Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,963,166 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,963,1660GC98.3% 543.3 / NA 234intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (104/126);  minor base A (2/2);  total (106/128)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,963,1670CG99.6% 544.0 / NA 234intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (105/128);  total (106/128)
Fisher's exact test for biased strand distribution p-value = 4.53e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,963,1680TA99.1% 543.8 / NA 234intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (104/126);  minor base G (1/1);  total (106/128)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 234 total aligned reads displayed.

GAAGCCCAGCAGTACCAGCAGCACCACCAGCAACAGGATCATAAACAGCTCACGCAGGCTCATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGGCTATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGGCTCAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCGCTCAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACGCTGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAA  >  CP042583/1962890‑1963446
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                      
       agcagTACCAGCAGCACCACCAGCAACAGGATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCAtt                                                                                                                                                                                                                                                                       >  2:1322236/1‑289 (MQ=255)
       agcagTACCAGCAGCACCACCAGCAACAGGATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCAtt                                                                                                                                                                                                                                                                       >  1:1423772/1‑289 (MQ=255)
          agTACCAGCAGCACCACCAGCAACAGGATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCAtt                                                                                                                                                                                                                                                                       <  2:387858/286‑1 (MQ=255)
          agTACCAGCAGCACCACCAGCAACAGGATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCCTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCGAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCAtt                                                                                                                                                                                                                                                                       <  1:947073/286‑1 (MQ=255)
               cagcagCACCACCAGCAACAGGATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTg                                                                                                                                                                                                                                                               <  1:232961/289‑1 (MQ=255)
                    gcaCCACCAGCAACAGGATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTcc                                                                                                                                                                                                                                                           >  2:168754/1‑288 (MQ=255)
                      accaccAGCAACAGGATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTcc                                                                                                                                                                                                                                                           <  1:1905838/286‑1 (MQ=255)
                      accaccAGCAACAGGATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCcaca                                                                                                                                                                                                                                                        >  1:1286275/1‑289 (MQ=255)
                          ccaGCAACAGGATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATACCAAGCGTTGCCACCGCAACGACCAGCGACAGTGCTGGAAGCCATTTCATCtgcctacaacgac                                                                                                                                                                                                                                                     >  2:1798527/1‑276 (MQ=255)
                                    gATCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCcatcat                                                                                                                                                                                                                                           >  1:1694537/1‑288 (MQ=255)
                                      tCATAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATgcg                                                                                                                                                                                                                                        <  1:462070/289‑1 (MQ=255)
                                        aTAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATgcgc                                                                                                                                                                                                                                       >  2:55272/1‑288 (MQ=255)
                                         tAAACAGCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCAt                                                                                                                                                                                                                                     >  1:726790/1‑289 (MQ=255)
                                               gCTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATgcg                                                                                                                                                                                                                                        >  1:669488/1‑280 (MQ=255)
                                                cTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCGGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTTCCAGGCATCCCAAGCGGTTCCACCGCCAAGAACAGACGCAGTGCCTGCAGCCATTTCATCCTTCTCCACCGACCCCCCACCATTCCCATGCCGCgg                                                                                                                                                                                                                              >  2:22722/1‑289 (MQ=255)
                                                cTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGCTAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCCCAAAGAACAGCGACAGTGCTGGCCGCCATTTCATCTTACTCCACAGACCGCCCATAATGCGCCTGTcgcgt                                                                                                                                                                                                                              >  2:1878400/1‑288 (MQ=255)
                                                cTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAg                                                                                                                                                                                                                                                       <  1:1202600/264‑1 (MQ=255)
                                                cTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAg                                                                                                                                                                                                                                                       >  2:1202600/1‑264 (MQ=255)
                                                cTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCgg                                                                                                                                                                                                                              >  1:122321/1‑289 (MQ=255)
                                                cTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCgg                                                                                                                                                                                                                              >  1:1544610/1‑289 (MQ=255)
                                                cTCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTAACGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGAAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGAAAGTGCTGGCAGCCCTTTCaa                                                                                                                                                                                                                                                                   >  1:1631569/1‑251 (MQ=255)
                                                 tacagcagcaacATCCCTGGCAGTTACTGGCTGGCAATCTGTATTTACACTTTACCGAAGTAAGCGCGATGTAACATCGCAAGCGAATAAACAGATGCAAAGACCAGCCAAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTcgc                                                                                                                                                                                                                                <  2:1358192/275‑1 (MQ=255)
