Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,930,185 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,930,1850GC99.0% 470.3 / NA 204intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base C (106/96);  total (106/98)
Fisher's exact test for biased strand distribution p-value = 2.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,930,1860CG99.5% 474.3 / ‑5.9 204intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (106/97);  minor base A (0/1);  total (106/98)
Fisher's exact test for biased strand distribution p-value = 4.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01
*CP0425831,930,1870TA99.5% 480.8 / NA 204intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (105/98);  minor base C (1/0);  total (106/98)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 204 total aligned reads displayed.

GGCGCTACCGCCTGTAGCTGATGATAAAGATCCTGAATGGTGTTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTACTGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGGCTACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGACAGACCAATACCAATGCCCGC  >  CP042583/1929908‑1930466
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
    cTACCGCCTGTAGCTGATGATAAAGATCCTGAATGGTGTTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGcc                                                                                                                                                                                                                                                                            >  1:683998/1‑289 (MQ=255)
             gTAGCTGATGATAAAGATCCTGAATGGTGTTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGcc                                                                                                                                                                                                                                                                   <  1:167623/289‑1 (MQ=255)
                    atgatAAAGATCCTGAATGGTGTTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGGTCCTTAACCT‑ATTTAATGATGTGCAACTTCGGTCTGCGCACCAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGCACCGATGACCACACCCCCTGCCAGCCTc                                                                                                                                                                                                                                                             >  2:1723240/1‑288 (MQ=255)
                              tCCTGAATGGTGTTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGGCAGTAATCccg                                                                                                                                                                                                                                                   >  1:1318422/1‑288 (MQ=255)
                                   aaTGGTGTTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTGAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCTACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAACCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTATTCCCGCCGCa                                                                                                                                                                                                                                              >  2:1604470/1‑288 (MQ=255)
                                       gtgtTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAAACGATGACCGCCACCCCTCCAAGCGTCAGTAATCCCGCCGCATCGca                                                                                                                                                                                                                                         >  2:392426/1‑288 (MQ=255)
                                        tgtTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTTCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGGGAAAATAATCAGCGAACCGATAGCCGCCACCTGTGCCAGGGTCAGGAAACCcgctgctcccttg                                                                                                                                                                                                                                        >  2:101584/1‑282 (MQ=255)
                                        tgtTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCt                                                                                                                                                                                                                                         <  1:1777065/288‑1 (MQ=255)
                                            tGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCaa                                                                                                                                                                                                                                    >  1:655539/1‑289 (MQ=255)
                                             ggCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATTGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACAGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCACCCCTGGaaaa                                                                                                                                                                                                                                   >  2:694037/1‑289 (MQ=255)
                                              ccgcggtcaccccGTCAATCAGCAACCAGTCATAACCAGAAGTGGCTGCAATTCCTGCCATATAGGCAGTCGTTTAGCTTACCCACAGACCAATTTGCACTTCGCCCTTTCGTAAACTTTCTTTAAAGGGATTGCTTAATAATGCTTT‑CATCGTATTCCTTTACCT‑ATTTAATGATGTGCCCAGTCGGTCTGCGCAACAGTCCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCaaa                                                                                                                                                                                                                                   <  2:1091397/279‑1 (MQ=255)
                                                    gCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCCGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGtt                                                                                                                                                                                                                            >  1:738295/1‑289 (MQ=255)
                                                                    cAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCa                                                                                                                                                                                                            >  1:605335/1‑289 (MQ=255)
                                                                     aaCCAGTCGTAACCAGAAGTGGCGGCAATTTCTACCATATAGGCAGTCGTCGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGGGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACgcgc                                                                                                                                                                                                             <  2:1873115/287‑1 (MQ=255)
                                                                        cAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGAt                                                                                                                                                                                                        <  2:461833/289‑1 (MQ=255)
                                                                            gacagccAGAAATGGCGGCAATTTCTGCCAGTTAGGCAGTCGTTGAGCTTAACGACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTAAACCT‑ATTTAATGATGTGCCACGTCGGGCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCgg                                                                                                                                                                                                     <  2:1923764/283‑1 (MQ=255)
                                                                              tAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGc                                                                                                                                                                                                  >  1:1172623/1‑289 (MQ=255)
                                                                                cccAGAAGGGGCGGCAATTTCTGCAATATAGGCACTCGTTGAGCTTAACCACAGACCAATTTCCACTTCGCCCTTGCTTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAAGGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCaa                                                                                                                                                                                                <  2:683998/288‑1 (MQ=255)
                                                                                         ggcggcAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAAccc                                                                                                                                                                                         <  1:1383615/287‑1 (MQ=255)
                                                                                          gcggcAATTTCTGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGc                                                                                                                                                                                       >  1:319534/1‑288 (MQ=255)
                                                                                           cggcAATTTCGGCCATATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGcc                                                                                                                                                                                      <  1:1890647/288‑1 (MQ=255)
                                                                                            ggcAATTTCTGCCAGATAGGCAGTCGTTGAGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGACCCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGccc                                                                                                                                                                                     <  1:1763641/288‑1 (MQ=255)
