Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,812,247 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,812,2470GC99.2% 854.1 / NA 367intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/3);  new base C (181/180);  total (182/185)
Fisher's exact test for biased strand distribution p-value = 2.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,812,2480CG99.2% 854.1 / NA 367intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base G (180/183);  total (182/185)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,812,2490TA99.2% 872.4 / ‑5.3 367intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (182/182);  minor base G (0/3);  total (182/185)
Fisher's exact test for biased strand distribution p-value = 2.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 367 total aligned reads displayed.

TAGAACACGCCAGACAACGCGTAGATCATCAGCAGGTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGGCTCGCCCCGACAAAGTCGTAATA‑GAGGCTGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAG  >  CP042583/1811972‑1812528
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                        
    acacGCCAGACAACGCGTAGATCATCAGCAGGTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAg                                                                                                                                                                                                                                                                            <  1:85115/287‑1 (MQ=255)
             aCAACGCGTAGATCATCAGCAGGTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGatca                                                                                                                                                                                                                                                                  >  1:2424215/1‑288 (MQ=255)
               aaCGCGTAGATCATCAGCAGGTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGatcatc                                                                                                                                                                                                                                                                >  2:2513265/1‑288 (MQ=255)
                 cgcgTAGATCATCAGCAGGTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACga                                                                                                                                                                                                                                                                        <  2:2003217/278‑1 (MQ=255)
                         tcatcaGCAGGTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCg                                                                                                                                                                                                                                                      <  1:2862698/288‑1 (MQ=255)
                         tcatacgcagGTTCAGGCCGACGTTGACACCAGTTACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACGCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCg                                                                                                                                                                                                                                                      <  2:118301/282‑1 (MQ=255)
                           atcaGCAGGTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGcc                                                                                                                                                                                                                                                                                >  1:2567113/1‑260 (MQ=255)
                           atcaGCAGGTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTgg                                                                                                                                                                                                                                                   >  1:1703926/1‑289 (MQ=255)
                           atcaGCAGGTTCAGGCCGACGTGGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGcc                                                                                                                                                                                                                                                                                <  2:2567113/260‑1 (MQ=255)
                                   gTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGcc                                                                                                                                                                                                                                                           >  2:3045037/1‑273 (MQ=255)
                                   gTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAAc                                                                                                                                                                                                                                           >  1:961591/1‑289 (MQ=255)
                                    ttCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACgat                                                                                                                                                                                                                                                                       <  1:1226365/260‑1 (MQ=255)
                                    ttCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGaa                                                                                                                                                                                                                                            <  1:660817/287‑1 (MQ=255)
                                    ttCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGaa                                                                                                                                                                                                                                            <  1:1738403/287‑1 (MQ=255)
                                     tCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACgg                                                                                                                                                                                                                                         >  1:1488308/1‑289 (MQ=255)
                                           cGACGTTCACACAAGATCCTTGTGCCGCGTCCGGGTTACCGCCAATGACAAAAATGTGCTTACCGCAGCGGGTTTTGTTCCACAACACCAAGACGAACGCCACCGCCATCAACGCGTAGAAGGTGGTGTAAGAGTGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCAc                                                                                                                                                                                                                                   <  2:2750633/289‑1 (MQ=255)
                                              cGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGtt                                                                                                                                                                                                                                >  1:1028617/1‑289 (MQ=255)
                                              cGTTGACACCAGATACTTTTGCCACTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCTACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGATGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGtt                                                                                                                                                                                                                                >  1:457931/1‑289 (MQ=255)
                                              cGTTGACACCAGATACTGTTGCCGCTTCCGGGTTACCGCCAATGGGAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGtt                                                                                                                                                                                                                                <  1:53122/289‑1 (MQ=255)
                                                   accccagtaccTTTTGCAGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCAAAGAGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGAt                                                                                                                                                                                                                           <  2:1955812/279‑1 (MQ=255)
                                                    cacCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGAt                                                                                                                                                                                                                           <  1:2152196/288‑1 (MQ=255)
                                                               tttGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCa                                                                                                                                                                                                               <  1:2513265/289‑1 (MQ=255)
                                                                 tGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCACCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑t                                                                                                                                                                                                                                                                                   <  2:19263/219‑1 (MQ=255)
                                                                          cGGCTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGTTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATc                                                                                                                                                                                                    <  1:2692173/289‑1 (MQ=255)
                                                                               aactgCCAAAGGCAAAAATGTCTTTACCGAGGCGGGTTTTGTTCCACAACAACCAGACGAACGCCACCGAAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAAcc                                                                                                                                                                                               <  2:677397/285‑1 (MQ=255)
                                                                                aCCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCg                                                                                                                                                                                              <  1:795553/289‑1 (MQ=255)