                                                 tCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTcgc                                                                                                                                                                                                                                <  1:1533275/286‑1 (MQ=255)
                                                 tCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTcg                                                                                                                                                                                                                                 <  2:1286275/285‑1 (MQ=255)
                                                 tCACGCAGCGACATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCggg                                                                                                                                                                                                                             >  1:1108015/1‑289 (MQ=255)
                                                          gacATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATAc                                                                                                                                                                                                                    <  1:1003190/287‑1 (MQ=255)
                                                          gacATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATAc                                                                                                                                                                                                                    <  2:1119623/287‑1 (MQ=255)
                                                          gacATACCCGGCCGTGCCTGGCTGGCAATCTGGATTTTCGCTTTACCGAAGTAAGCGGGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATAc                                                                                                                                                                                                                    <  2:1246383/287‑1 (MQ=255)
                                                             aTCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCCGGCAGCCATTTCATCTTGCTCCACAGACCGCCCACTCTGCGCATGTCGCGGGTATGGCTACGtt                                                                                                                                                                                                                 >  2:1015635/1‑289 (MQ=255)
                                                                     cAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATaaa                                                                                                                                                                                                           >  1:894736/1‑287 (MQ=255)
                                                                        ttCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACGACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGATg                                                                                                                                                                                                       >  1:717772/1‑288 (MQ=255)
                                                                            tggctggcAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAGATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGGGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACcac                                                                                                                                                                                                  <  1:132466/289‑1 (MQ=255)
                                                                            tggctggcAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACcac                                                                                                                                                                                                  <  2:726790/289‑1 (MQ=255)
                                                                             ggtgggaaaatgggCTTTTCGCTTAACGGAAGTAGACGCGATGTAACATATGCAGCGAATAAACAGATGCAAAAACGAGACCAAAGGTAGCGATAACGGTAATCAGC‑GGTACACGCGGGAAGCTGCAGAACAGAATCGTCAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCTACGGCAAAGAACAGCGAGAGTGCGGGCAGCCATTTCATTTTGCTCCACAGACCGCCCATGATGCGGATGTCGCGGGTATGGATGAGTGCATAAAGCTGAccga                                                                                                                                                                                                  <  2:1715654/276‑3 (MQ=255)
                                                                                   cAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACCGACCGCCCACCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTCACCCAAAAGaca                                                                                                                                                                                           >  2:1914574/1‑287 (MQ=255)
                                                                                   cAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAAt                                                                                                                                                                                           >  2:780417/1‑289 (MQ=255)
                                                                                          gCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAg                                                                                                                                                                                     >  1:11254/1‑288 (MQ=255)
                                                                                               tCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACccgc                                                                                                                                                                               <  1:811571/289‑1 (MQ=255)
                                                                                                              aaGCGCGATGTAACAACGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTg                                                                                                                                                                <  1:1175102/289‑1 (MQ=255)
                                                                                                               aGCGCGATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATG‑GCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTgc                                                                                                                                                               >  1:335152/1‑288 (MQ=255)
                                                                                                                                ccagcgaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCgg                                                                                                                                                                                                                              <  1:781257/203‑1 (MQ=255)
                                                                                                                                ccagcgaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACcac                                                                                                                                                                                                  >  1:249714/8‑237 (MQ=255)
                                                                                                                                ccagcgaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTa                                                                                                                                               >  2:813028/8‑288 (MQ=255)
                                                                                                                                     gaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACcgcg                                                                                                                                          <  1:55272/286‑1 (MQ=255)
                                                                                                                                     gaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACcgcg                                                                                                                                          <  1:1853387/286‑1 (MQ=255)
                                                                                                                                     gaaacaaCCGATGCACAAGCCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCAGAAATTCGCCGACG‑TAGTTACCGGTGCCAGGCCTCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGGGCATGTCGCGGGTATGGATACGTTCATAAGGGTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACcgcg                                                                                                                                          <  2:1256260/283‑1 (MQ=255)
                                                                                                                                       aaaaaCAGAGGCAAAGGACAGCCCAAAGGTAGAGATAACGGTAACAACC‑GGGAGAACCTGGAAGCGGACGAACAGAATCATAAATTCGCCGAAG‑AAGTGACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCGGCCGACAAACCGTGCGCAATCATCTGGATTACCgcgc                                                                                                                                         <  2:322795/285‑1 (MQ=255)
