Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F50 I2 R1	139	64.5	2139856	92.7%	1983646	149.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,098,022	T→C	T94A (ACG→GCG)	wzzB ←	regulator of length of O‑antigen component of lipopolysaccharide chains

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,098,022	0	T	C	100.0%	238.0 / NA	64	T94A (ACG→GCG)	wzzB	regulator of length of O‑antigen component of lipopolysaccharide chains
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (35/29); total (35/29)

GCAGTTTGCCCAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAAT  >  NC_000913/2097880‑2098166

gCAGTTTGCCCAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTg                                                                                                                                            <  2:440751/149‑1 (MQ=255)

 cAGTTTGCCCAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCa                                                                                                                                          >  1:823302/1‑150 (MQ=255)

   gTTTGCCCAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAAt                                                                                                                                       <  1:321677/151‑1 (MQ=255)

      tGCTCAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATc                                                                                                                                      <  2:646062/149‑1 (MQ=255)

      tGCCCAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATcc                                                                                                                                     <  2:469677/150‑1 (MQ=255)

      tGCCCAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATcc                                                                                                                                     <  2:341662/150‑1 (MQ=255)

       gCCCAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGa                                                                                                                                   <  1:277971/151‑1 (MQ=255)

          cAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATAc                                                                                                                                >  2:198760/1‑151 (MQ=255)

           aaCATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACt                                                                                                                               <  2:1025051/151‑1 (MQ=255)

            aCATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACtt                                                                                                                              >  1:710089/1‑151 (MQ=255)

             cATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACttt                                                                                                                             >  1:299068/1‑151 (MQ=255)

                      cAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGc                                                                                                                    >  1:312838/1‑151 (MQ=255)

                       aGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGcc                                                                                                                   <  1:1060780/151‑1 (MQ=255)

                       aGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGcc                                                                                                                   <  1:554260/151‑1 (MQ=255)

                        gTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCt                                                                                                                  <  2:783235/151‑1 (MQ=255)

                        gTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCt                                                                                                                  >  1:879109/1‑151 (MQ=255)

                           aaTGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGAc                                                                                                               >  2:830517/1‑151 (MQ=255)

                                   ttGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGAt                                                                                                        >  1:386259/1‑150 (MQ=255)

                                    tGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATa                                                                                                       <  1:727912/150‑1 (MQ=255)

                                        ggTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCGATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACa                                                                                                    <  2:254426/149‑1 (MQ=255)

                                        ggTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACAtt                                                                                                  >  2:135969/1‑151 (MQ=255)

                                            cTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg                                                                                              >  1:630513/1‑151 (MQ=255)

                                             ttAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATgg                                                                                             >  2:645586/1‑151 (MQ=255)

                                             ttAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATgg                                                                                             >  1:977432/1‑151 (MQ=255)

                                              tAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATgg                                                                                             <  1:612688/150‑1 (MQ=255)

                                                   gAAGGGTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGt                                                                                       >  1:872543/1‑151 (MQ=255)

                                                    aaGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGtt                                                                                      >  1:283710/1‑151 (MQ=255)

                                                          cGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGcc                                                                                >  2:121076/1‑151 (MQ=255)

                                                            aTGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGcc                                                                                >  2:82463/1‑149 (MQ=255)

                                                              ggTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGc                                                                             <  1:599882/150‑1 (MQ=255)

                                                                          tcGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACg                                                                >  1:825638/1‑151 (MQ=255)

                                                                           cGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACg                                                                <  1:773931/150‑1 (MQ=255)

                                                                            gTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTc                                                              <  2:45027/151‑1 (MQ=255)

                                                                            gTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTc                                                              <  2:593983/151‑1 (MQ=255)

                                                                              tcttcCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCg                                                             <  2:144780/150‑1 (MQ=255)

                                                                                 tcCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCt                                                         >  2:59049/1‑151 (MQ=255)

                                                                                    tGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTg                                                        >  1:237213/1‑149 (MQ=255)

                                                                                      aTTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTg                                                    >  1:807708/1‑151 (MQ=255)

                                                                                        tATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGa                                                   <  2:681857/150‑1 (MQ=255)

                                                                                           ccAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAAt                                               >  1:670110/1‑151 (MQ=255)

                                                                                               cGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCt                                           >  1:388883/1‑151 (MQ=255)

                                                                                                gTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTg                                          <  2:122448/151‑1 (MQ=255)

                                                                                                gTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTg                                          >  1:873787/1‑151 (MQ=255)

                                                                                                  ttCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGtt                                        >  1:314230/1‑151 (MQ=255)

                                                                                                   tCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTg                                       >  2:863469/1‑151 (MQ=255)

                                                                                                      gCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTg                                       <  1:438491/148‑1 (MQ=255)

                                                                                                      gCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACg                                    >  1:913656/1‑151 (MQ=255)

                                                                                                       cTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACg                                    >  2:764793/1‑150 (MQ=255)

                                                                                                       cTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGt                                   >  2:67515/1‑151 (MQ=255)

                                                                                                         aaTGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACg                                    <  1:764835/148‑1 (MQ=255)

                                                                                                          aTGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCa                                <  2:738579/151‑1 (MQ=255)

                                                                                                           tGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCAt                               >  2:476106/1‑151 (MQ=255)

                                                                                                                     gCAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCg                     >  2:779633/1‑151 (MQ=255)

                                                                                                                      cAGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCGGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGc                    <  1:197095/151‑1 (MQ=255)

                                                                                                                       aGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGc                    >  2:880028/1‑150 (MQ=255)

                                                                                                                       aGAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCt                   >  2:723555/1‑151 (MQ=255)

                                                                                                                        gAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCt                   >  1:413279/1‑150 (MQ=255)

                                                                                                                        gAACTGAAGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTa                  <  1:838595/151‑1 (MQ=255)

                                                                                                                              aaGCGACCAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCa            <  2:915177/151‑1 (MQ=255)

                                                                                                                                    ccAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATc      >  2:690329/1‑151 (MQ=255)

                                                                                                                                    ccAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATc      <  1:1003571/151‑1 (MQ=255)

                                                                                                                                     cAATTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATcc     >  1:692354/1‑151 (MQ=255)

                                                                                                                                      aaTTAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTAATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCa    <  2:593543/151‑1 (MQ=255)

                                                                                                                                         tAACGCCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCTGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAAt  <  2:361278/150‑1 (MQ=255)

GCAGTTTGCCCAACATAAGAAACAGTCAATGGTAATTGCTGGTTCTTAACAGAAGGTTCGATGGTAAGTTTTTCTCGTTCTTCCTGATTATCCAGCGTTTCTGCTAATGCAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATGGCATTGTTATAGCCAGCAATTTGCCCCACGTCGGGCTGAGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAAT  >  NC_000913/2097880‑2098166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A