                                                                                 ccGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGcc                                                                                                                                                                                                                                                           >  2:2244961/1‑227 (MQ=255)
                                                                                       aTGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGCTCAAACCGATcccc                                                                                                                                                                                        >  1:3172107/1‑288 (MQ=255)
                                                                                            aaaaaTGTTCTTACCGAGGGTGGTTTTGTCCAACACCACCCAAACGAACGCCACCGCAATCAGAGCGTAGAAGGTTATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCa                                                                                                                                                                                  <  2:1025172/289‑1 (MQ=255)
                                                                                                agttacTTACCGACGGGGGGTTGTTTCCACAACCCCAATACGAAGCCCACCGCAATCACCCCGTAGAAGGTGATTTAATAGTGCCGGACACTCCCAGGCGCGAAAAAGACCTGAGAAAAGGTAGGTAAGACACTGTCAAATCCAGAAAGGGGCGACGCACCGACAAAGTCGTAATA‑GAGCGAGTTGA‑GGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATCAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATgg                                                                                                                                                                              <  2:298511/284‑1 (MQ=255)
                                                                                                    tCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGcaca                                                                                                                                                                          <  1:194554/289‑1 (MQ=255)
                                                                                                    tCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATAACCGCACCACTGGcaca                                                                                                                                                                          >  1:1805044/1‑289 (MQ=255)
                                                                                                        aCCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCCTCACGTTGAGATAAGCGATAATCAGACCGTTTATCAAACAGATCACCGCACCAATGGCACAGACa                                                                                                                                                                      >  2:123586/1‑289 (MQ=255)
                                                                                                           gAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGAt                                                                                                                                                                                                                    <  1:1824374/240‑1 (MQ=255)
                                                                                                                  gTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATa                                                                                                                                                             >  1:1100768/1‑288 (MQ=255)
                                                                                                                       gTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAgc                                                                                                                                                       <  1:1379481/289‑1 (MQ=255)
                                                                                                                          tgctaacaCCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCa                                                                                                                                                    >  2:55216/5‑289 (MQ=255)
                                                                                                                           cacaACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCaa                                                                                                                                                   >  1:1392738/1‑289 (MQ=255)
                                                                                                                             caacaCCCAGTCGAACGCCACGGCAATCAACGAGTAGAAGGTGGTGCAAGGACGACGGAAACACCCCAGGGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAGGTGGGGAAGCCCCGACAAAGTCGGAATG‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCg                                                                                                                                                                                                          <  2:1121998/232‑1 (MQ=255)
                                                                                                                                  cccAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGACCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCACACGGCa                                                                                                                                             >  2:148522/1‑288 (MQ=255)
                                                                                                                                          aacgcaccccaaaTAAAGGCGTAGAAGGTGAGGTAAGAGAGACGAACACGCGCACGCGCGCAAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGTTCAGCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGc                                                                                                                                      <  2:3172107/276‑1 (MQ=255)
                                                                                                                                          aaCGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCg                                                                                                                                                                                                                                       <  2:1494812/190‑1 (MQ=255)
                                                                                                                                          aaCGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCa                                                                                                                                    >  1:2877253/1‑289 (MQ=255)
                                                                                                                                                 ccGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCgg                                                                                                                             >  2:1598645/1‑289 (MQ=255)
                                                                                                                                                     aaTCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGaa                                                                                                                          <  1:3055695/288‑1 (MQ=255)
                                                                                                                                                      aTCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAaca                                                                                                                        <  1:2242110/289‑1 (MQ=255)
                                                                                                                                                       tCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAAGCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAac                                                                                                                         >  1:2953315/1‑287 (MQ=255)
                                                                                                                                                           cgcgTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACaa                                                                                                                                                                     <  1:2353226/239‑1 (MQ=255)
                                                                                                                                                           cgcgTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACaa                                                                                                                                                                     >  2:2353226/1‑239 (MQ=255)
                                                                                                                                                             cgTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTttgt                                                                                                                  <  1:1408595/288‑1 (MQ=255)
                                                                                                                                                                aGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGAAGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGc                                                                                                              <  1:1859838/289‑1 (MQ=255)
                                                                                                                                                                     gTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTa                                                                                                          >  1:1068642/1‑288 (MQ=255)
                                                                                                                                                                      tGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGa                                                                                                                                                                <  2:434439/233‑1 (MQ=255)
                                                                                                                                                                      tGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTAt                                                                                                         <  1:2722163/288‑1 (MQ=255)
                                                                                                                                                                        aTGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACaa                                                                                                                                                                     <  2:2888816/226‑1 (MQ=255)
