Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,811,710 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,811,7100AT99.6% 535.0 / NA 229intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base T (103/124);  total (103/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,811,7110CG98.7% 526.8 / NA 229intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base G (101/123);  total (103/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,811,7120TA99.1% 531.3 / NA 229intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  major base A (102/123);  minor base G (0/2);  total (103/126)
Fisher's exact test for biased strand distribution p-value = 5.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 229 total aligned reads displayed.

GGTAACGTTGTAAAACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGACT‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAAGCTTACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGGCTTCTAACATCCCGCCAAAGGCATAGAACACGCCAGACAA  >  CP042583/1811431‑1811988
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                     
ggTAACGTTGTAAAACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGGGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACAGAATGTGGACCACATTCACATAATTTCTTACGCGC‑GTTTTTCAGTGC‑ATCCAg                                                                                                                                                                                                                                                                                >  2:1277260/1‑288 (MQ=255)
   aaCGTTGTAAAACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCt                                                                                                                                                                                                                                                                            <  2:1484296/289‑1 (MQ=255)
      gTTGTAAAACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACg                                                                                                                                                                                                                                                                         >  2:1679861/1‑289 (MQ=255)
         gTAAAACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCg                                                                                                                                                                                                                                                                      <  1:98135/289‑1 (MQ=255)
                  gagaCGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGataata                                                                                                                                                                                                                                                             >  2:1430032/1‑289 (MQ=255)
                      cGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCg                                                                                                                                                                                                                                                         <  2:1579132/289‑1 (MQ=255)
                       gCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGc                                                                                                                                                                                                                                                        <  2:1223483/289‑1 (MQ=255)
                       gCAGCCGGCATTTGGTTCATGTGGCCGGATGCGGCTTGAACACCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGCGCGTATGGTAGGCCGGATAAAACGCGCCATCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCATATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCg                                                                                                                                                                                                                                                         <  2:1874563/288‑1 (MQ=255)
                            cGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCtt                                                                                                                                                                                                                                                   <  2:1714308/289‑1 (MQ=255)
                            cGGCATTTGGTTCCTGTCGCCGGAGGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCtt                                                                                                                                                                                                                                                   <  1:1277260/289‑1 (MQ=255)
                                 tgtGGTTCCCGTCGCGCAATGGGGCTTGAACGCCTTATCCGGCCTACAAACCCATACAAATCAGTATGGTGAGCGTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTtgatg                                                                                                                                                                                                                                              <  2:1501546/287‑1 (MQ=255)
                                      ttCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGt                                                                                                                                                                                                                                          <  1:439047/288‑1 (MQ=255)
                                      ttCCAGACGCAGGATGCGGCTGGAACGCCTTATCCCGCCTACAAAACCATACAAAGCATTATGTTGAGCTTAGTGTGGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTAGCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATCTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTa                                                                                                                                                                                                                                         <  2:1025458/289‑1 (MQ=255)
                                        ccTGTCGCCGGATGCGGCTAGAACGCCTTATACGGCCTCAAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCTGATAAAACGCGCCAGCGTTGCATCCGGAATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATAATGATGTTATGTGCGTTTATGACCGAATGCGGACAACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCACTTTGATGATGTACt                                                                                                                                                                                                                                       <  1:1246284/289‑1 (MQ=255)
                                         cTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCACTTTGATGATGTACt                                                                                                                                                                                                                                       >  2:861719/1‑288 (MQ=255)
                                          tGTCGCCGGTTGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGc                                                                                                                                                                                                                                     <  2:849579/289‑1 (MQ=255)
                                           gTCGCCGGATGAGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGGGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCAAATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATGCAGCGCTACGGCGAAGGTAATAATCGCCCCTTGGATGATGTACTTcc                                                                                                                                                                                                                                    >  2:1474516/1‑289 (MQ=255)
                                                cGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAGACCATACAAATCAGTATGTTGAGATTATTGTAGGCCGGATAAAACGGGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTa                                                                                                                                                                                                                                <  2:1771356/288‑1 (MQ=255)
                                                          ttGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACg                                                                                                                                                                                                                      <  2:956133/288‑1 (MQ=255)
                                                          ttGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGc                                                                                                                                                                                                                     <  1:1679861/289‑1 (MQ=255)
                                                          tggcgcgttttATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACg                                                                                                                                                                                                                      <  1:384017/279‑1 (MQ=255)
                                                               cGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGata                                                                                                                                                                                                                <  2:1104224/289‑1 (MQ=255)
                                                               cGCCTTATCCGACCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGata                                                                                                                                                                                                                <  2:161639/289‑1 (MQ=255)
