Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	692,354	3 bp→TGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	692,354	0	A	T	99.7%	829.4 / NA	349	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/1); new base T (174/173); total (174/175)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01
*	CP042583	692,355	0	C	G	99.4%	827.7 / NA	349	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/1); major base G (173/173); minor base T (1/1); total (174/175)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	692,356	0	T	A	99.7%	829.1 / NA	349	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/1); new base A (172/174); total (174/175)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 349 total aligned reads displayed.

GGGCCTGGTCAAGATTACGTTCATCAACATAAGCGCGCACCCACACCGGACGCGTTAGACTAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTACTGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCAC‑TTTTCAGCGTTGCCTGCGCCTGGTCGCGGC‑TGGAGCGGGCATTTTCCAGGTCATTTGCGCTAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACGCTAACACCCGCTTTCGCCTGCATCAGGGCAATCTCATACGGCTTGTGATCCAGTTCGCCCAGCAC  >  CP042583/692080‑692635

                                                                                                                                                                                                                                                                                   ||||

gggCCTGGTCAAGATTACGTTCATCAACATAAGCGCGCACCCACACCGGACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGc                                                                                                                                                                                                                                                                              <  1:932346/289‑1 (MQ=255)

gggCCTGGTCAAGATTACGTTCATCAACATAAGCGCGCACCCACACCGGACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGc                                                                                                                                                                                                                                                                              <  1:2937707/289‑1 (MQ=255)

                 cGTTCATCAACATAAGCGCGCACCCACACCGGACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTcgcgcg                                                                                                                                                                                                                                                             >  1:2296396/1‑287 (MQ=255)

                       tcaACATAAGCGCGCACCCACACCGGACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTcgcgcgaggagc                                                                                                                                                                                                                                                       <  1:3131972/289‑9 (MQ=255)

                       tcaACATAAGCGCGCACCCACACCGGACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTCACCCTTTCCTG‑ATTTCAGCGTTGCCTGCGCCCGGTcgcccggggacc                                                                                                                                                                                                                                                       >  2:3131972/1‑280 (MQ=255)

                                   cgcACCCACACCGGACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTcgcgcga                                                                                                                                                                                                                                                            >  2:1967618/1‑269 (MQ=255)

                                     cACCCACACCGGACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAgg                                                                                                                                                                                                                                        >  1:1393301/1‑289 (MQ=255)

                                     cACCCACACCGGACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAgg                                                                                                                                                                                                                                        >  1:2436351/1‑289 (MQ=255)

                                             ccGGACGCGTTAGTGACACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTgc                                                                                                                                                                                                                                <  1:1533877/289‑1 (MQ=255)

                                              cGGACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTcgcgcg                                                                                                                                                                                                                                                             <  1:2162769/260‑3 (MQ=255)

                                                gACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTgccga                                                                                                                                                                                                                             >  1:2088134/1‑286 (MQ=255)

                                                gACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTgccga                                                                                                                                                                                                                             >  1:1769475/1‑286 (MQ=255)

                                                gACGCGTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTgccga                                                                                                                                                                                                                             >  1:1420686/1‑286 (MQ=255)

                                                  cgcgTTAGTGAAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTC‑CGCCGAGGCTCGGGCATTTTCCAGGTCAtttcccgaaa                                                                                                                                                                                                                           >  2:555745/1‑282 (MQ=255)

                                                             aaCGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCtt                                                                                                                                                                                                                <  1:2525611/289‑1 (MQ=255)

                                                               cGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGt                                                                                                                                                                                                                                                                   <  2:273600/237‑1 (MQ=255)

                                                                   aaaCACCGGTCCACCTGCATGGAGGACCGGGCCTGGCTCCACCGCGCGCGTTAACCGCGTGCCATCTGACGGGGCTATCGACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCca                                                                                                                                                                                                           <  2:2479846/288‑1 (MQ=255)

                                                                         cGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCa                                                                                                                                                                                                                                     <  2:480846/256‑1 (MQ=255)

                                                                           tGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCtt                                                                                                                                                                                                   >  1:1958954/1‑288 (MQ=255)

                                                                               aCCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTgg                                                                                                                                                                                              <  1:1013543/289‑1 (MQ=255)

                                                                                      ttGAGGACCGTCCCTGGCTCCCCCGCGCGCGTTAAAAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCgg                                                                                                                                                                                           <  2:1689963/285‑1 (MQ=255)

