Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,931,313 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,931,3130GC99.6% 658.4 / NA 279intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (142/135);  total (142/137)
Fisher's exact test for biased strand distribution p-value = 4.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,931,3140CG99.3% 651.5 / NA 279intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/2);  new base G (142/133);  total (142/137)
Fisher's exact test for biased strand distribution p-value = 2.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,931,3150TA99.6% 669.8 / ‑6.1 279intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (142/136);  minor base G (0/1);  total (142/137)
Fisher's exact test for biased strand distribution p-value = 4.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 279 total aligned reads displayed.

TACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCGCTAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTGCTA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACACTTTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAGAATCGGGTCA  >  CP042583/1931039‑1931594
                                                                                                                                                                                                                                                                                  |||                                                                                                                                                                                                                                                                                         
 aCCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGaaa                                                                                                                                                                                                                                                                              >  2:1854611/1‑288 (MQ=255)
  ccAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACg                                                                                                                                                                                                                                                                            <  1:455435/289‑1 (MQ=255)
  ccAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACg                                                                                                                                                                                                                                                                            <  1:1854611/289‑1 (MQ=255)
  ccAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACg                                                                                                                                                                                                                                                                            <  2:212989/289‑1 (MQ=255)
  ccAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACg                                                                                                                                                                                                                                                                            <  1:1606280/289‑1 (MQ=255)
      ggAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACg                                                                                                                                                                                                                                                                            <  2:136087/285‑1 (MQ=255)
      ggAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCa                                                                                                                                                                                                                                                                         >  1:519517/1‑288 (MQ=255)
      ggAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCa                                                                                                                                                                                                                                                                         >  1:1681791/1‑288 (MQ=255)
       gAAAAGTCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGcc                                                                                                                                                                                                                                                                          <  1:1323958/286‑1 (MQ=255)
           aaTCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTACCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAt                                                                                                                                                                                                                                                                   >  1:1397006/1‑289 (MQ=255)
                                aGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGaa                                                                                                                                                                                                                                             >  2:1776761/1‑289 (MQ=255)
                                     agTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTaa                                                                                                                                                                                                                                         >  1:956261/1‑288 (MQ=255)
                                          gAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGca                                                                                                                                                                                                                                    <  1:1048441/288‑1 (MQ=255)
                                            aCTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCacac                                                                                                                                                                                                                                 >  1:1180139/1‑289 (MQ=255)
                                             cTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCC‑‑CAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGt                                                                                                                                                                                                                              <  1:882616/289‑1 (MQ=255)
                                                 cAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCTCCGGAACACCCAGAAACGCATATACCACAAAGAAAATTCCTGCTCCCAGCGCATAAACTTCATTACTCAACCCGGTATCAATCTGGTAGGACTGTTTGGCAATACCGATACTCGAA‑CGATCGGGAAACGTGAGCACATCACA‑TGCACACATAAACGGAAATAAACGCAACCGGt                                                                                                                                                                                                                              >  2:1554522/1‑287 (MQ=255)
                                                      aTTTCGCTTCAGTATCGGCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTttctt                                                                                                                                                                                                                       <  1:1364124/289‑1 (MQ=255)
                                                                       gCCCATGCCATGGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAAGTGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCa                                                                                                                                                                                                      >  1:1660871/1‑289 (MQ=255)
                                                                        accatgccattGCTGCAGAAAGAAATCCGCACAGCAGTGTTGTCGTACAAATCCAGGTTCTGGCCCCGAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTAGCAATCTAGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCa                                                                                                                                                                                                      <  2:718760/287‑1 (MQ=255)
                                                                            tgccatgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACAt                                                                                                                                                                                                                                                     >  1:597952/1‑237 (MQ=255)
                                                                            tgccatgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCCCCACGGCGTCAAGCAAAGCg                                                                                                                                                                                                 >  1:1085872/1‑289 (MQ=255)
                                                                            tgccatgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTc                                                                                                                                                                                                           >  2:368446/1‑279 (MQ=255)
