Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 559,672 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583559,6720AT99.3% 639.2 / NA 273intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base T (148/122);  minor base G (0/2);  total (149/124)
Fisher's exact test for biased strand distribution p-value = 2.07e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583559,6730CG99.6% 635.3 / NA 273intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (149/122);  minor base A (0/1);  total (149/124)
Fisher's exact test for biased strand distribution p-value = 4.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583559,6740TA98.9% 639.7 / NA 273intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (149/121);  minor base G (0/3);  total (149/124)
Fisher's exact test for biased strand distribution p-value = 9.25e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 273 total aligned reads displayed.

CGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAAGC‑TCTCCCAGG‑CATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCCCCAGGCAGAGCATGGAACT  >  CP042583/559393‑559950
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                    
   gccaaaaGCTGGAACAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAg                                                                                                                                                                                                                                                                             <  2:1076402/284‑1 (MQ=255)
                   aCGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTgcg                                                                                                                                                                                                                                                            <  2:2170631/289‑1 (MQ=255)
                   aCGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGCAATCGAGCAATTTACCCGCCTgc                                                                                                                                                                                                                                                             >  1:1404544/1‑288 (MQ=255)
                      cATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGAGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                                         <  1:2904398/289‑1 (MQ=255)
                        tCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccgc                                                                                                                                                                                                                                                        >  1:2083663/1‑288 (MQ=255)
                        tCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCgccgcc                                                                                                                                                                                                                                                       >  1:521900/1‑289 (MQ=255)
                              ccAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATc                                                                                                                                                                                                                                                  >  1:199710/1‑288 (MQ=255)
                                cgCATCGTCCCCAACAAAAACACAGTCCCACCCGCCGGGACGGGGATTTTCAGGGTGACCACCAGCCGCGCGAGCAGATAGGGCAGGGAAGGGACAAGGGAACGCCAGTCAAACTCGTACATTATTGGCCCCCCATGTTGCCAGGAAGGCGAACTTTACGTTCAACAAGCGTCATCACCAGCATGAAAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATccac                                                                                                                                                                                                                                               <  2:577504/288‑1 (MQ=255)
                                   aTCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacc                                                                                                                                                                                                                                              <  1:2475161/287‑1 (MQ=255)
                                         ccccACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGAt                                                                                                                                                                                                                                      >  2:258040/1‑289 (MQ=255)
                                                    aCCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGtcgaggcga                                                                                                                                                                                                                           >  1:1693049/1‑281 (MQ=255)
                                                      cAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATg                                                                                                                                                                                                                         >  2:1371029/1‑289 (MQ=255)
                                                        aTCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacc                                                                                                                                                                                                                                              <  1:838180/266‑1 (MQ=255)
                                                               ccgccgTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttt                                                                                                                                                                                                                >  2:1137198/1‑289 (MQ=255)
                                                                cggcgTGACGGGGATTTTCAGGGTGAGCAACAGCACGACGAGAAGATATGGCAGGGAAGGGAAAATGGAACTCAAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGtttt                                                                                                                                                                                                               <  2:1818459/286‑1 (MQ=255)
                                                                  ccgTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATAAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CAGGGGCTGAGTAATCGGGCAATTTACCCCCCTGCGCCCCCAAACCCACCAGACCGATAGCCGAGGCGATGGCGGGGtttct                                                                                                                                                                                                              >  1:3152774/1‑286 (MQ=255)
                                                                              tttaCAGGTTGATCACCGGCCGTTGGGGCAGATAGGGCGGGGAAGGGACAAGGGAACCCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc                                                                                                                                                                                                 <  2:1870642/289‑1 (MQ=255)
                                                                               tttCGGGGTGCTCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTCCATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                                                  <  1:2283229/287‑1 (MQ=255)
                                                                                 tCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATCGTCCAGGCGATGGCGGCGTTTTTCCCCCGGTTactcat                                                                                                                                                                                               >  2:2227685/1‑288 (MQ=255)
                                                                                         aTCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCAtctctgagg                                                                                                                                                                                       >  1:1586206/1‑283 (MQ=255)
                                                                                         aTCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGAAATTTAACCGCCTGCGCCGCCATAACCACCAGACCGATAGTCGAGGCGATGGAGGGGGTTCTCACCATGGTCAACAtatctgcgtg                                                                                                                                                                                      >  2:2283229/1‑283 (MQ=255)
                                                                                           cACCAGCCCGGCGAGCAGATAGGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGGACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCGGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCTAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacca                                                                                                                                                                                                                                             <  2:1894665/232‑1 (MQ=255)
                                                                                                 cccGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCg                                                                                                                                                                                                                                                                  <  1:479498/205‑1 (MQ=255)
