Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,931,313 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,931,3130GC100.0% 620.8 / NA 261intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (124/137);  total (124/137)
*CP0425831,931,3140CG99.6% 618.5 / NA 261intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (123/137);  minor base A (1/0);  total (124/137)
Fisher's exact test for biased strand distribution p-value = 4.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,931,3150TA100.0% 629.0 / NA 261intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (124/137);  total (124/137)

Only 100 of 261 total aligned reads displayed.

TCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCGCTAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTGCTACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACACTTTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAGAATCGGGTCA  >  CP042583/1931036‑1931594
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                       
    aCCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGaaa                                                                                                                                                                                                                                                                             >  2:2190550/1‑288 (MQ=255)
     ccAGGGGAAAATCCGGCCCCCGCAGCAAGAAGCAGGGTGCGAACAAACAGAAAATTCGCTTCAGTATAGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           <  2:2075026/289‑1 (MQ=255)
     ccAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           <  1:1001247/289‑1 (MQ=255)
     ccAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           <  1:903378/289‑1 (MQ=255)
     ccAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           <  1:1698381/289‑1 (MQ=255)
     ccAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           <  1:1557005/289‑1 (MQ=255)
     ccAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           <  1:1463670/289‑1 (MQ=255)
     ccAGGGAAAAATCCGGCCGCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCGTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           <  2:1532118/289‑1 (MQ=255)
         ggAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGCTCTGGCCCCCAGTTTGCGCATCAAAAGATTAGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGCATCAATCTGGTAGGTCTGGTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCa                                                                                                                                                                                                                                                                        >  1:1721333/1‑288 (MQ=255)
          agaaaaTCCGGCCTCCGACTCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGcc                                                                                                                                                                                                                                                                         <  2:900278/284‑1 (MQ=255)
                     ccTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTAACGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAgcg                                                                                                                                                                                                                                                            <  2:2036619/288‑1 (MQ=255)
                                             gAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCCCAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACACACAGCGCCAACATAAACGGAATTACACGcac                                                                                                                                                                                                                                   >  2:1767507/1‑289 (MQ=255)
                                             gAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGcac                                                                                                                                                                                                                                   >  2:386768/1‑289 (MQ=255)
                                               aCTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCacac                                                                                                                                                                                                                                 <  2:1639818/289‑1 (MQ=255)
                                                  aTCAGAAATTTCGCCTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGt                                                                                                                                                                                                                              <  1:245221/289‑1 (MQ=255)
                                                    cAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           >  2:1505092/1‑242 (MQ=255)
                                                    cAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACCGCGCCAACATAAACGGAATTAAACGcacaatgtaa                                                                                                                                                                                                                            >  2:1236679/1‑283 (MQ=255)
                                                      gAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGttttt                                                                                                                                                                                                                          >  2:797322/1‑289 (MQ=255)
                                                         aTTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTttctt                                                                                                                                                                                                                       <  1:589059/289‑1 (MQ=255)
                                                           ttCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTttcttc                                                                                                                                                                                                                      >  1:571284/1‑288 (MQ=255)
                                                             cGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           <  1:962975/233‑1 (MQ=255)
                                                              gCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTcacca                                                                                                                                                                                                                  <  1:749988/289‑1 (MQ=255)
                                                                               tgccatgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           >  2:143701/1‑215 (MQ=255)
                                                                               tgccatgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACg                                                                                                                                                                                                                                                                           <  1:143701/215‑1 (MQ=255)
                                                                               tgccatgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCg                                                                                                                                                                                                 >  1:1586465/1‑289 (MQ=255)
                                                                               tgccatgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCg                                                                                                                                                                                                 >  1:16388/1‑289 (MQ=255)
                                                                                  catgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTg                                                                                                                                                                                              <  1:797322/289‑1 (MQ=255)
                                                                                     ggctgccgaaaGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTc                                                                                                                                                                                           >  2:1060000/10‑289 (MQ=255)
                                                                                     ggctgccgaaaGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTAGCCACCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATACCTGCTCACAGCGCATAAGCTTCATTACTCAACCCGGTATCAACCTGATAGGTCTGTTTGGCAAAACCGATATTCGAACGGACGAGAAACGCCAGCACATACAGCGCCAACATAACCGGAATTAAACGCACAAGGTATTTCTTCACCACGGCGTCAAGCAAAGCGGtaccc                                                                                                                                                                                           >  2:1158892/10‑285 (MQ=255)
                                                                                          ccgaaaGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATaaa                                                                                                                                                                                      >  2:908185/5‑289 (MQ=255)
                                                                                            gaaaGAAATCCCCACAGCCGCGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATaaaaa                                                                                                                                                                                    <  1:10127/287‑1 (MQ=255)
                                                                                                  aaaccacacaGCAAGGTATTCGTACCACTCCCAGTTCTGACCCCCAGTTTGCGAATCAAAAGATTCGCCGGAACACCCTGAAACGCATATACCACAAAGAAAAATCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCt                                                                                                                                                                              <  2:1728357/283‑1 (MQ=255)
                                                                                                  aaTCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCt                                                                                                                                                                              <  1:1270365/289‑1 (MQ=255)
                                                                                                  aaTCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCt                                                                                                                                                                              <  1:376739/289‑1 (MQ=255)
                                                                                                           agcagTGTTGTCGTACCAATCAAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATCTACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACACGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACTGCACCAAGAAAAGCGGTGCACAGAAAATGCTCCTTAGAATAtg                                                                                                                                                                     >  2:1607520/1‑289 (MQ=255)
                                                                                                            gcagTGTTGTCGTACCAATCCAGGTACTGGCCCCCAGTTTGCGCAACAAAAGATTCGCCGGAACAACCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATAtgt                                                                                                                                                                    <  1:2059198/289‑1 (MQ=255)