                                                                                                                                        taAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCt                                                                                                                                      <  1:161389/289‑1 (MQ=255)
                                                                                                                                              gATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAgg                                                                                                                                >  1:308813/1‑289 (MQ=255)
                                                                                                                                               aTGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAgg                                                                                                                                >  1:749092/1‑288 (MQ=255)
                                                                                                                                                tGCAAAGACCAGCCCAAAGGTGGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAACGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGcc                                                                                                                              <  2:936298/289‑1 (MQ=255)
                                                                                                                                                tGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGAc                                                                                                                                                                                   >  2:1561230/1‑236 (MQ=255)
                                                                                                                                                tGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGAc                                                                                                                                                                                   <  1:1561230/236‑1 (MQ=255)
                                                                                                                                                         cAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTg                                                                                                                     <  2:1742183/289‑1 (MQ=255)
                                                                                                                                                         cAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTg                                                                                                                     <  1:1500001/289‑1 (MQ=255)
                                                                                                                                                            cccacagagggagaTAAGGGTAAAGACA‑GTTAGAACCTGGACGCGGCCGAACAGAATCATAACTTCGACGGCG‑AAGTGACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCCAAGAACGGCGACAGTGCTGGCGGCCATTTCATCTTGCTCGACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTAATAAAGCTGACCACAAAGAATAACCAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGcc                                                                                                                   <  2:1774445/278‑1 (MQ=255)
                                                                                                                                                             ccAAAGGTAGAGTGAACGGTAATCCCC‑GGTAAAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGc                                                                                                                    <  2:717179/286‑1 (MQ=255)
                                                                                                                                                               aaaGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCCCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCCGGGAGGCCAACGGGCCGCCtgtg                                                                                                               >  2:1277172/1‑289 (MQ=255)
                                                                                                                                                                aaGGTAGAGATAACGGTAATCACC‑GGTACACCCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGgtgt                                                                                                              <  1:605858/289‑1 (MQ=255)
                                                                                                                                                                 aGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTa                                                                                                             >  1:851197/1‑289 (MQ=255)
                                                                                                                                                                      gagaTAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTg                                                                                                                     <  1:1027253/276‑1 (MQ=255)
                                                                                                                                                                      gagaTAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAACCATCTGGATTACCGCGCCCTGGTAGGCCAACCGGCCGCCGGCGTAGATa                                                                                                         >  2:908346/1‑288 (MQ=255)
                                                                                                                                                                      gagaTAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTCCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGGCTAGaaa                                                                                                         >  2:1824937/1‑286 (MQ=255)
                                                                                                                                                                           aaCGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATc                                                                                                   <  1:908346/289‑1 (MQ=255)
                                                                                                                                                                                tAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCa                                                                                               <  1:1311602/288‑1 (MQ=255)
                                                                                                                                                                                  aTCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGcc                                                                                                                              <  1:825609/255‑1 (MQ=255)
                                                                                                                                                                                  aTCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGa                                                                                            >  2:170976/1‑289 (MQ=255)
                                                                                                                                                                                       c‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGccc                                                                                       <  2:74393/289‑1 (MQ=255)
                                                                                                                                                                                         ggTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCa                                                                                      >  1:323093/1‑289 (MQ=255)
                                                                                                                                                                                          ttACAACCTGGCACCAGCCGACCCGAATCTTAAATTCGCAGACC‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGAATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCa                                                                                      <  2:1544610/287‑1 (MQ=255)
                                                                                                                                                                                                  tGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGaaa                                                                             <  1:394183/289‑1 (MQ=255)
                                                                                                                                                                                                    gAAGCTCCAGACCCGAATCATAAAGTCGCAGACG‑AAGTGACCGGTGCCGGGCATCCCAAGCATTGCACCCGCAAAGAACAGAGACAGGGATGGCAGCCATTGCATCTTGCTCCACAGACCGCCCATCATGCTCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAAc                                                                            <  2:1591690/288‑1 (MQ=255)