                                                                                                 cccGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcg                                                                                                                                                                              >  2:1792261/1‑289 (MQ=255)
                                                                                                 cccGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcg                                                                                                                                                                              >  1:278200/1‑289 (MQ=255)
                                                                                                   cGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCggg                                                                                                                                                                            >  1:1217904/1‑289 (MQ=255)
                                                                                                     tCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGAc                                                                                                                                                                          >  1:2563116/1‑289 (MQ=255)
                                                                                                         gaaaagagggCAGGAAAGGGACAATGGACCCCCATGCAAACTCGTAATATATTTCCCCCCCAGGTCGCAGGGCGGGCGAAATTTACTTTAAACCAGCGTCATCACCAGAATGATAAAAGCGTTAATCAAAACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGAt                                                                                                                                                                       <  2:2855708/280‑1 (MQ=255)
                                                                                                          cAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATa                                                                                                                                                                      <  1:1792261/288‑1 (MQ=255)
                                                                                                          agtaatttgaaggaaaggaaAAATGGAATGCCAGTCAAACCCTACCATTATTTGCCCCCCATTTTGCCAGGCAGCGGAACTTTACTTTCAACCAGCGTCATCCCCAGCAGGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATa                                                                                                                                                                      <  2:3067297/278‑1 (MQ=255)
                                                                                                              tatGGCAGGGAAGGGACAATGGAACTCCACTCAAACTCGTACATTCTTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGAATGATAAAAGCGTTAATCAACACATACGACAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CAGGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcg                                                                                                                                                                   <  2:659026/287‑1 (MQ=255)
                                                                                                              gatGGAAGGCAAGGGAAAAGGGAACCCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCGGCGCCCTAACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgcg                                                                                                                                                                 <  2:1210821/288‑1 (MQ=255)
                                                                                                                tGGCAGGAAAGGGACAATGGAAGTCCAGTCAAACTCGTACATTAGTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGGGGCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAACCG‑ACCCCCAGG‑CATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                                               <  2:521900/289‑1 (MQ=255)
                                                                                                                 ggCAGGGATGTAGCAAAGGAACTCCAGTCAAACTCTTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGCACTTTACGTTCAACACGCTTCATCACCAGCATGATAAAAGCGTTAATAAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGAAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                                               <  2:1285866/288‑1 (MQ=255)
                                                                                                                   cAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                                         <  2:2068371/196‑1 (MQ=255)
                                                                                                                        aagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCg                                                                                                                                                                                                                      <  2:110401/226‑1 (MQ=255)
                                                                                                                        aagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCg                                                                                                                                                                                                                      >  1:110401/1‑226 (MQ=255)
                                                                                                                         agggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTa                                                                                                                                                       <  1:1366113/288‑1 (MQ=255)
                                                                                                                              cAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcag                                                                                                                                                  <  1:306320/288‑1 (MQ=255)
                                                                                                                                aTGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCACTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGcagcag                                                                                                                                               >  1:1604398/1‑289 (MQ=255)
                                                                                                                                 tGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGCCCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGCTCATCATCTCTGAGGTCATCGGCGGGACGATAACCCGATAAGCATTAAGCAGCAGt                                                                                                                                              >  1:3011218/1‑289 (MQ=255)
                                                                                                                                     aCTCCAGACAAACTCGTACATTTTTTGCCCCCCATGTTGCCAGGCAGGGGAACTTTAAGTTCAACCAGCGTCATCACCAGGATAAAAAAAGCGTTATACAAGACATACGCCGACGTAAGGGCGGTAACCG‑ACTCCCGGG‑AATGGGCTGAGTAATCGAGTAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGt                                                                                                                                          <  2:1586206/289‑1 (MQ=255)
                                                                                                                                      cTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTa                                                                                                                                         >  1:1909199/1‑289 (MQ=255)
                                                                                                                                           gTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTTCCCGCCTgc                                                                                                                                                                                                                                                             <  1:892451/168‑1 (MQ=255)
                                                                                                                                             aaaaCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGAAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                                    <  1:3107431/286‑1 (MQ=255)
                                                                                                                                              aaaCTCGTACATTATTTGCCCCCCATGTTGCAAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGAAGGCGGAGGTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGGTAACGCGATAAGGATTAGGCAGCAGTAAGTATCGATaa                                                                                                                                  >  1:2580458/1‑288 (MQ=255)
                                                                                                                                                 cTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAATAGGCAGCAGTACCTACCGATAAg                                                                                                                                 >  1:1133793/1‑286 (MQ=255)
                                                                                                                                                     tACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCgg                                                                                                                          >  1:2491326/1‑289 (MQ=255)
                                                                                                                                                      atattattGGCCCCCCACGTGGCAGGGCAGGCGAACTTTACGTTAAACCAGGGTCATAACCAGCAGAAAAAACGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑CCTCCCAGG‑CATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGt                                                                                                                         <  2:305896/287‑1 (MQ=255)