                                                                            tgccatgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCg                                                                                                                                                                                                 >  2:137303/1‑289 (MQ=255)
                                                                            tgccatgGCTGCCGAAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAAACCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGCCAAGCAAAGCg                                                                                                                                                                                                 >  1:1465480/1‑289 (MQ=255)
                                                                                      gccgaaaGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTCCTTCACCACGGCGTCAAGCAAAGCGGTGCGCATaa                                                                                                                                                                                       >  2:174972/6‑289 (MQ=255)
                                                                                       ccgaaaGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACg                                                                                                                                                                                                                                                                            >  1:106819/5‑204 (MQ=255)
                                                                                       ccgaaaGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGCCGAGAAACGACCGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCCCGGCGTCAATCAACGCGGTGCTCATaaa                                                                                                                                                                                      >  2:1322905/5‑289 (MQ=255)
                                                                                           aaGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAg                                                                                                                                                                                   <  1:919520/288‑1 (MQ=255)
                                                                                                   cccACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGa                                                                                                                                                                          <  1:137303/289‑1 (MQ=255)
                                                                                                              gttgtCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTggg                                                                                                                                                                 <  2:1338214/287‑1 (MQ=255)
                                                                                                               ttgtCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGt                                                                                                                                                              >  1:930970/1‑289 (MQ=255)
                                                                                                               ttgtCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCCCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCt                                                                                                                                                                              <  1:364699/273‑1 (MQ=255)
                                                                                                                  tCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGcc                                                                                                                                                                                                                                                          >  2:879330/1‑194 (MQ=255)
                                                                                                                    gTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACg                                                                                                                                                                                                                                                                            >  2:1895455/1‑175 (MQ=255)
                                                                                                                    gTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTc                                                                                                                                                                                                           >  2:536228/1‑239 (MQ=255)
                                                                                                                      aCCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGCCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGtt                                                                                                                                                       >  1:1555246/1‑289 (MQ=255)
                                                                                                                       ccAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTg                                                                                                                                                      >  1:1415966/1‑289 (MQ=255)
                                                                                                                         aaTCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCt                                                                                                                                                                                 <  1:497516/260‑1 (MQ=255)
                                                                                                                         aaTCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCAAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCt                                                                                                                                                                                 >  2:497516/1‑260 (MQ=255)
                                                                                                                           tCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTcac                                                                                                                                                  >  1:568514/1‑289 (MQ=255)
                                                                                                                            ccAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTcaca                                                                                                                                                 >  2:584483/1‑289 (MQ=255)
                                                                                                                                gTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCa                                                                                                                                              >  1:262629/1‑288 (MQ=255)
                                                                                                                                    tGGCCCCCCGTTTGCGAATCAAAAGATTCGCCGGAACACCCAGAAACGAATATACCACACAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCACCCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGcc                                                                                                                                         <  2:1398336/289‑1 (MQ=255)
                                                                                                                                    tGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTGACCGTGGTCACAGCAACGc                                                                                                                                          >  2:1474283/1‑288 (MQ=255)
                                                                                                                                     ggCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGAGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGccc                                                                                                                                        <  2:1226984/289‑1 (MQ=255)
                                                                                                                                      ggcacaaGTTTGCGCGTCAAAAGATTGGCCGGAACACCCAGAAACGCATGTACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTGCTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGccc                                                                                                                                        <  2:1520283/282‑1 (MQ=255)
                                                                                                                                      gCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCg                                                                                                                                       >  1:963193/1‑289 (MQ=255)
                                                                                                                                        ccccAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGa                                                                                                                                     <  2:956261/289‑1 (MQ=255)
