Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F103 I0 R1 1593 59.4 2889406 94.0% 2716041 140.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 6,128,087 T→C 84.1% intergenic (‑203/‑719) PP_5375 ← / → PP_5376 LysR family transcriptional regulator/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029476,128,0870TC84.1% 145.1 / 17.6 63intergenic (‑203/‑719)PP_5375/PP_5376LysR family transcriptional regulator/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (6/4);  new base C (24/29);  total (30/33)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.74e-01

CTCCCTAACGCATTCAGGGCAGAACGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGATTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCATGTAATGA  >  NC_002947/6127939‑6128233
                                                                                                                                                      |                                                                                                                                                   
ctccCTAACGCATTCAGGGCAGAACGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGAt                                                                                                                                                     >  8:57796/1‑149 (MQ=255)
    cTAACGCATTCAGGGCAGAACGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGATTGaa                                                                                                                                                 <  1:228078/149‑1 (MQ=255)
          cATTCAGGGCAGAACGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATa                                                                                                                                           <  4:296539/149‑1 (MQ=255)
            ttCAGGGCAGAACGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAg                                                                                                                                          >  4:169363/1‑148 (MQ=255)
                  gCAGAACGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑Tg                                                                                                                                  <  2:277249/149‑1 (MQ=255)
                     gAACGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTc                                                                                                                               <  3:355072/149‑1 (MQ=255)
                      aaCGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑Tg                                                                                                                                  >  3:32457/1‑145 (MQ=255)
                      aaCGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑Tg                                                                                                                                  <  4:32457/145‑1 (MQ=255)
                           aGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑Tg                                                                                                                                  >  6:75508/1‑140 (MQ=255)
                           aGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑Tg                                                                                                                                  <  5:75508/140‑1 (MQ=255)
                           aGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATCACATTGAACTCGTCGTGCATTGTGTGACAGTGAACAACC‑‑CGACTGAATACATAGAACCG‑TGGTCAccc                                                                                                                           >  7:89183/1‑147 (MQ=255)
                                 cGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTcag                                                                                                                   <  4:170371/149‑1 (MQ=255)
                                    ttCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTcagcag                                                                                                                >  8:55767/1‑149 (MQ=255)
                                      cACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCagcagc                                                                                                               <  2:291099/148‑1 (MQ=255)
                                       aCTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCagcagc                                                                                                               >  6:28791/1‑147 (MQ=255)
                                         tataCTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAg                                                                                                            >  7:342757/1‑148 (MQ=255)
                                         tataCTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAg                                                                                                            >  5:341021/1‑148 (MQ=255)
                                             cTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCAtgt                                                                                                       >  2:191323/1‑149 (MQ=255)
                                              tGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGt                                                                                                                       >  5:79841/1‑132 (MQ=255)
                                              tGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGt                                                                                                                       <  6:79841/132‑1 (MQ=255)
                                                      tGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGATTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCg                                                                                               <  7:57796/148‑1 (MQ=255)
                                                       gCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGATTGAAGCCATAGCACCG‑Tgg                                                                                                                                 >  8:21677/1‑113 (MQ=255)
                                                       gCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGATTGAAGCCATAGCACCG‑Tgg                                                                                                                                 <  7:21677/113‑1 (MQ=255)
                                                         aGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGc                                                                                           >  2:8824/1‑149 (MQ=255)
                                                            aaGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGctct                                                                                        <  1:191323/149‑1 (MQ=255)
                                                             aGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGCCTCGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGctc                                                                                         <  1:289646/149‑1 (MQ=255)
                                                              gATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTAGGAGCTAtt                                                                                       >  3:102669/1‑148 (MQ=255)
                                                                tatTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGAt                                                                                    <  5:215358/149‑1 (MQ=255)
                                                                  ttCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCGCTGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATc                                                                                   <  1:266875/149‑1 (MQ=255)
                                                                   tCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATca                                                                                  >  5:213194/1‑148 (MQ=255)
                                                                     gTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGAGAGCATGTGGAACTCGGAGCTCTTGATCACAt                                                                               <  7:55767/149‑1 (MQ=255)