                                                                                                                                                            tttGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                                         >  2:471249/1‑155 (MQ=255)
                                                                                                                                                              tGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATGAGCATTAGGCAGCAGTACGTATCGATAATCCTGCGGTAGCGCCAg                                                                                                                 >  1:1074300/1‑289 (MQ=255)
                                                                                                                                                               gCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGACAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAgg                                                                                                                >  2:890816/1‑289 (MQ=255)
                                                                                                                                                                      aTGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCTAGCAATTTACCCGCCTGCGCCGCCATAGCCACCATCACGATAGTCCAGGCGATGGCGGAGGTTTTCACCAGGTTCCGCATCTCTGAGGTCATCGGCGGGACGATCAAGCGACAAACAATAGGCATCAGACCGCATCGCTAAGCCTGCGGTAACgcaacgcccctc                                                                                                          >  2:2585153/1‑277 (MQ=255)
                                                                                                                                                                               ggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATc                                                                                                                                       >  1:2278358/1‑250 (MQ=255)
                                                                                                                                                                               ggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGcgcg                                                                                                 >  1:1645203/1‑288 (MQ=255)
                                                                                                                                                                                 caggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGCGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCCATAAGCATTAGGCCACAGTACGTAATGGTAAGc                                                                                                                                >  2:299010/1‑255 (MQ=255)
                                                                                                                                                                                  aggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACGCCCAGG‑AATGGGCTGAGGAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCa                                                                                              <  1:2845364/288‑1 (MQ=255)
                                                                                                                                                                                   ggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCg                                                                                                                                                                                                                      <  2:1736432/167‑1 (MQ=255)
                                                                                                                                                                                    gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCAttt                                                                                           >  1:1516676/1‑289 (MQ=255)
                                                                                                                                                                                     cGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                                     <  2:330497/134‑1 (MQ=255)
                                                                                                                                                                                     cGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc                                                                                                                                                                                                          >  2:2694605/1‑177 (MQ=255)
                                                                                                                                                                                     cGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc                                                                                                                                                                                                          <  1:2694605/177‑1 (MQ=255)
                                                                                                                                                                                     cGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatca                                                                                                                                                                                                >  1:986060/1‑187 (MQ=255)
                                                                                                                                                                                     cGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCAtttt                                                                                          >  1:1453834/1‑289 (MQ=255)
                                                                                                                                                                                      gAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                                         >  1:2069957/1‑129 (MQ=255)
                                                                                                                                                                                            tACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTAACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCg                                                                                                                           >  1:1859107/1‑249 (MQ=255)
                                                                                                                                                                                              cGTTCAACACGCGTCATCACCATACTGATAAAAGCGTTAATCAACACATACGCCGACGTAATGGCGGTAAACG‑ACTCCAAGG‑AATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTc                                                                                 <  1:640128/289‑1 (MQ=255)
                                                                                                                                                                                                    aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                                               >  1:2426349/1‑205 (MQ=255)
                                                                                                                                                                                                    aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                                               <  2:2426349/205‑1 (MQ=255)
                                                                                                                                                                                                    aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCa                                                                                                                  >  2:733388/1‑250 (MQ=255)
                                                                                                                                                                                                    aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCa                                                                                                                  <  1:733388/250‑1 (MQ=255)
                                                                                                                                                                                                               caCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacca                                                                                                                                                                                                                                             <  1:1308548/116‑1 (MQ=255)
                                                                                                                                                                                                                aCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATcg                                                               <  2:2083663/289‑1 (MQ=255)
                                                                                                                                                                                                                aCCAGCATAATAAAACCGTTAATCAACCCATACGCCAGCGTAAGGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATcg                                                               <  1:1027729/289‑1 (MQ=255)