                                                                                           gACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTg                                                                                                                                                                                                                                                                               <  2:1361974/197‑1 (MQ=255)

                                                                                              cGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCg                                                                                                                                                                                                                                                                                  >  2:2217015/1‑191 (MQ=255)

                                                                                              cGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCg                                                                                                                                                                                                                                                                                  <  1:2217015/191‑1 (MQ=255)

                                                                                              cGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGtt                                                                                                                                                                                <  1:1859818/288‑1 (MQ=255)

                                                                                              cGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGt                                                                                                                                                                                 >  1:2648725/1‑287 (MQ=255)

                                                                                                tGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGc                                                                                                                                                                                                                                                                              <  2:653246/193‑1 (MQ=255)

                                                                                                tGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGACATAGTGCGGCTTTTCCACAACCCTTGCTTGCGCTTATATACGTTCt                                                                                                                                                                              >  2:3272132/1‑288 (MQ=255)

                                                                                                tGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGc                                                                                                                                                                                                                     <  1:1736096/249‑1 (MQ=255)

                                                                                                 gCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTg                                                                                                                                                                             <  1:639975/288‑1 (MQ=255)

                                                                                                  ccTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCAtt                                                                                                                                                                                                                                   <  2:2186119/233‑1 (MQ=255)

                                                                                                  ccTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTgc                                                                                                                                                                            >  2:1126495/1‑288 (MQ=255)

                                                                                                    tGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCa                                                                                                                                                                         <  2:1393301/289‑1 (MQ=255)

                                                                                                    tGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCa                                                                                                                                                                         <  1:2264876/289‑1 (MQ=255)

                                                                                                    tGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTACTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCa                                                                                                                                                                         <  1:2835694/289‑1 (MQ=255)

                                                                                                           aCCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑CGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCCCTAAGTCAt                                                                                                                                                                  >  2:2345455/1‑289 (MQ=255)

                                                                                                            ccGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTg                                                                                                                                                                                               >  2:1722336/1‑259 (MQ=255)

                                                                                                            ccGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTg                                                                                                                                                                                               <  1:1722336/259‑1 (MQ=255)

                                                                                                               cgcgcgTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTg                                                                                                                                                                                               <  2:2098507/256‑1 (MQ=255)

                                                                                                                 cgcgTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTTCGGCTTTTCCACAACCCTTGCGGGCGGGTATAGAAGTTCTGCGCGTAGTctgatgtg                                                                                                                                                             >  2:2055575/1‑281 (MQ=255)

                                                                                                                 cgcgTTAACAGCGTGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCa                                                                                                                                                                         >  1:1980195/1‑276 (MQ=255)

                                                                                                                    gTTAACATCGGGCCATCGAACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCtt                                                                                                                                                         <  2:872359/289‑1 (MQ=255)

                                                                                                                              tGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGc                                                                                                                                                                                                                                                                              >  2:1073398/1‑163 (MQ=255)

                                                                                                                              tGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCa                                                                                                                                                                                                                                     >  1:2979374/1‑203 (MQ=255)

                                                                                                                              tGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCa                                                                                                                                                                                                                                     <  2:2979374/203‑1 (MQ=255)

                                                                                                                              tGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCa                                                                                                                                                                         >  1:1937652/1‑263 (MQ=255)

                                                                                                                              tGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGtt                                                                                                                                                >  1:2710066/1‑288 (MQ=255)

                                                                                                                              tGCCATCAGACGGGGCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGtt                                                                                                                                                >  1:1586739/1‑288 (MQ=255)

                                                                                                                                           ggCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAAc                                                                                                                                                                                                       >  1:1343323/1‑220 (MQ=255)

                                                                                                                                           ggCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCGTCCCATAGGCATAGGCCGCTTGCGCCTGTTTCCCCGCTgcggcg                                                                                                                                  >  2:26239/1‑289 (MQ=255)

                                                                                                                                           ggCTATCAACGTTGAGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATGTgccgaaa                                                                                                                                                                                                                           >  1:2576531/1‑195 (MQ=255)

                                                                                                                                                 caacgttgagTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCa                                                                                                                                                                         >  2:337918/10‑244 (MQ=255)

                                                                                                                                                 caacgttgagTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGa                                                                                                                            <  1:2055575/280‑1 (MQ=255)

                                                                                                                                                     gttgagTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGa                                                                                                                        >  2:198255/6‑289 (MQ=255)

