Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP042583 1,783,956 34 bp→TCATG intergenic (–/–) – / – –/–

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP042583 1783956 1783989 34 302 [1] [0] 301 –/– –/–

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP042583 = 17839551 (0.000)299 (0.920)
+TCATG		 127/492 0.8 99.8% intergenic (–/–) –/– –/–
?CP042583 1783990 = 0 (0.000)intergenic (–/–) –/– –/–

GATK/CNVnator alignment

N/A