                                                                                                      tgcttataGGCAGTCGTAGAGCTTAAACAAAGACCCATTGTCACTTTGCCCTTGCTTAAACGTTTTTTAAAGGGATTGCTTAATACTGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCaaa                                                                                                                                                                          <  2:1236529/285‑1 (MQ=255)
                                                                                                                 agtcgttgagCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATGATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGTTCTCCGCAACAGTCCGATTTACACGCAGAGTGAAAATAATCAGCGAACTGATGACCGCCACCGCTGCCAGCTTCAGTAATCCCGCCGCCCCCCTCGCAACTACCGTTTCCTCTCTCACGCGCTCGCTACGGGCCATAAACCCGCGCACTACACCAAACAGGCTTACaa                                                                                                                                                               >  2:1495243/10‑289 (MQ=255)
                                                                                                                   tcgttgagCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCAACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAgg                                                                                                                                                                                                          >  2:325511/8‑244 (MQ=255)
                                                                                                                             gaacacaaGACCACTGTTCACATCTCCCTTGCGTAAACGCTTGTTAAAGGGATGTCTTAATAAAGCGTT‑CATCGTATTCCTTAAACA‑GTGTAATGATGTGCCACGTCGGTCAGCGCAACAGTGCGATTTACAAGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCAACGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCGTGCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCg                                                                                                                                                   <  2:1257303/282‑1 (MQ=255)
                                                                                                                                 cacaGACCAATTTGCACTTCGCCCGTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGcagc                                                                                                                                               <  1:1522418/289‑1 (MQ=255)
                                                                                                                                   caGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCCCTGCACCAAACAGGGTTACAAAAACAATTCCCGcaccc                                                                                                                                              >  2:466997/1‑288 (MQ=255)
                                                                                                                                    aGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCAACGTCGGTCTTCGCAACAGTGCGATTTACACGCAGAGTGAAACTAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACAAATTCCCGcagcca                                                                                                                                             >  2:1372723/1‑288 (MQ=255)
                                                                                                                                     gACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCACCGCTGGCAAATAACGGTTCTGCCTTCACGCGCAGGACCGGGGCAATAACCCCGACCACTGCCCCAAACCAGCTAACAAAACCACTTccgccaaccat                                                                                                                                            >  2:1603072/1‑279 (MQ=255)
                                                                                                                                      aCCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGcagccagc                                                                                                                                           >  1:33639/1‑288 (MQ=255)
                                                                                                                                      aCCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAgcg                                                                                                                                          <  1:101584/289‑1 (MQ=255)
                                                                                                                                             tGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTAcc                                                                                                                                   >  1:881724/1‑289 (MQ=255)
                                                                                                                                                aCTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGa                                                                                                                                <  1:1366700/289‑1 (MQ=255)
                                                                                                                                                  ttCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGaaa                                                                                                                              >  2:1519997/1‑289 (MQ=255)
                                                                                                                                                    cGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGc                                                                                                                            >  2:770421/1‑289 (MQ=255)
                                                                                                                                                      ccatgcggtaacgtttCTTGAAACGGATT‑CATTATGATGTGTTCCATCTTGTTCC‑TAACCTAATTAAAGGAGTTGCAACGTCGGTCGCCGCAACCGTGCGATTTACCCGCAGAGTGAAAATAACCAGCAAACCGATGACCGCCACCGCGGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAg                                                                                                                          <  2:628621/275‑1 (MQ=255)
                                                                                                                                                         ttGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCTCTGGCAAATAACGTTTCTGCTTTCCCGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACCGGTTTACAAAACAACATCCCGCAGCCAGCCCCGTACCGGAAAGCAGTtg                                                                                                                       >  2:555874/1‑289 (MQ=255)
                                                                                                                                                                 ccGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAAGGATGGGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCa                                                                                                               <  2:930769/288‑1 (MQ=255)
                                                                                                                                                                 aggtttgttAAACGGATTGCGTAATCAGCGGTT‑CTTCGTGTTCCTTACCCT‑ATTTAATGATGTGCCCCGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCa                                                                                                               <  2:861695/282‑1 (MQ=255)
                                                                                                                                                                 aCGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGCTGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCa                                                                                                               <  1:1058156/289‑1 (MQ=255)
                                                                                                                                                                 aCGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCa                                                                                                               <  1:115044/289‑1 (MQ=255)
                                                                                                                                                                 aCGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCa                                                                                                               <  2:881724/289‑1 (MQ=255)
                                                                                                                                                                 aCGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCa                                                                                                               <  2:1172623/289‑1 (MQ=255)
                                                                                                                                                                     tCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAAccc                                                                                                                                                                                         <  2:1450911/211‑1 (MQ=255)
                                                                                                                                                                     tCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAAccc                                                                                                                                                                                         >  1:1450911/1‑211 (MQ=255)
                                                                                                                                                                               gATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCCGCGCCGTACCGGAAAGCAGTTGTGTCGCCACCGTCACGAac                                                                                                    >  2:1073347/1‑286 (MQ=255)