                                                                                                                                                       tgagTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCt                                                                                                                                                                                                                 >  2:1270003/4‑198 (MQ=255)

                                                                                                                                                       tgagTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCCGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGc                                                                                                                                                                                             <  2:2540091/215‑1 (MQ=255)

                                                                                                                                                          gTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCa                                                                                                                                                                                                                                                 >  2:1761244/1‑163 (MQ=255)

                                                                                                                                                           tCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGGTATAGCAGTTCTGCGCAAGGTCATCGGCGGCTTGCCCCTGTTTCACCGCTTCGGCGGCCGGCGCGATttct                                                                                                                   >  2:2254241/1‑288 (MQ=255)

                                                                                                                                                                  aaTTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCg                                                                                                           <  1:513986/289‑1 (MQ=255)

                                                                                                                                                                     tCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTcgcgcgaggag                                                                                                                                                                                                                                                        <  1:2991463/146‑8 (MQ=255)

                                                                                                                                                                     tCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCAtt                                                                                                                                                                                                                                   >  1:1675392/1‑166 (MQ=255)

                                                                                                                                                                     tCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGAt                                                                                                         >  2:2586744/1‑288 (MQ=255)

                                                                                                                                                                     tCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATa                                                                                                        <  1:3305298/289‑1 (MQ=255)

                                                                                                                                                                        aCTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCa                                                                                                                                                                         <  1:2617698/221‑1 (MQ=255)

                                                                                                                                                                           ccGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGc                                                                                                  <  1:1292914/289‑1 (MQ=255)

                                                                                                                                                                           ccGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGc                                                                                                  <  2:1502929/289‑1 (MQ=255)

                                                                                                                                                                            cGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCa                                                                                                 >  1:3178350/1‑289 (MQ=255)

                                                                                                                                                                                  cgcCGGTTGGTCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCAt                                                                                            <  2:2865503/288‑1 (MQ=255)

                                                                                                                                                                                       gTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGa                                                                                                          <  1:2023406/269‑1 (MQ=255)

                                                                                                                                                                                         tgcgcctgcgccTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCa                                                                                                                                                                                                                                     >  2:2611169/1‑144 (MQ=255)

                                                                                                                                                                                            gcctgcgccggTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATAc                                                                                  <  1:3013759/288‑1 (MQ=255)

                                                                                                                                                                                                 cgcctgTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCCTAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTTCGATACCCGGCAAGCATCAGGTACTACTgccc                                                                             >  2:3013759/1‑286 (MQ=255)

                                                                                                                                                                                                 cgcctgTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCa                                                                                                                >  2:837067/1‑253 (MQ=255)

                                                                                                                                                                                                 cgcctgTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCa                                                                                                                <  1:837067/253‑1 (MQ=255)

                                                                                                                                                                                                        tCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCCATTTCTTCATTGCGATACCCGGCAAGCATCAGGCCATCCttgcccttgtcc                                                                      >  2:3097681/1‑277 (MQ=255)

                                                                                                                                                                                                            ggctggctTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCca                                                                                                                                                                                                           <  1:1141277/151‑1 (MQ=255)

                                                                                                                                                                                                            ggctggctTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCt                                                                                                                                                                                                <  2:1198036/162‑1 (MQ=255)

                                                                                                                                                                                                                       gCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCtt                                                      <  1:3097681/289‑1 (MQ=255)

                                                                                                                                                                                                                             gctagtcccTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGcc                                                 <  2:2290514/281‑1 (MQ=255)

                                                                                                                                                                                                                             gCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGcc                                                 <  1:710385/288‑1 (MQ=255)

                                                                                                                                                                                                                                 tGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCa                                                                                                                                                                         >  2:1825644/1‑164 (MQ=255)

                                                                                                                                                                                                                                   tCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGa                                                                                                                        <  1:1123565/211‑1 (MQ=255)

                                                                                                                                                                                                                                      tGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGCCTGCATCAggg                                       <  1:1198230/289‑1 (MQ=255)

                                                                                                                                                                                                                                      tGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGCCTGCATCAggg                                       <  2:1586739/289‑1 (MQ=255)

                                                                                                                                                                                                                                       gTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGcc                                                                                                                                                    >  1:1800272/1‑179 (MQ=255)

                                                                                                                                                                                                                                        ttCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCa                                                                                                                                                                         >  1:1041480/1‑157 (MQ=255)

                                                                                                                                                                                                                                         tCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGCCTGCATCAGGGCa                                     <  1:2673108/288‑1 (MQ=255)

