Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 774,661 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583774,6610GC99.0% 690.8 / NA 298intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/3);  new base C (155/138);  total (156/142)
Fisher's exact test for biased strand distribution p-value = 1.07e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP042583774,6620CG99.7% 692.2 / NA 298intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (155/141);  total (156/142)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP042583774,6630TA99.3% 706.9 / NA 298intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  major base A (154/141);  minor base G (1/1);  total (156/142)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 298 total aligned reads displayed.

AACGCGTCACGCCGAGCGCTTTCACTTCCTGCTCTACCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGACTAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATGCTCATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCGCTAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCACTGTTTCGCACGCTGACCAGTGCATATTGCCCGGCGCGATATG  >  CP042583/774381‑774938
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                   
accgcgTCCCGCGGAGTGCTTGCCCCTCATGCTCGACCCAATCCACAGACGGAGCCGGGCCGGAGGTATTCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCGGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTGCCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAAt                                                                                                                                                                                                                                                                               <  2:393522/287‑1 (MQ=255)
      tCACGCCGAGCGCTTTCACTTCCTGCTCTACCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGt                                                                                                                                                                                                                                                                         >  1:1261640/1‑289 (MQ=255)
       cACGCCGAGCGCTTTCACTTCCTGCTCTACCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTg                                                                                                                                                                                                                                                                        <  2:1084366/289‑1 (MQ=255)
              aGCGCTTTCACTTCCTGCTCTACCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCCGCGACGCATCGACATCAGCGGAGTGAcgccc                                                                                                                                                                                                                                                                  >  2:1073944/1‑287 (MQ=255)
              aGCGCTTTCACTTCCTGCTCTACCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACCTAATCGGCGTGAcgccgc                                                                                                                                                                                                                                                                 >  1:1483321/1‑289 (MQ=255)
                             tGCTCTACCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCa                                                                                                                                                                                                                                                  >  1:987154/1‑289 (MQ=255)
                             tGCTCTACCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCa                                                                                                                                                                                                                                                  >  1:1534837/1‑289 (MQ=255)
                             tGCTCTACCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCAGCAGCCTGCCGCCAGCa                                                                                                                                                                                                                                                  >  1:432856/1‑289 (MQ=255)
                               ccctACCCAACCCACATACGGGGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAAc                                                                                                                                                                                                                                                <  1:966385/287‑1 (MQ=255)
                                   aCCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGa                                                                                                                                                                                                                                            >  1:575465/1‑289 (MQ=255)
                                   aCCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGa                                                                                                                                                                                                                                            >  1:905290/1‑289 (MQ=255)
                                         tCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCTTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTa                                                                                                                                                                                                                                       >  1:1928851/1‑288 (MQ=255)
                                           cATATACGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTAtct                                                                                                                                                                                                                                    <  1:1822886/289‑1 (MQ=255)
                                              ataCGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCCGCAACAGGAATTTAtct                                                                                                                                                                                                                                    >  1:1948382/1‑286 (MQ=255)
                                              ataCGGAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTAtct                                                                                                                                                                                                                                    >  1:10057/1‑286 (MQ=255)
                                                   gAGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGGTCTTCGCAAGCCCGCGACGCATCGACCTAATCCGCGTGCCGCACCAGCCTGCCGCCCGCAACAGGAATTTCACTTCTGCttt                                                                                                                                                                                                                            >  2:1170052/1‑289 (MQ=255)
                                                    aGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCCACGACCTAATCGGCGGTACTCCGCAGCCTGCCGCCAGCAACAGGCATTTCACTTACGCTTTa                                                                                                                                                                                                                           >  2:1435329/1‑289 (MQ=255)
                                                    aGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTa                                                                                                                                                                                                                           >  2:1707766/1‑289 (MQ=255)
                                                    aGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTa                                                                                                                                                                                                                           >  1:1461039/1‑289 (MQ=255)
                                                    aGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTa                                                                                                                                                                                                                           >  1:469791/1‑289 (MQ=255)
                                                    aGCCGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTa                                                                                                                                                                                                                           >  1:1188240/1‑289 (MQ=255)
                                                      ccGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTAt                                                                                                                                                                                                                          <  2:987154/288‑1 (MQ=255)
                                                       cGGGCCGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTAtcg                                                                                                                                                                                                                        >  1:1523773/1‑289 (MQ=255)
                                                           ccGCAGGTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGc                                                                                                                                                                                                                    >  1:1596313/1‑289 (MQ=255)
                                                                ggTCATCACGGTACGTGAAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCCTCCACATAATCGGCGTGACGCCGCACCCTTCCGCCAGCAACCGGCATGTAACTTCAGCTTTATCGTCCCTGGTa                                                                                                                                                                                                               >  2:940698/1‑289 (MQ=255)
                                                                   aatcaCGTTACGTGAAGCTAAGACAGGTACACCTGCCAGCAGTTCGTGAGTGGGACGACCAGCGATATAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCAGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAGTCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTTCTTTATCGTCGCAGGTaaa                                                                                                                                                                                                             <  1:2010999/287‑1 (MQ=255)
                                                                           tacgtgaaGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAgg                                                                                                                                                                                                                                             <  2:2212460/241‑1 (MQ=255)
                                                                           tacgtgaaGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCa                                                                                                                                                                                                     >  1:342562/8‑288 (MQ=255)
                                                                           tacgtgaaGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCa                                                                                                                                                                                                     >  1:1859239/8‑288 (MQ=255)
                                                                           tacgtgaaGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCa                                                                                                                                                                                                     >  1:1660295/8‑288 (MQ=255)
                                                                             cgtgaaGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATc                                                                                                                                                                                                   >  2:345574/6‑288 (MQ=255)
                                                                                     tAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCTTCGCAGGTAAATTCCCCCATCGCGTccg                                                                                                                                                                                            <  2:575465/287‑3 (MQ=255)
                                                                                     tAACTCAGGTACAACTGCCAGCAGTTCGCGAGTGCGACGACCGCCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAAAATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTccga                                                                                                                                                                                           <  2:1865163/288‑4 (MQ=255)
                                                                                         gcAGGTACACCTGCCGGCAGTTGGGAAGTGAGCGGACCAGCGATAAAGCCTTCGGTAACGTTATTTCCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCGGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTccgaaagc                                                                                                                                                                                       <  2:1832598/287‑8 (MQ=255)
                                                                                          cAGGTACACCTGGCAGCAGTTGGCGAGTGAGACGACCAGGGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTccgaaagc                                                                                                                                                                                       <  1:940698/287‑8 (MQ=255)
                                                                                          cAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCGGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTccgaaagc                                                                                                                                                                                       <  1:411049/287‑8 (MQ=255)
                                                                                                cacCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATa                                                                                                                                                                               >  1:1037429/1‑289 (MQ=255)
                                                                                                  ccTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAAt                                                                                                                                                                             <  2:334611/289‑1 (MQ=255)
                                                                                                     gCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTAtc                                                                                                                                                                                                                                     <  1:1101440/230‑1 (MQ=255)
                                                                                                     gCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCa                                                                                                                                                                           >  2:1343616/1‑288 (MQ=255)
                                                                                                     gCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCa                                                                                                                                                                           >  2:684025/1‑288 (MQ=255)
                                                                                                       cagcagTTCGCCAGTGAGACGACCAGCGTTAAAGCCTTCGGTACCGTTATTTTCTGCCCCCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCCCATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCAcc                                                                                                                                                                         <  2:495224/288‑1 (MQ=255)
                                                                                                               cgcgAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCCTCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCACCGCCTCCGACAGCTAGAGATCATCTCCGCGgttttc                                                                                                                                                                >  2:1553549/1‑287 (MQ=255)
                                                                                                               cgcgAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTAc                                                                                                                                                                >  1:1730969/1‑289 (MQ=255)
                                                                                                                         acgacCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGt                                                                                                                                                       <  1:1144960/288‑1 (MQ=255)
                                                                                                                                           ttCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTAtcgtcg                                                                                                                                                                                                                     >  1:1304421/1‑208 (MQ=255)
                                                                                                                                           ttCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGac                                                                                                                                     >  2:199776/1‑288 (MQ=255)
                                                                                                                                           ttCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGac                                                                                                                                     >  1:675817/1‑288 (MQ=255)
                                                                                                                                                tAACGTTATTTTCTGCCACCTGCGTTACCGGATAGTTACGC‑CACTCCTCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATAACCCGCACATCGGCCTGTGGACGGTTCTTCGCGAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGt                                                                                                                                <  2:731676/288‑1 (MQ=255)
                                                                                                                                                   cGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGac                                                                                                                                     >  2:1929217/1‑280 (MQ=255)