                                                                                                                                         cccAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAg                                                                                                                                    <  1:1496323/289‑1 (MQ=255)
                                                                                                                                               ttGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTa                                                                                                                              <  1:1347306/289‑1 (MQ=255)
                                                                                                                                                 gcgcATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGt                                                                                                                            <  1:678199/289‑1 (MQ=255)
                                                                                                                                                 gcgcATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGt                                                                                                                            <  2:1140816/289‑1 (MQ=255)
                                                                                                                                                 acgcATCAAAAGATTCGCCCGAACACCCAGAAACGCAGATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGCGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGt                                                                                                                            <  2:561093/288‑1 (MQ=255)
                                                                                                                                                           aGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAggg                                                                                                                  <  1:1127043/289‑1 (MQ=255)
                                                                                                                                                            gATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCt                                                                                                                                                                              <  2:1655211/228‑1 (MQ=255)
                                                                                                                                                               tCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATCACTCAACCCGGTATCAAGCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑TGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTGAAGCAACGCGGTGCTAATAAAATGCTTCTTAGAATAAGTGGGCTTTACCGTTGTCACATCAACGACCGTAGGGATCAGTGGATGTAgggtctt                                                                                                              >  2:843344/1‑285 (MQ=255)
                                                                                                                                                                         acCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGc                                                                                                    <  1:123719/289‑1 (MQ=255)
                                                                                                                                                                                aaCGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCa                                                                                               <  1:758244/287‑1 (MQ=255)
                                                                                                                                                                                     atatACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCCTAAAAAGCTCCTTAGACTATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGCAGGGGCGTTTCAAATTGCAGTCACGATTGa                                                                                        >  2:512014/1‑289 (MQ=255)
                                                                                                                                                                                     atatACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGa                                                                                        >  1:1826559/1‑289 (MQ=255)
                                                                                                                                                                                             caAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGcc                                                                                                                                                                                                                                                          >  2:1085229/1‑119 (MQ=255)
                                                                                                                                                                                             caAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGAc                                                                                 >  1:1900551/1‑288 (MQ=255)
                                                                                                                                                                                             caAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCGGTAGGGGCGTTTCAAATTGCAGTCACGATGGAGTTAGACg                                                                                >  2:642957/1‑289 (MQ=255)
                                                                                                                                                                                             caAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACAGTTGTCACAGCAACGCCCGGAGTGATTATTGGCTGTAGGGGCGTTTCAAATTGAAGTCACGATTGAGTTAGAc                                                                                 >  2:606312/1‑288 (MQ=255)
                                                                                                                                                                                                   aaaTGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCaaa                                                                           >  2:32685/1‑288 (MQ=255)
                                                                                                                                                                                                    ctggCCTGCTCACGGCGCATAAGCTTACTGAGACAACCCGGTATCACTCTGTGAGGGCTGTTTGGCAAAACCGA‑AATGCGACCAGTCGAGAACAGCCAGCACAT‑ACAGCGCCAACAGAGACGGAATTACACGCCCACTGTTTTTCTTCACCACGGCGTCAATCAAAGCGGTGCTCATAAAGAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAAc                                                                         <  2:1067074/286‑1 (MQ=255)
                                                                                                                                                                                                     aTGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAAcc                                                                        >  2:1287225/1‑289 (MQ=255)
                                                                                                                                                                                                     aTGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAAcc                                                                        >  2:1194607/1‑289 (MQ=255)
                                                                                                                                                                                                     aTGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAAcc                                                                        >  1:37691/1‑289 (MQ=255)
                                                                                                                                                                                                            cTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTa                                                                 >  1:1317966/1‑289 (MQ=255)
                                                                                                                                                                                                              cccAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTTGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATc                                                               <  1:1760614/289‑1 (MQ=255)
                                                                                                                                                                                                              cccAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATc                                                               <  2:897769/289‑1 (MQ=255)
                                                                                                                                                                                                                    gcATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGca                                                          <  1:416611/288‑1 (MQ=255)
                                                                                                                                                                                                                      aTAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGACTATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCACATTGCAGTCACGATTGAGTTCGCCGCCAAAACCGGGTTTATCACGcactg                                                       >  1:812283/1‑287 (MQ=255)