                                                                                                                                                                                                                         aTAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGt                                                       >  1:1732581/1‑288 (MQ=255)
                                                                                                                                                                                                                           aaaaGAGTTAAGCAAAACACAGGCAGGCGTAGTGGCGTAAAACG‑CCGCCCAGG‑CAGGGGCTGAGTAACCGAGAAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTAcc                                                    <  2:1693049/289‑1 (MQ=255)
                                                                                                                                                                                                                            aaaGCGTTAGTCAAAACAACCGCCAGCGTAATGGCGGTAAACG‑CCCCCCGGG‑CAGGGGCTGAGAAATCCGGCAATTTCCCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCt                                                   <  2:1453834/289‑1 (MQ=255)
                                                                                                                                                                                                                               gCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                                                  >  1:2027636/1‑143 (MQ=255)
                                                                                                                                                                                                                               gCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGt                                                 >  1:1055109/1‑288 (MQ=255)
                                                                                                                                                                                                                                cGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATaa                                                                                                                                                                     <  2:1345113/171‑1 (MQ=255)
                                                                                                                                                                                                                                  ttAATCAACACTTACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGc                                             >  1:1346406/1‑289 (MQ=255)
                                                                                                                                                                                                                                  ttAATCAACACATACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                                               >  1:360721/1‑175 (MQ=255)
                                                                                                                                                                                                                                          cacaTACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCCTTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAacaccg                                     >  1:1891546/1‑287 (MQ=255)
                                                                                                                                                                                                                                           acaTACGCCGGGGCAATGGC‑GTAAACCGCCCCCCAGG‑AATGGGCTGAGTAATCGAGCAATTTACCCGCCTGGGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACggg                                    <  2:1049235/289‑1 (MQ=255)
                                                                                                                                                                                                                                             aTACGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATAGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGGTCGCAAACACCggcg                                  >  1:294870/1‑289 (MQ=255)
                                                                                                                                                                                                                                               cggccgcggTAATGGCGGTAAA‑C‑GACCCCAGGCCAGGGGCTGGGTAGTCGGCAAATTTGCCCGCCGGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACggg                                    <  2:3128146/277‑1 (MQ=255)
                                                                                                                                                                                                                                               aCGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGTGTTTTTCCCCAGGTGCATCATCTCTGAGGTCACCGGCGGGCCGATAACGCGCTCAGCATTAGGCAGCAGGACGTATAGACAAGCCCGCCGTAGCATCAGGCCCATCCCCAGCGCGGCCCTTTTTTGCCCTCGCGTCAGCCAATGACTCGCGGCGCGGACCTGCACTCAAACACgggggca                                >  2:2010166/1‑285 (MQ=255)
                                                                                                                                                                                                                                                cGCCAGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGgcggcg                               >  1:1839574/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    aGCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCCGCAGTACGTATCGATAAGACTGCGGTAGCGTCAAGCCCATCGCCAGCGCGGCATTTTTTTGCCCCCTCGGCATCGCCTCAACCCCGGCGCCTACCTTTTCGCCAACCCCCGCCGCGGtca                           >  2:2620007/1‑287 (MQ=255)
                                                                                                                                                                                                                                                     gCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                                               <  1:2632319/156‑1 (MQ=255)
                                                                                                                                                                                                                                                     gCGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCCAACCAGGGCGGCGGTaa                           >  1:2104910/1‑288 (MQ=255)
                                                                                                                                                                                                                                                      cGTAATGGCGTTAAACG‑ACCCCCGGG‑CAGGGGCGTGGTAATCGAGAAATTTACCCGCCTGGGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaaa                          <  2:2491326/288‑1 (MQ=255)
                                                                                                                                                                                                                                                      cGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCTATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCCTTTTTTTGCCCCCGCGGCCGCGACTGAATTGCGGCGCGTTCCTGCTTGCCAACACGGGcggggggacac                         >  2:194471/1‑284 (MQ=255)
                                                                                                                                                                                                                                                      cGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                                    <  2:39103/182‑1 (MQ=255)
                                                                                                                                                                                                                                                      cGTAATGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                                    >  1:39103/1‑182 (MQ=255)
                                                                                                                                                                                                                                                           tGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGcc                     >  1:2054298/1‑288 (MQ=255)
                                                                                                                                                                                                                                                           tGGCGGTAAACG‑ACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCCCGGCCGCGACTGAAACGCGGCCCGTACCTGTTCCCAAACAAGGGCCGCGGTAAACAGcc                     >  2:2833847/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                              aGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                                    >  1:221580/1‑159 (MQ=255)
                                                                                                                                                                                                                                                                              aGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCCCCAGGCAGAGCATGGatga  >  1:757444/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                              aGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAAAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCATCGACTGAAACGCGGCGCGTACCTGTTCGCAAACACGGGAGGCGGGAAACAGCCCCAGGCAGAGCATGGatgc  >  2:928359/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                    
CGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAAGC‑TCTCCCAGG‑CATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCCCCAGGCAGAGCATGGAACT  >  CP042583/559393‑559950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A