                                                                              aTAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTTTGAAAGTGAACAAGC‑‑CGACTGAATCCATAGCACCG‑TGGTCACCAGAGTTCAGCAGCTAGCATGTGGAACTCGTAGCTCTTGATAACATGGATTgggt                                                                      >  5:14882/1‑148 (MQ=255)
                                                                               tAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCGACGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGc                                                                     >  2:7019/1‑149 (MQ=255)
                                                                                        tCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTCATCACATGGCTTGGGGCCAGGATTTc                                                            <  1:8824/149‑1 (MQ=255)
                                                                                            aaTCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAg                                                        <  6:213194/149‑1 (MQ=255)
                                                                                                  ttttAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTtgct                                                  >  5:139206/1‑149 (MQ=255)
                                                                                                  ttttAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTtgct                                                  <  8:342757/149‑1 (MQ=255)
                                                                                                       aTGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGATTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCtt                                             >  6:200509/1‑149 (MQ=255)
                                                                                                       aTGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCtt                                             <  5:28791/149‑1 (MQ=255)
                                                                                                        tGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTg                                            >  3:93441/1‑149 (MQ=255)
                                                                                                        tGACAATGCACGCGGCGTGCAATGTGTGACAGTGAACAAGG‑‑CCACTGAAGCCAAAGCACCG‑TGGTCACCCGAGTTCAGCACCGACCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTg                                            <  4:102669/149‑1 (MQ=255)
                                                                                                           cATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGa                                         <  4:321597/149‑1 (MQ=255)
                                                                                                            aTTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGa                                         >  1:286602/1‑148 (MQ=255)
                                                                                                                  cgcgGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGccc                                  <  6:341021/149‑1 (MQ=255)
                                                                                                                    cggcgTGCATTGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAg                                <  8:47107/149‑1 (MQ=255)
                                                                                                                          gCATTGTGTGACAGTGAACAAGC‑‑CGATTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGagag                           >  7:171127/1‑148 (MQ=255)
                                                                                                                           cATTGTGTGACAGTGAACAAGC‑‑CGATTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGGCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGagct                         >  3:297029/1‑148 (MQ=255)
                                                                                                                             ttGTGTGACAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGagcag                        >  7:300346/1‑148 (MQ=255)
                                                                                                                                    aCAGTGAACAAGC‑‑CGATTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTcc                >  6:79062/1‑149 (MQ=255)
                                                                                                                                     cAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGc                                                                     <  2:82217/95‑1 (MQ=255)
                                                                                                                                     cAGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGc                                                                     >  1:82217/1‑95 (MQ=255)
                                                                                                                                      aGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCtt              >  1:143439/1‑149 (MQ=255)
                                                                                                                                      aGTGAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCtt              >  3:315995/1‑149 (MQ=255)
                                                                                                                                         gAACAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTtct            <  4:93441/148‑1 (MQ=255)
                                                                                                                                          aaCAAGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCa          <  4:315995/149‑1 (MQ=255)
                                                                                                                                             aaGC‑‑CGATTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCATg        >  7:291644/1‑148 (MQ=255)
                                                                                                                                              aGC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCATGTa      <  8:300346/149‑1 (MQ=255)
                                                                                                                                               gC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCGACGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCATGTaa     <  1:7019/149‑1 (MQ=255)
                                                                                                                                               gC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAg                                                                  <  2:121693/88‑1 (MQ=255)
                                                                                                                                               gC‑‑CGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAg                                                                  >  1:121693/1‑88 (MQ=255)
                                                                                                                                                c‑‑cGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCAt         >  2:196975/1‑144 (MQ=255)
                                                                                                                                                c‑‑cGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCAt         <  1:196975/144‑1 (MQ=255)
                                                                                                                                                c‑‑cGACTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCATGTAAt    <  6:139206/149‑1 (MQ=255)
                                                                                                                                                    gATTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCATGTAATGa  <  5:79062/149‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                   
CTCCCTAACGCATTCAGGGCAGAACGAAGCAACCGGTTCACTATACTGCACATTTGCAGAAAGATATTCGTTCCCTGAATAGGCAATATCCCAATCACTTTTAATGACATTGAACGCGGCGTGCATTGTGTGACAGTGAACAAGC‑‑CGATTGAAGCCATAGCACCG‑TGGTCACCCGAGTTCAGCAGCGAGCATGTGGAACTCGGAGCTCTTGATCACATGGCTTGGGGCCAGGATTTCGAAGGTTGCTGCCTTGGGATCAGCCCAGGAGAGCAGCAAATTCCTTCTCATGTAATGA  >  NC_002947/6127939‑6128233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A