                                                                    taaccGGCCCACAAACCCATACAAATCAGTGTGTTGAGCTTATTGTAGGCCGGGTAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGGGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGt                                                                                                                                                                                                           <  2:1438329/286‑1 (MQ=255)
                                                                    tATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGt                                                                                                                                                                                                           <  1:664606/289‑1 (MQ=255)
                                                                          gCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCTGTGA‑ATCCAGCGCTACGGCGAAGATAAGAATCGCACCTTTGATGATGTACTGCCAGTATGGGTTCACGCCGATATACGTCAGGc                                                                                                                                                                                                      >  1:99424/1‑288 (MQ=255)
                                                                          gCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGCGGATGTACTGCCAGTATGGGGTTAGGCCGATATACGTCAGGcc                                                                                                                                                                                                     >  2:135782/1‑289 (MQ=255)
                                                                          gCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGcc                                                                                                                                                                                                     >  1:1230478/1‑289 (MQ=255)
                                                                           ccTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCa                                                                                                                                                                                                    >  1:1851590/1‑289 (MQ=255)
                                                                            cTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCa                                                                                                                                                                                                    <  1:1746436/288‑1 (MQ=255)
                                                                            cTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCAt                                                                                                                                                                                                   >  1:245564/1‑289 (MQ=255)
                                                                            cTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCAt                                                                                                                                                                                                   >  1:586490/1‑289 (MQ=255)
                                                                                   aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTtgat                                                                                                                                                                                            <  1:415204/289‑1 (MQ=255)
                                                                                    ccATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCATCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCCGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCCTTGATGATGTACTGCCAGTATGGTTTTACGCCGATATACCGCAGGCCATAGTtgat                                                                                                                                                                                            >  2:735532/1‑288 (MQ=255)
                                                                                       tACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACg                                                                                                                                                                                        >  2:1801400/1‑289 (MQ=255)
                                                                                       tACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACg                                                                                                                                                                                        >  2:381658/1‑289 (MQ=255)
                                                                                               aGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAaat                                                                                                                                                                                >  1:378383/1‑289 (MQ=255)
                                                                                                   tGTTGAGGTTATTGTTGGCCGGATAAAACGCGCCCGCGTTGCAGCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAAtt                                                                                                                                                                            <  2:1674807/289‑1 (MQ=255)
                                                                                                      tGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGt                                                                                                                                                                                                                           >  1:606344/1‑239 (MQ=255)
                                                                                                      tGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGt                                                                                                                                                                                                                           <  2:606344/239‑1 (MQ=255)
                                                                                                      tGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTAc                                                                                                                                                                          >  1:818887/1‑288 (MQ=255)
                                                                                                      tGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTAc                                                                                                                                                                          >  2:1411422/1‑288 (MQ=255)
                                                                                                        aGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGc                                                                                                                                                                                                      <  1:243886/258‑1 (MQ=255)
                                                                                                        aGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGc                                                                                                                                                                                                      >  2:243886/1‑258 (MQ=255)
                                                                                                          cTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCgg                                                                                                                                                                     >  1:1891775/1‑289 (MQ=255)
                                                                                                              ttGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTcac                                                                                                                                                                 <  1:1411422/289‑1 (MQ=255)
                                                                                                                gTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTcacca                                                                                                                                                               <  1:73810/289‑1 (MQ=255)
                                                                                                                   ggCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACg                                                                                                                                                             >  2:1175900/1‑288 (MQ=255)
                                                                                                                         aTAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGt                                                                                                                                                                    >  1:789756/1‑275 (MQ=255)
                                                                                                                         aTAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATc                                                                                                                                                       <  1:1506241/288‑1 (MQ=255)