                                                                                                                                                                                                     aaGCTGCCCAACCGAATCATAAATTCGCCGACG‑AAGGTACCGGTGCCAGGAATCCCAAGCGTAGCCACCGCAAAGAACAGCGACAGTGCGGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCAGGTCGCGGGTATGGAGACGTTCATAAGGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAAcc                                                                           <  2:796698/288‑2 (MQ=255)
                                                                                                                                                                                                      agacggcgcaCAGAATCATACATGCGCC‑ACGCAAGTGACCGCTGCCAGTCATCCCAAGCGTTGCCACCGCAAGGAACAGCGACGGTGCTGGCAGCCATTTCATCGTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCAGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAAccg                                                                          <  2:445551/279‑3 (MQ=255)
                                                                                                                                                                                                         tGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAAccgag                                                                        <  1:885445/287‑5 (MQ=255)
                                                                                                                                                                                                          gCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCtt                                                                                                                                                                                                                                                                <  2:281129/102‑1 (MQ=255)
                                                                                                                                                                                                          gCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGGAGGCCAACTGGCTGCCGGTGTAGAATGCAAACAGCAACAAGCCCATGCTGGAAAccaagggg                                                                     >  2:1526490/1‑282 (MQ=255)
                                                                                                                                                                                                          gCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGAACACAAAGGATACACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCAGGTGTAGATAGCAATCAGCACGAAGCCACTGTGGGAAAccgaggtg                                                                     >  2:1172955/1‑282 (MQ=255)
                                                                                                                                                                                                                   aaTCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCATTCAGCACGAAGCCCATCTGGGAAACCGAGGTGGAGGCAAt                                                             >  2:1339791/1‑288 (MQ=255)
                                                                                                                                                                                                                   aaTCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATc                                                            >  2:648534/1‑289 (MQ=255)
                                                                                                                                                                                                                                     g‑aAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTc                                          <  1:779213/289‑1 (MQ=255)
                                                                                                                                                                                                                                     g‑aAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTc                                          <  1:214649/289‑1 (MQ=255)
                                                                                                                                                                                                                                      gacgTTACCGGTGCCAGGCATCCCAACCGTTGCCACCGCAAAGAACAACGACAGTGCTGGCAGCCATTTCATCTTGCTCCCAAGACCGCCCGTCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACAGAGGTGTAGGCGATCAGACGTTTGATATCGGTc                                          <  2:614867/286‑1 (MQ=255)
                                                                                                                                                                                                                                           tACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGGGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTggg                                      <  2:749092/288‑1 (MQ=255)
                                                                                                                                                                                                                                                  gCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGc                               <  1:1126786/288‑1 (MQ=255)
                                                                                                                                                                                                                                                  gCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGc                               <  1:1824937/288‑1 (MQ=255)
                                                                                                                                                                                                                                                   ccAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGa                                                                                                                                                                                             >  1:1070285/1‑129 (MQ=255)
                                                                                                                                                                                                                                                   ccAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGa                                                                                                                                                                                             <  2:1070285/129‑1 (MQ=255)
                                                                                                                                                                                                                                                         aTCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACg                       <  1:170976/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         aTCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACg                       <  1:1748837/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         aTCCCAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACg                       <  2:851197/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           cccAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGc                      >  1:448693/1‑288 (MQ=255)
                                                                                                                                                                                                                                                           cccAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGc                      >  2:827642/1‑288 (MQ=255)
                                                                                                                                                                                                                                                           cccAAGCGTTGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCAAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCa                     <  1:1405936/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                    tGCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTagaag            <  2:894736/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                     gCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTagaaga           >  1:1319462/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     gCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTagaaga           >  2:472960/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     gCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCGGGGCGAAGTCCCACCACGCACCGTagaaga           >  2:1617784/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     gCCACCGCAAAGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGGAGGCTAGCAGACGTTTGATATCGGTCTGGGCGACGGCCATCCCCGCCCCCTagaaga           >  2:1408727/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                              aaGAACAGCGACAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATaa  <  1:416094/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                      
GAAGCCCAGCAGTACCAGCAGCACCACCAGCAACAGGATCATAAACAGCTCACGCAGGCTCATCCCTGGCAGTTCCTGGCTGGCAATCTGGCTTTTCGCTTTACCGAAGTAAGCGCGATGTAACATCGCCAGGCTATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACC‑GGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACG‑AAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCACCGCAAAGAACAGGCTCAGTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCGCTCAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACGCTGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAA  >  CP042583/1962890‑1963446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A