                                                                                                                                                                                                                      aTAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGcactg                                                       >  1:1850424/1‑287 (MQ=255)
                                                                                                                                                                                                                      aTAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGcact                                                        <  1:217041/288‑2 (MQ=255)
                                                                                                                                                                                                                      aTAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGc                                                           >  1:301125/1‑285 (MQ=255)
                                                                                                                                                                                                                               aTTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATAtg                                                                                                                                                                     <  2:816385/170‑1 (MQ=255)
                                                                                                                                                                                                                                  acgacatccGGTATCAATCGGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGCAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATAc                                           <  2:750560/282‑1 (MQ=255)
                                                                                                                                                                                                                                    tCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACg                                                                                                                                                                                                                                                                            >  1:820015/1‑63 (MQ=255)
                                                                                                                                                                                                                                      aaCCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCAATGATTTATGAATACGAcc                                       >  1:345669/1‑289 (MQ=255)
                                                                                                                                                                                                                                        cccGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCAt                                     >  1:701/1‑289 (MQ=255)
                                                                                                                                                                                                                                             tATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCt                                                                                                                                                                              <  2:1874595/147‑1 (MQ=255)
                                                                                                                                                                                                                                             tATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCt                                                                                                                                                                              >  1:1874595/1‑147 (MQ=255)
                                                                                                                                                                                                                                                 aagcTGGTAGGTCTGTTTGGCAAATCCGATAATCAAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCTCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTAACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCGCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGaa                            <  2:1423440/286‑1 (MQ=255)
                                                                                                                                                                                                                                                 aaTCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGaa                            <  2:149388/289‑1 (MQ=255)
                                                                                                                                                                                                                                                  aTCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTg                                                                                                     >  1:618589/1‑215 (MQ=255)
                                                                                                                                                                                                                                                  aTCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCggg                                                                     >  1:1564845/1‑247 (MQ=255)
                                                                                                                                                                                                                                                       gTAGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACTCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATAAAGGCCTGATTTATGAATACGACCATTTACCGGACCCGGc                       >  2:229205/1‑288 (MQ=255)
                                                                                                                                                                                                                                                         aGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCa                    <  1:990827/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         aGGTCTGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCa                    <  2:1900551/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         aGGTCTGTTTGGCAAAACCGAGAGTCTAA‑CGGTCGAGAAACTCCAGAAAAT‑ACAACGCCAACATAAACGGAATTAAACGCACACGGTTGTGCTTCACCCCGTCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAACTTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCa                    <  2:923386/289‑1 (MQ=255)
                                                                                                                                                                                                                                                              tGTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGa                >  1:581118/1‑288 (MQ=255)
                                                                                                                                                                                                                                                               gTTTGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGAACTGATTTATGAATACGACCATTCACCGGAACCGGCCCAATGAGc              >  2:1575242/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                tttGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTTAGCa             >  1:1515487/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 ttGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGCTTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAAACGGCTCCTTGAGCAg            >  2:276129/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 ttGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAg            >  1:724975/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 ttGGCAAAACCGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAg            >  1:791682/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          ccGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAg                                                                                                                                                                           <  2:1791666/121‑1 (MQ=255)
                                                                                                                                                                                                                                                                           cGATATTCGAA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAGAATCGGGTCa  <  1:1777526/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                  |||                                                                                                                                                                                                                                                                                         
TACCAGGGAAAAATCCGGCCTCCGCAGCACGAAGCAGAGTGCGAACTATCAGAAATTTCGCTTCAGTATCGGCCCATGCCATGGCTGCGCTAAGAAATCCCCACAGCAGTGTTGTCGTACCAATCCAGGTTCTGGCCCCCAGTTTGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTGCTA‑CGGTCGAGAAACGCCAGCACAT‑ACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACACTTTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCAGAATCGGGTCA  >  CP042583/1931039‑1931594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A