                                                                                                              agTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCAACACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATAtgt                                                                                                                                                                    <  1:1274680/287‑1 (MQ=255)
                                                                                                                     tCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCATAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGCATATGTGGGCGTTa                                                                                                                                                            >  1:192338/1‑288 (MQ=255)
                                                                                                                     tCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTa                                                                                                                                                            >  1:1340575/1‑288 (MQ=255)
                                                                                                                     tCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTa                                                                                                                                                            >  1:1946861/1‑288 (MQ=255)
                                                                                                                     tCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTGTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCGCATAAAAAGCTCCTTAGaa                                                                                                                                                                         >  1:1096501/1‑275 (MQ=255)
                                                                                                                      cGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTAcc                                                                                                                                                          <  2:571284/289‑1 (MQ=255)
                                                                                                                       gTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCg                                                                                                                                                         >  2:294238/1‑289 (MQ=255)
                                                                                                                          ccAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGCTTCGCCGGAACACCCAGAAACACATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTg                                                                                                                                                      >  1:2119555/1‑289 (MQ=255)
                                                                                                                              tCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGG‑TTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTcaca                                                                                                                                                 >  1:2004211/1‑289 (MQ=255)
                                                                                                                               ccAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTcaca                                                                                                                                                 >  1:1196599/1‑289 (MQ=255)
                                                                                                                                 gggTGCTGGCCCCCAGTTTGAGCATCAAAAGATTCGCCGGAACACCCAGAAACGCACATACCCCAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGc                                                                                                                                               <  2:1399503/288‑1 (MQ=255)
                                                                                                                                   gTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTa                                                                                                                                                                            >  1:344761/1‑258 (MQ=255)
                                                                                                                                   gTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTa                                                                                                                                                                            <  2:344761/258‑1 (MQ=255)
                                                                                                                                     tCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAg                                                                                                                                                                                   <  1:482563/249‑1 (MQ=255)
                                                                                                                                       tGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCACAGCGGTGCTCATCAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGc                                                                                                                                          >  1:532867/1‑288 (MQ=255)
                                                                                                                                        ggCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGc                                                                                                                                                                                             >  1:1308006/1‑236 (MQ=255)
                                                                                                                                            cccAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCCGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAg                                                                                                                                    <  1:1503637/289‑1 (MQ=255)
                                                                                                                                              cAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCCGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTg                                                                                                                                  >  1:2106968/1‑289 (MQ=255)
                                                                                                                                                    gcgcATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGGATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGt                                                                                                                            <  1:2242924/289‑1 (MQ=255)
                                                                                                                                                    gcgcATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGt                                                                                                                            <  1:908185/289‑1 (MQ=255)
                                                                                                                                                    gcgcATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGt                                                                                                                            <  1:1783415/289‑1 (MQ=255)
                                                                                                                                                    gcgcATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGt                                                                                                                            <  1:864544/289‑1 (MQ=255)
                                                                                                                                                         tCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAgcg                                                                                                                                                                                                                                                            >  1:93235/1‑156 (MQ=255)
                                                                                                                                                           aaaaGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATGAGTGGCTggc                                                                                                                     >  2:1895661/1‑287 (MQ=255)
                                                                                                                                                                  tCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAg                                                                                                                                                                                   >  1:2178134/1‑220 (MQ=255)
                                                                                                                                                                  tCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGACAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCacac                                                                                                                                                                                                                                 >  2:2177590/1‑174 (MQ=255)
                                                                                                                                                                                   aaCGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGtt                                                                                                                                                             >  2:258855/1‑225 (MQ=255)
                                                                                                                                                                                       cATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGca                                                                                                                                                                                                                                                                     <  2:606206/117‑1 (MQ=255)
                                                                                                                                                                                        atatACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGaa                                                                                                                                                                                                                                             >  2:195369/1‑140 (MQ=255)
                                                                                                                                                                                        atatACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGt                                                                                                                            >  2:965905/1‑253 (MQ=255)