                                                                                                                          taaatgcacccAGCATTGCATCCGGCATTGGGGGACTGTTGGCGGTGGCTACGTGAACGCCGTATCCGGATCAGA‑AAACCGCACAGATTAGAATGTTATGTGCGTTTATGACCGAATGTGGACCACAGTCACATCATTTCGTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGAGGATGTACTGCCAGTATGGGTTTACGCCGCTATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCAc                                                                                                                                                     <  2:641122/280‑1 (MQ=255)
                                                                                                                          tAAAACGGGCCAGTGTTGACTCCGGCACTCTGATTCTGTTGTCGGATGAGGCGTTAACGCCGTATCCGGCC‑ACACAAACCCAACAGATCATTATGTGATGTGGGTTTATGGGCGAATGCGGACCACTTTCACTTCATTTGTTACGCGC‑GTATTAAAGTCG‑ATCGAGCGCTATGGGGAAGATAATAATCGCCCCTTTGATGATGTACAGCCAGTATGGGTTTACGCCGGTATACGTCAGGCCATAGTTCATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCAc                                                                                                                                                     <  2:1121475/289‑1 (MQ=255)
                                                                                                                          tAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCAc                                                                                                                                                     <  1:223440/289‑1 (MQ=255)
                                                                                                                          tAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCAc                                                                                                                                                     <  2:898441/289‑1 (MQ=255)
                                                                                                                                gcgcCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTccc                                                                                                                                               <  1:1690096/289‑1 (MQ=255)
                                                                                                                                            cATCCGGCTTTTGGTCCCTGTTGCCGGATGGGGCTGTAAGCCCTTATCGGGCCTACA‑AAAGCACACAGAGCATGATATTATGTGCGTTTATGACCGAATGCGGGCCCCATTCACCTCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTAAGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCt                                                                                                                                   <  2:724126/289‑1 (MQ=255)
                                                                                                                                            cATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGAACACATTCACATCATTTCTTACGCGC‑GTATTGCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGTCCCTTTGATGATGTACTGCCAGTCTGGGTTTACGCCGATCTACGTCAGGCAATAGTTGATGACGGTAATAAGAATTACCACGGTCACCACGCAAATACACGTCACCACACcgccgc                                                                                                                                    >  2:1305358/1‑288 (MQ=255)
                                                                                                                                             aTCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCt                                                                                                                                   <  1:1175900/288‑1 (MQ=255)
                                                                                                                                             aTCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCt                                                                                                                                   <  1:1491435/288‑1 (MQ=255)
                                                                                                                                                     tttGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGaacgatac                                                                                                                          <  1:861719/289‑7 (MQ=255)
                                                                                                                                                      ttGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGaacgataca                                                                                                                         <  1:156444/289‑8 (MQ=255)
                                                                                                                                                           tCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACCCAGTTCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGc                                                                                                                     <  1:7960/288‑1 (MQ=255)
                                                                                                                                                           tCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGc                                                                                                                     <  1:1214693/288‑1 (MQ=255)
                                                                                                                                                              tGTTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCTTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTAc                                                                                                                 <  1:1305358/289‑1 (MQ=255)
                                                                                                                                                                   ccGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACcacg                                                                                                             <  2:107424/288‑1 (MQ=255)
                                                                                                                                                                    cGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACcacgca                                                                                                           <  1:110767/289‑1 (MQ=255)
                                                                                                                                                                        tGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCCCCACGCCAATCACCCTCCCCACACCGCCGCTGAACGATACACCGCCCAACccccacgc                                                                                                        >  2:86956/1‑288 (MQ=255)
                                                                                                                                                                        tGCGGCGTGAACCCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTCCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCacgcacgc                                                                                                        <  1:1046134/288‑1 (MQ=255)
                                                                                                                                                                          cggcgTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCAcgccgc                                                                                                     >  1:1001423/1‑289 (MQ=255)
                                                                                                                                                                             cgTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCAc                                                                                                                                                     <  2:782226/238‑1 (MQ=255)
                                                                                                                                                                             cgTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGa                                                                                                   <  1:913815/288‑1 (MQ=255)
                                                                                                                                                                              gTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTGTATGACCGAATGCGGACCACATTCACATCATTTCTTACGATC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCAAGTATGGGTTTACGCCGAGATACGTCAGGCCATAGTTGAGGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGAt                                                                                                  <  2:303443/288‑1 (MQ=255)
                                                                                                                                                                                 caCGCCGCATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACcacgca                                                                                                           >  2:1722526/2‑276 (MQ=255)
                                                                                                                                                                                 caCGCCGCATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACcacgca                                                                                                           <  1:1722526/275‑1 (MQ=255)
                                                                                                                                                                                      cTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACcacg                                                                                                             <  1:1073830/269‑1 (MQ=255)