                                                                                                                                                   cGTTATTTCCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGtcatc                                                                                                                            >  1:551079/1‑289 (MQ=255)
                                                                                                                                                     ttATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCACACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACCCCGGCATCaa                                                                                                                          >  1:788377/1‑289 (MQ=255)
                                                                                                                                                              gCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATccgccg                                                                                                                   <  1:1693549/287‑1 (MQ=255)
                                                                                                                                                                  ccaGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGt                                                                                                             <  1:1707766/289‑1 (MQ=255)
                                                                                                                                                                      cGTTACCGGATAG‑TACACGCAATTACCGGCGAAATAACCATCATGCGGCGTCCGCA‑GGTATAGTAGAACCCGAACATCGGCCTTTGGACGGTTCTTCGAAAGCCAGCGACGCATCGACATAATCGTCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGTGCCGACACCGTCATCAATCCGCCGCACGGTCAgg                                                                                                         <  2:1139450/289‑1 (MQ=255)
                                                                                                                                                                       gTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCa                                                                                                           <  1:236715/286‑1 (MQ=255)
                                                                                                                                                                                tAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTccgaaagc                                                                                                                                                                                       <  2:14469/201‑8 (MQ=255)
                                                                                                                                                                                tAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTccgaaagc                                                                                                                                                                                       >  1:14469/1‑194 (MQ=255)
                                                                                                                                                                                tAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGt                                                                                                                                                       <  1:22214/233‑1 (MQ=255)
                                                                                                                                                                                    tACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATtcact                                                                                           <  1:1343616/289‑1 (MQ=255)
                                                                                                                                                                                     aCGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCCGCCACTGGGAGCCGACCCCGTCATCAATCCGCCCCACGGTCAGGGTGATATATtaacc                                                                                           >  2:2111165/1‑287 (MQ=255)
                                                                                                                                                                                     aCGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACAACGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCCCCGCCCGGCCAGGGTGATATATtcacc                                                                                           >  2:314481/1‑287 (MQ=255)
                                                                                                                                                                                              cATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCTCGTCCGCCACTGGGAGCCGACACCGTCATCAATCCGCAGCTCGGTCCGGGGGATATATTAACTAACTCCtc                                                                                   >  2:620130/1‑287 (MQ=255)
                                                                                                                                                                                                 cGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAgg                                                                                                         >  1:26617/1‑263 (MQ=255)
                                                                                                                                                                                                 cGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGt                                                                               <  1:1389563/289‑1 (MQ=255)
                                                                                                                                                                                                 cGGCGAAAATAACATCCGGGGGCGTACGCACGTTGTAG‑CTCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGt                                                                               <  2:964322/289‑1 (MQ=255)
                                                                                                                                                                                                       aaaTAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTggagga                                                                         <  1:750536/289‑1 (MQ=255)
                                                                                                                                                                                                         aTAACATCCTGCGGCGTACGCACGTTGTAG‑ATCCCCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGaaa                                                                       <  1:2170551/289‑1 (MQ=255)
                                                                                                                                                                                                         aTAACATCCTGCGGCGTACGAACGTTTGAG‑CTCACCCGAACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGaaa                                                                       <  2:677069/289‑1 (MQ=255)
                                                                                                                                                                                                              aacccgcggctTACGCACGTGGAGG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGgtg                                                                  <  2:1518129/284‑1 (MQ=255)
                                                                                                                                                                                                              aTCCTGCGGCTTACGCACGTGGTAG‑ACCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGgtg                                                                  <  2:1416873/289‑1 (MQ=255)
                                                                                                                                                                                                                  tGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGt                                                                                                             >  2:899362/1‑242 (MQ=255)
                                                                                                                                                                                                                  tGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTaa                                                               >  1:90069/1‑288 (MQ=255)
                                                                                                                                                                                                                       cgTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGat                                                                                                    >  2:1464155/1‑246 (MQ=255)
                                                                                                                                                                                                                         tagacctattctAG‑ACCAACCGCACGTCGCCCTGTGGGCGGTTATTAGCAAGCCAGCGACGCATCGGCATAATCGGCGTGCCGCCGCGGCCTGCCGCCAGCCACAGGAATTTATCTTCTGCTTCAGCGGCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGGGCCGACACCTTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAg                                                       <  2:836200/278‑1 (MQ=255)
                                                                                                                                                                                                                         tACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCa                                                                                                                 >  1:836525/1‑231 (MQ=255)
