Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP042583 1,783,956 34 bp→TCATG intergenic (–/–) – / – –/–

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP042583 1783956 1783989 34 282 [0] [0] 277 –/– –/–

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP042583 = 17839550 (0.000)277 (1.090)
+TCATG		 128/534 0.3 100% intergenic (–/–) –/– –/–
?CP042583 1783990 = 0 (0.000)intergenic (–/–) –/– –/–

GATK/CNVnator alignment

N/A