                                                                                                                                                                                 ttGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATGGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAAATCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTg                                                                                                >  1:829855/1‑288 (MQ=255)
                                                                                                                                                                                 ttGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCaa                                                                                                                                                                                                >  2:569650/1‑192 (MQ=255)
                                                                                                                                                                                 ttGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCaa                                                                                                                                                                                                <  1:569650/192‑1 (MQ=255)
                                                                                                                                                                                 ttGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGAACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTg                                                                                                >  1:1495662/1‑288 (MQ=255)
                                                                                                                                                                                            tGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCaa                                                                                    >  2:618407/1‑289 (MQ=255)
                                                                                                                                                                                             gggTT‑CATCGAGTTCCTTAACCT‑GTTCAATGATGGGCCAGGTCGGTCTGCGAAACAGGGCGAATTACACGCAGAGTAAAAATAATCACGGACCCGATGACCGCGACCGCTGGCAGCGTAGGTAATCCCGCGGCATCGCTGGCAAATAACGTTTCTGCTTGCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAAt                                                                                   <  2:1778705/287‑1 (MQ=255)
                                                                                                                                                                                              cGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATa                                                                                  >  2:1157250/1‑289 (MQ=255)
                                                                                                                                                                                              cGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATa                                                                                  >  1:1294173/1‑289 (MQ=255)
                                                                                                                                                                                              cGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATa                                                                                  >  1:1089391/1‑289 (MQ=255)
                                                                                                                                                                                              cGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGCAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCCTCCCGGCacaa                                                                                  >  2:1663288/1‑286 (MQ=255)
                                                                                                                                                                                              cGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCCCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTTTCGGCATCGTCCAGACCCCTGGCTGCACGGCAATa                                                                                  >  2:808459/1‑289 (MQ=255)
                                                                                                                                                                                                       gtgtTCCTTAACAT‑ATTTAAGTATGTGCCACGTCGGTCTGAGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGAt                                                                          <  2:1318422/289‑1 (MQ=255)
                                                                                                                                                                                                         gtTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCaaa                                                                                                                                                                          <  2:975138/191‑1 (MQ=255)
                                                                                                                                                                                                         gtTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAg                                                                        <  1:618407/289‑1 (MQ=255)
                                                                                                                                                                                                         gtTCCTTAACCT‑ATTTAATGATGTGCCACGT‑GGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAg                                                                        <  1:907643/288‑1 (MQ=255)
                                                                                                                                                                                                         gtTCCTTAACCT‑ATTTAAGGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAg                                                                        <  1:1723240/289‑1 (MQ=255)
                                                                                                                                                                                                           tCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGc                                                                       >  2:270233/1‑288 (MQ=255)
                                                                                                                                                                                                              ttAACCT‑ATTTGATGATTTGCCACGTCTGTCTGCGCAACAGTGAGATTTACCCGCAGAGTGAAAATAATCCGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCa                                                                   <  1:466997/289‑1 (MQ=255)
                                                                                                                                                                                                                aaCCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAac                                                                 >  1:941052/1‑289 (MQ=255)
                                                                                                                                                                                                                 aacT‑AGTTAAGGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCAACCGCTGCCAGCGTCAGTAATCCCGCCGCAGCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAaca                                                                <  1:625099/287‑1 (MQ=255)
                                                                                                                                                                                                                 aCCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCCGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAaca                                                                <  1:1607345/289‑1 (MQ=255)
                                                                                                                                                                                                                   cT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAacaca                                                              <  1:808459/289‑1 (MQ=255)
                                                                                                                                                                                                                   cT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAacaca                                                              <  1:429049/289‑1 (MQ=255)
                                                                                                                                                                                                                   cT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAacaca                                                              <  1:322524/289‑1 (MQ=255)
                                                                                                                                                                                                                   cT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGAGATTTACACGCAGAGTGAAAACAATCAGCGACCCGATGACCGCCACCTCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGAAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAacaca                                                              <  1:557519/289‑1 (MQ=255)
                                                                                                                                                                                                                       tttAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAAcacaca                                                            >  2:489201/1‑288 (MQ=255)