                                                                                                                                                                                                    a‑aaaCCACACAGATCATGATGTTATGTTCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGc                                                                           <  1:135782/289‑1 (MQ=255)
                                                                                                                                                                                                            cacaGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCtt                                                                                                                                                                                                                                                   <  1:259361/114‑1 (MQ=255)
                                                                                                                                                                                                                 aTCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGc                                                                                                                                                                                                                     >  2:437336/1‑139 (MQ=255)
                                                                                                                                                                                                                       atgTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTtgat                                                                                                                                                                                                                                               <  2:25561/107‑1 (MQ=255)
                                                                                                                                                                                                                         gTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGgttgtt                                                                 <  1:504373/279‑1 (MQ=255)
                                                                                                                                                                                                                           tATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGaacgataca                                                                                                                         >  1:893513/1‑214 (MQ=255)
                                                                                                                                                                                                                           tATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAgg                                                                      >  1:1074629/1‑272 (MQ=255)
                                                                                                                                                                                                                           tATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACAACGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGACAGCAGCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGc                                                      >  2:613284/1‑288 (MQ=255)
                                                                                                                                                                                                                               tgCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGAt                                                  >  1:161985/1‑288 (MQ=255)
                                                                                                                                                                                                                                   tttATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCCCGCACGCCGCGATAGCATCCAGCTCACACATAAAGCCGAGGTTGGTGGTGGCAGAGcctgtctgtt                                             >  2:504373/1‑281 (MQ=255)
                                                                                                                                                                                                                                    ttATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCt                                                                                                                                   >  2:341546/1‑202 (MQ=255)
                                                                                                                                                                                                                                    ttATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCACCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATAAGTCAGGCCATAGTTGATGACGGTAAAAATATGTACCACGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGACACAACGCCTACCCCGCACGCCGCGAAACCACCCCGCCCCTCCAATAATCCACGGTTCTTGGTGGCCAAGCCGaaccgacc                                            >  2:559389/1‑282 (MQ=255)
                                                                                                                                                                                                                                       tGAACGAATGCGGACCCCAGTCACATATTTTCGTA‑GCGCGGTTTTTGAGGTA‑AGCCAGGGCTCAGGGGAAGATAATAATCCCCCGTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGGc                                         <  2:22193/289‑1 (MQ=255)
                                                                                                                                                                                                                                                        caTTCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCAc                                                                                                                                                     <  1:1432622/164‑1 (MQ=255)
                                                                                                                                                                                                                                                        caTTCACATCATTTCTTACGAGC‑ATATTTCA‑ACTAATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGCTATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGGCTTCTAACATCCCGCCaa                        <  2:818887/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           tCACATCATTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTAGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGGCTTCTAACATCCCGCCAAAg                      >  2:190366/1‑288 (MQ=255)
                                                                                                                                                                                                                                                             gcatcatTTCTTACGCGC‑GTATTTAAGTGA‑CTCCAGCGCTACGGCGAAGATAAACATCCCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGGCTTCTAACATCCCGCCAAAGGCa                   <  1:1163147/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                 catTTCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGGCTTCTAACATCCCGCCAAAGGCATAGa               <  1:160932/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   tttCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTc                                             <  2:55825/257‑1 (MQ=255)
                                                                                                                                                                                                                                                                   tttCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGGCTTCTAACATCCCGCCAAAGGCATAGAac             >  1:1806829/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   tttCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGACTCCTAACCTCACGCCAAAGGCATAGAac             >  2:719140/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     tCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAgg                                                                      <  2:1528945/230‑1 (MQ=255)
                                                                                                                                                                                                                                                                     tCTTACGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAgg                                                                      >  1:1528945/1‑230 (MQ=255)
                                                                                                                                                                                                                                                                         aCGCGC‑GTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGaacgataca                                                                                                                         <  2:1319164/175‑8 (MQ=255)
                                                                                                                                                                                                                                                                           gcgc‑gTATTTCAGTGA‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAACGATACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGGCTTCTAACATCCCGCCAAAGGCATAGAACACGCCAGa     <  1:461576/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                     
GGTAACGTTGTAAAACCAGAGACGCATCCGGCATTTGGTTCCTGTCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA‑AAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGC‑GTATTTCAGACT‑ATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGTTTACGCCGATATACGTCAGGCCATAGTTGATGACGGTAAAAATAATTACCCCGGTCACCACGCCAATCACCGTCCCCACACCGCCGCTGAAGCTTACACCGCCTACCACGCACGCCGCGATAGCATCCAGCTCATACATAAAGCCGAGGTTGTTGGTGGCAGAGCCGATACGTCCGGCTTCTAACATCCCGCCAAAGGCATAGAACACGCCAGACAA  >  CP042583/1811431‑1811988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A