                                                                                                                                                                                                                                             ggTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGTTACCCGGCAAGCATCAGGTCATATCGCCCCTGTTCCACCGAAAAACCCGCTTTCTCCTGCATCAGGGCAAtctc                                >  1:607633/1‑289 (MQ=255)

                                                                                                                                                                                                                                             ggTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCCAGCATCAGTTCAGACTGCGCCTGTGCAACCGCACCACCCGCTTTCGCCGGCATCAGGGCAAtct                                 >  2:3221127/1‑288 (MQ=255)

                                                                                                                                                                                                                                               tatccGGAAC‑GTACTTGACGCAATTT‑TCCCTTGCACGATTGCAGCGTTGCCTGCGCCTTGTCGCCCG‑AGGGGCGGGCATTTTCCAGCTCATTTGCCGAAATAGTGCTGCTTTTCCCCCACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGCCTGCATCAGGGCAATCTCAt                              <  2:2795856/286‑1 (MQ=255)

                                                                                                                                                                                                                                                  ccGGACCGGGTC‑TGACGTAATTTACCCTGTGCTG‑ATTTCAGGGTTGCCGGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGCCTGCATCAGGGCAATCTCATACg                           <  2:434920/289‑1 (MQ=255)

                                                                                                                                                                                                                                                  ccGGAACGGTAC‑TGACGCAATTTGTCCGTTGCTG‑ATTTCAGCGTTGCCGGCGCCTGGTCGGGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGCCTGCATCAGGGCAATCTCATACg                           <  2:1911881/289‑1 (MQ=255)

                                                                                                                                                                                                                                                  ccGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGc                                                                                                                                                                                             >  2:2693594/1‑127 (MQ=255)

                                                                                                                                                                                                                                                  ccGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCa                                                                                                                <  1:387811/204‑1 (MQ=255)

                                                                                                                                                                                                                                                  ccGGAACGGTAC‑TGACGCAATTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTAATTGCGATACCCGGCAAGCATCAGGTCATACCGCGCCTGTGCCACCGAAACACCCGCTTTCGCCGGCATCAGAGCAATCGCATACg                           >  1:3227530/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                      aTTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGt                                                                                                                                                                                          >  1:2562041/1‑111 (MQ=255)

                                                                                                                                                                                                                                                                      aTTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGc                                                                                                  <  2:1769666/199‑1 (MQ=255)

                                                                                                                                                                                                                                                                      aTTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGCCTGCATCAGGGCAATCTCATACGGCTTGTGATCCAGTTCGc         >  1:2761651/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                      aTTTATCCTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCCCCTGCATCAGGGCAATCTCATACGGCTCTTCATCCAGTTctc         >  2:2907018/1‑286 (MQ=255)

                                                                                                                                                                                                                                                                            ccTGTGCTG‑ATTTCAGCGTTGCCTGCGCCTGGTCGCGCG‑AGGAGCGGGCATTTTCCAGGTCATTTGCCGAAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACCGAAACACCCGCTTTCGCCTGCATCAGGGCAATCTCATACGGCTTGTGATCCAGTTCGCCCAGCAc  <  1:451541/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                                   ||||

GGGCCTGGTCAAGATTACGTTCATCAACATAAGCGCGCACCCACACCGGACGCGTTAGACTAACGGTAAACACCGTGCCACCTTCATTGAGGACCGTGCCTGGCTCCACCGCGCGCGTTAACAGCGTGCCATCAGACGGGGCTATCAACGTACTGTCCTGTAAATTCAACTCCGCCTGCGCCAGTTGCGCCTGCGCCTGTTCGAGGCTGGCTTTCGCCTGAGCGATGTCCTGTTCACGGTTACCGGAACGGTAC‑TGACGCAATTTATCCTGTGCAC‑TTTTCAGCGTTGCCTGCGCCTGGTCGCGGC‑TGGAGCGGGCATTTTCCAGGTCATTTGCGCTAATAGTGCGGCTTTTCCACAACCCTTGCTGGCGGTTATAGAAGTTCTGCGCATAGTCATAGGCGGCTTGCGCCTGTTTCACCGCTGCGGCGGCCTGAGCGATTTCTTCATTGCGATACCCGGCAAGCATCAGGTCATACTGCGCCTGTGCCACGCTAACACCCGCTTTCGCCTGCATCAGGGCAATCTCATACGGCTTGTGATCCAGTTCGCCCAGCAC  >  CP042583/692080‑692635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A