                                                                                                                                                                                                                       tttAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCACCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAAcacaca                                                            >  1:498753/1‑288 (MQ=255)
                                                                                                                                                                                                                        ttAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCgg                                                                                                                                                                                                     >  2:1143781/1‑150 (MQ=255)
                                                                                                                                                                                                                                                cgcAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGc                                                                                                                                                                                                                                                                <  1:203822/67‑1 (MQ=255)
                                                                                                                                                                                                                                                cgcAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGc                                                                                                                                                                                                                                                                >  2:203822/1‑67 (MQ=255)
                                                                                                                                                                                                                                                cgcAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAg                                                           >  1:991621/1‑264 (MQ=255)
                                                                                                                                                                                                                                                 gcAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGaaa                                 <  1:1528494/289‑1 (MQ=255)
                                                                                                                                                                                                                                                  aaccAGTGAGATTTACCCGCAGGGTGAAAATCACCAGCGACCCGATCACCGCCCCCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGAAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGaaa                                 <  2:1031039/285‑1 (MQ=255)
                                                                                                                                                                                                                                                      aGTGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCa                                                                                                                                                                                    >  2:163038/1‑137 (MQ=255)
                                                                                                                                                                                                                                                        tGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGTCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGaaa                                 >  2:211552/1‑282 (MQ=255)
                                                                                                                                                                                                                                                        tGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGaaa                                 <  1:211552/282‑1 (MQ=255)
                                                                                                                                                                                                                                                        tGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGccc                          >  1:1031039/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        tGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGccc                          >  1:1783447/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        tGCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGcc                           >  2:91084/1‑288 (MQ=255)
                                                                                                                                                                                                                                                         gCGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGCCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAagcagc                            <  1:694037/286‑1 (MQ=255)
                                                                                                                                                                                                                                                          cGATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCa                                                                                                               <  1:1240942/202‑1 (MQ=255)
                                                                                                                                                                                                                                                           gATTTACACGCAGAGTGAAAATAATCAGCGACCCGATGCCCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGa                       <  1:39489/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           gATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGa                       <  1:270233/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           gATTTACACGCAGAGTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGa                       <  1:1603710/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           gATTTACACGCAGAGTGAAAAGAATCAGGGACCCGAGGACCGCCACCGCGGCCAGCGTCAGTAATACCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGa                       <  2:1410114/289‑1 (MQ=255)
                                                                                                                                                                                                                                                            atttcaacgcgaagTGAAAATAATCACCGAACCGATGACCCCCACCGCGGCCGGCGGCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGAc                      <  2:655539/277‑1 (MQ=255)
                                                                                                                                                                                                                                                                 caagagaagTGAAAATAATCAGCGAACCGATGCCCGCCACCGCTGCCGGCGTAAGTAACCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGACAGacc                 <  2:605335/282‑1 (MQ=255)
                                                                                                                                                                                                                                                                       gagTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGAt                                                                                                                                                                                                        >  1:167905/1‑100 (MQ=255)
                                                                                                                                                                                                                                                                       gagTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGAt                                                                                                                                                                                                        <  2:167905/100‑1 (MQ=255)
                                                                                                                                                                                                                                                                        agTGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACACCGCTACGATCGCCATTACCGGAGAAAGCAGCCCGGACAGcccaatacca          >  2:342486/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          tGAAAATAATCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGACAGaccaataccaat        >  2:1432187/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                taatCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGACAGACCAATACCAATGCccgc  <  1:1630446/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                taatCAGCGAACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGACAGACCAATACCAATGCccgc  <  1:837265/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
GGCGCTACCGCCTGTAGCTGATGATAAAGATCCTGAATGGTGTTTGGCGCGTGCTCCCCGTCAATCAGCAACCAGTCATAACCAGAAGTGGCGGCAATTTCTGCCATATAGGCAGTCGTACTGCTTAACCACAGACCAATTTGCACTTCGCCCTTGCGTAAACGTTCTTTAAAGGGATTGCTTAATAATGCGTT‑CATCGTGTTCCTTAACCT‑ATTTAATGATGTGCCACGTCGGTCTGCGCAACAGTGCGATTTACACGCAGAGTGAAAATAATCAGGCTACCGATGACCGCCACCGCTGCCAGCGTCAGTAATCCCGCCGCATCGCTGGCAAATAACGTTTCTGCTTTCACGCGCAGGATCGGGGCAATAAACCCGCCCACTGCACCAAACAGGTTTACAAAACCAATTCCCGCAGCCAGCGCCGTACCGGAAAGCAGTTGTGTCGGCATCGTCCAGAACACTGGCTGCACGGCAATAAACCCGATAGCTGCAACACACAGCGCTACGATCGCCATTACTGGAGAAAGCAGCCCGGACAGACCAATACCAATGCCCGC  >  CP042583/1929908‑1930466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A