                                                                                                                                                                                            aCCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGcc                                                                                                                                         <  2:1618280/236‑1 (MQ=255)
                                                                                                                                                                                            aCCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTc                                                                                    <  1:1071933/289‑1 (MQ=255)
                                                                                                                                                                                                caAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGAc                                                                                 >  1:1420696/1‑288 (MQ=255)
                                                                                                                                                                                                 aaaGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAggg                                                                                                                  <  1:1518065/254‑1 (MQ=255)
                                                                                                                                                                                                       aaTGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAAc                                                                         <  1:294238/289‑1 (MQ=255)
                                                                                                                                                                                                        aTGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAAcc                                                                        >  1:1608043/1‑289 (MQ=255)
                                                                                                                                                                                                            cTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGt                                                                    <  1:1236679/289‑1 (MQ=255)
                                                                                                                                                                                                                    aGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCaa                                                             >  1:124550/1‑288 (MQ=255)
                                                                                                                                                                                                                    aGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGGAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCaa                                                             >  2:1788235/1‑288 (MQ=255)
                                                                                                                                                                                                                       gcATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGTTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGcac                                                         <  1:2224703/289‑1 (MQ=255)
                                                                                                                                                                                                                       gcATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAGCATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGc                                                           <  1:1894082/287‑1 (MQ=255)
                                                                                                                                                                                                                       gcATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGca                                                          <  2:1485109/288‑1 (MQ=255)
                                                                                                                                                                                                                       gcATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGc                                                           <  2:1340575/287‑1 (MQ=255)
                                                                                                                                                                                                                          tAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTgg                                                                                                                          >  2:458064/1‑221 (MQ=255)
                                                                                                                                                                                                                            aGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGt                                                                                                                            >  1:740617/1‑217 (MQ=255)
                                                                                                                                                                                                                                 cATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGa                                               >  1:989888/1‑289 (MQ=255)
                                                                                                                                                                                                                                         aaCCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGAcc                                       >  1:1856057/1‑289 (MQ=255)
                                                                                                                                                                                                                                           cccGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCa                                                                                               <  2:1302416/231‑1 (MQ=255)
                                                                                                                                                                                                                                           cccGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCAt                                     >  1:1794356/1‑289 (MQ=255)
                                                                                                                                                                                                                                           cccGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCAt                                     >  1:1959359/1‑289 (MQ=255)
                                                                                                                                                                                                                                                tATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACTCGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCAc                                 <  1:626099/288‑1 (MQ=255)
                                                                                                                                                                                                                                                    aaTCGGGTAGGTCTGTTTGGCAAAACCGATAGTCGAACGGTCGGGAAACGGCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGaa                            <  2:1717546/289‑1 (MQ=255)
                                                                                                                                                                                                                                                     aTCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGccc                                                                                                                                        >  2:746905/1‑180 (MQ=255)
                                                                                                                                                                                                                                                     aTCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGca                                                          >  1:1385627/1‑258 (MQ=255)
                                                                                                                                                                                                                                                          gTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTgg                                                                                                                          >  2:2239988/1‑189 (MQ=255)
                                                                                                                                                                                                                                                            ggttcggTTTGGAAAAACCGGTATTCGAACGGTCGAGAAACGCCAGCGCAGACAGCGCCAAGATAAACGGAATTAAACGCACACGGTTTTCCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCa                    <  2:2119555/283‑1 (MQ=255)
                                                                                                                                                                                                                                                                 tGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTCTGAATACGACCATTCCCCGGAACGGGCCTATTGa                >  2:2220827/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                        cAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAAcc                                                                        >  2:635886/1‑225 (MQ=255)
                                                                                                                                                                                                                                                                        cAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAGAATc        >  2:1272749/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                           aaCCGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGAGTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTCTGAATACGACCATTCACCGGAACCGGATCATGGAGCAAGATCggg     >  2:1859687/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                             ccGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCCTTGAGCAGAATCgggca   >  2:1446871/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                             ccGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCCGaa          >  2:66574/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                             ccGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAGAATCGGGTc   >  1:424124/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                              cGATATTCGAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAGAATCGGGTCa  <  1:2152201/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                       
TCATACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCGCTAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTGCTACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACACTTTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAGAATCGGGTCA  >  CP042583/1931036‑1931594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A