/150‑1 (MQ=255)
gCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCt < 1:331826/151‑1 (MQ=255)
aTGGTGCAGCGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACa < 1:328013/151‑1 (MQ=255)
ggTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACaa < 1:223986/150‑1 (MQ=255)
ggTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACaa < 1:148733/150‑1 (MQ=255)
ggTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACaa < 2:930049/150‑1 (MQ=255)
tGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGGTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAaat > 1:220745/1‑150 (MQ=255)
gCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCTTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAaataa < 1:167145/151‑1 (MQ=255)
cAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAaataa < 1:640788/150‑1 (MQ=255)
aGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATg < 2:920412/151‑1 (MQ=255)
aaGTATTTTCGTCGGTGCCATTCTCTTGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCTTTACTGGTGGTTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGtt < 2:596990/150‑1 (MQ=255)
aGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTg < 2:929917/151‑1 (MQ=255)
aTTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTg < 2:544745/151‑1 (MQ=255)
ttttCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGGGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTTCTg > 2:392377/1‑150 (MQ=255)
gCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGGGGGCATGAAAAGGTGTGCGACCGGTACTGGGGGGGTCGCCCCTATGACAAGCGTTGCCGCCGTAGCGATAATCGGCGTCATAGGTAACAAATAATGCAGGTTGCTGAACAGTCAAttt > 2:1055146/1‑151 (MQ=255)
gCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGGGTGCGACCGTTACTTGGGGGGTCGCCACTATGACAAACGTTTCCGCCGTAACGATAATCGCCGTCATAACTAACAAATAATGCAGTTTTCTGAACAGTCAGgtt > 1:1062907/1‑151 (MQ=255)
cATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTg > 1:769574/1‑150 (MQ=255)
aTTCTCTGGCTGGCGGGTGCCCGGGTTGGGGGGCATGAACAGGTGGGCGACCGTTACTGGAGGGGTCGGCACTAAGCCAAACGTTGCCCCCCGCGCGGCAATCCCCGGCCTAACTAACAAATAATTCAGTTTTTTGACcaagcaggtt > 2:885242/1‑140 (MQ=255)
ttCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGGTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTTCTGACCAGTCAGTTTgcgc > 1:753819/1‑151 (MQ=255)
tctcTGGCTGGCGGGGGCCCGGGTTGGCGGGCATTAAAAAGTGTGCGACCGTTTCTGGGGGGTTCGCCACTATTACAAACGGTGCCGCCGTAGCGATAAACGCCGTCATAGCTAACAAAAAAAGCAGTTTGCTGACCAGTCAGTTTgcgc > 2:947915/1‑150 (MQ=255)
ggTGCCCGTGATGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCACCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAAtct > 2:628268/1‑151 (MQ=255)
gCCCGTGTTGGCGGGCATGAACAGGTGTGGGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCg < 2:568543/150‑1 (MQ=255)
cGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACt < 1:1055201/151‑1 (MQ=255)
gtTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTta < 1:517671/150‑1 (MQ=255)
gCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAAt < 2:516990/151‑1 (MQ=255)
cATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGcc < 2:63031/151‑1 (MQ=255)
aTGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCa < 2:97095/151‑1 (MQ=255)
aTGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCa < 2:359232/151‑1 (MQ=255)
aaCAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATcg < 1:1067921/151‑1 (MQ=255)
ggTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATcgccgc < 1:656033/151‑1 (MQ=255)
gtgtGCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCcgcg < 2:758819/151‑1 (MQ=255)
gtgCGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCcgcgc < 2:125076/150‑1 (MQ=255)
cGACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGcgacg < 2:1014535/151‑1 (MQ=255)
gACCGTTACTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGcgacg > 1:873184/1‑150 (MQ=255)
aCTGGTGGGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCggg > 1:14640/1‑150 (MQ=255)
tggtggGTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCCGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATAGCCGCGCGACGATTCGGga > 2:583684/1‑149 (MQ=255)
gggTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAAc < 1:299314/150‑1 (MQ=255)
gggTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACg > 2:374233/1‑151 (MQ=255)
gggTTCGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACg > 2:591126/1‑151 (MQ=255)
cGCCACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAg < 2:996889/150‑1 (MQ=255)
cACTATGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGt < 1:848761/151‑1 (MQ=255)
aTGACAAGCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTccc < 1:513720/150‑1 (MQ=255)
|
GTTACCACAGTTTAATATGCCCCAGTATTTCGCACATGGTGCAGTGCTAAGTATTTTCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCC > NC_000913/1258886‑1259175
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A