                                                                                                                                                                                                                         tACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGt                                                                                                             <  1:1803840/235‑1 (MQ=255)
                                                                                                                                                                                                                         tACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGt                                                                                                             >  2:1803840/1‑235 (MQ=255)
                                                                                                                                                                                                                                           ccccGCCCCTCGGCCGGTGGAGGGTTCCTCGAAAGCCAGCGACGCATCGACATAATCGGCGTGACGCGGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGctgagtttc                                      <  2:1683756/288‑9 (MQ=255)
                                                                                                                                                                                                                                           aCCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGGAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGGCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGGGTTTCCGctgagtgtg                                      >  1:351198/1‑281 (MQ=255)
                                                                                                                                                                                                                                           aCCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGCTAATCACCGCGTTTTACATCGTGCGCCAGCCACTGGGACCCGACACCGTCCTCCATCCCACGCACGGTCAGGGCCATATACTCACTCACGCCTGACGTGGCGGACATGCTGTACGCCCACCACGTTTCCgtccggctt                                       >  2:249876/1‑280 (MQ=255)
                                                                                                                                                                                                                                           aCCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCCTCAATCCGCCGCACGGTCAGGGCGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCAAGCAGCGTTTCCGctgagtttc                                      >  1:615068/1‑281 (MQ=255)
                                                                                                                                                                                                                                           aCCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATtcact                                                                                           <  2:1595159/236‑1 (MQ=255)
                                                                                                                                                                                                                                           aCCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGctgagtttc                                      <  1:1073944/289‑9 (MQ=255)
                                                                                                                                                                                                                                             ccGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGtcatca                                                                                                                           >  2:430216/1‑202 (MQ=255)
                                                                                                                                                                                                                                             ccGCACATCAGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGt                                                                                                             >  2:1537066/1‑216 (MQ=255)
                                                                                                                                                                                                                                               gCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCAcc                                                                                                                                                                         <  2:776571/154‑1 (MQ=255)
                                                                                                                                                                                                                                               gCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCa                                                                                                                 <  1:633332/210‑1 (MQ=255)
                                                                                                                                                                                                                                               gCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGaaa                                                                       >  2:1320439/1‑252 (MQ=255)
                                                                                                                                                                                                                                                      ggCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCTGAGTTTCGCACGCTGAcc                           <  1:1565262/289‑1 (MQ=255)
                                                                                                                                                                                                                                                      ggCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCTGAGTTTCGCACGCTGAcc                           <  1:2111165/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          tgtgGACCGTTCTGCGCAAGCCAGCGACGCATAGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCAGCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCTGAGTTTCGCACGCTGACCAGt                        <  2:2034524/288‑1 (MQ=255)
                                                                                                                                                                                                                                                             ggACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGac                                                                                                                                     <  1:1764157/176‑1 (MQ=255)
                                                                                                                                                                                                                                                                 ggTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGt                                                                                                                                                       >  1:329416/1‑154 (MQ=255)
                                                                                                                                                                                                                                                                   ttcttcGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCTGAGTTTCGCACGCTGACCAGTGCATATTGc               >  1:299646/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                    tcgtcGCAAGCCCGCGACGCATGGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCTGAGTTTCGCACGCTGACCAGTGCATATTGcc              <  2:1281554/285‑1 (MQ=255)
                                                                                                                                                                                                                                                                        cGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCTGAGTTTCGCACGCTGACCAGTGCATATTGcc              >  1:1425897/1‑284 (MQ=255)
                                                                                                                                                                                                                                                                            aGCCGGCGACCCATGGACATGTTCGGCGGGACGCCGCAGGCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCCGGTAAATTCCCCCATCGCGTCCGAAAGCCAGCGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCTGAGTTTCGCACGCTGACCAGTGCATATTGCCCGGCGCGat     <  2:10057/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             gCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGt                                                                                                             <  1:1993297/184‑1 (MQ=255)
                                                                                                                                                                                                                                                                               cAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCTGAGTTTCGCACGCTGACCAGTGCATATTGCCCGGCGCGata    <  1:684025/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                   
AACGCGTCACGCCGAGCGCTTTCACTTCCTGCTCTACCCAATCCATATACGGAGCCGGGCCGCAGGTCATCACGGTACGACTAGCTAAGTCAGGTACACCTGCCAGCAGTTCGCGAGTGAGACGACCAGCGATAAAGCCTTCGGTAACGTTATTTTCTGCCACCAGCGTTACCGGATAGTTACGC‑CACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAG‑ATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATGCTCATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCGCTAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCGCCGCACGGTCAGGGTGATATATTCACTCACGCCTGGCGTGGAGGAAATGGTGTAAGCACGCAGCGTTTCCGCACTGTTTCGCACGCTGACCAGTGCATATTGCCCGGCGCGATATG  >  CP042583/774381‑774938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A