                                                                                                                                                                        aTGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCa                                                                                                      >  1:2316543/1‑289 (MQ=255)
                                                                                                                                                                        aTGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCA‑CAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCAt                                                                                                     >  2:861696/1‑289 (MQ=255)
                                                                                                                                                                         tGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCa                                                                                                      <  1:1598645/288‑1 (MQ=255)
                                                                                                                                                                          gTAAGAGGGACGGAAACTCCCCACCGCGACAAAGCCAGGAGCAAAGGTAGGGAAGCCACTGTCAAAACCAGAAATTGGGGAGGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATg                                                                                                    <  2:1548262/289‑1 (MQ=255)
                                                                                                                                                                          gTAAGAGAGACGGAAACTCCCCAGCGCGACAAGGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATg                                                                                                    <  1:40536/289‑1 (MQ=255)
                                                                                                                                                                          gTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTttg                                                                                                                   <  2:1453281/274‑1 (MQ=255)
                                                                                                                                                                            aaGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATgg                                                                                                   >  2:929818/1‑288 (MQ=255)
                                                                                                                                                                            aaGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGa                                                                                                  <  2:636460/289‑1 (MQ=255)
                                                                                                                                                                            aaGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAACAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCaa                                                                                                                                                                                 <  2:408954/210‑1 (MQ=255)
                                                                                                                                                                             agagagACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGAc                                                                                                 <  2:1100768/289‑1 (MQ=255)
                                                                                                                                                                             agagagACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGAc                                                                                                 <  1:2992866/289‑1 (MQ=255)
                                                                                                                                                                                  gaCGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCg                                                                                                                                                                                                                                       <  1:1532061/150‑1 (MQ=255)
                                                                                                                                                                                   aCGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGa                                                                                                                                                                                                             >  1:2027737/1‑175 (MQ=255)
                                                                                                                                                                                   aCGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGc                                                                                                              >  1:2823381/1‑270 (MQ=255)
                                                                                                                                                                                   aCGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGt                                                                                                            >  2:140078/1‑272 (MQ=255)
                                                                                                                                                                                   aCGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCaat                                                                                           >  2:14635/1‑289 (MQ=255)
                                                                                                                                                                                   aCGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCaa                                                                                            <  1:935469/288‑1 (MQ=255)
                                                                                                                                                                                         accccccAGCGCAACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTAAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTc                                                                                     <  2:184015/286‑1 (MQ=255)
                                                                                                                                                                                         aCTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCa                                                                                                                                                                                  >  2:2159514/1‑196 (MQ=255)
                                                                                                                                                                                             cccAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCg                                                                                                                                                                                                          >  1:1976357/1‑168 (MQ=255)
                                                                                                                                                                                             cccAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGa                                                                                                  <  2:944902/272‑1 (MQ=255)
                                                                                                                                                                                             cccAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTccac                                                                                  >  2:2953164/1‑285 (MQ=255)
                                                                                                                                                                                                          aGCCCTGAGCAAGGGTAGGGAAGCCAATGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTgccgc                                                                    <  2:1233942/289‑1 (MQ=255)
                                                                                                                                                                                                            cccTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCg                                                                                                                                                                                                          >  1:2914022/1‑153 (MQ=255)
                                                                                                                                                                                                                 aGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACaa                                                                                                                                                                     >  2:2322044/1‑185 (MQ=255)
                                                                                                                                                                                                                           gagaAGCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCATTAATGTCGCAGCCCCCACTGCCGCCATCCTCACCTgacca                                                    >  2:2906580/1‑286 (MQ=255)
                                                                                                                                                                                                                                gCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACCAAGTCGTAATA‑GAGCGAGTTGA‑TGCCAGAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATAGTCGCCATTTCCGGGAACAATTTGTTGGCGTTAACCATGGACTGCAAAAATGTCGCACACAACACTGCTGCCAGGCCCACCTGACGCCcaaca                                              >  2:1735795/1‑289 (MQ=255)
                                                                                                                                                                                                                                gCCACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACaa                                                                                                                                                                     >  2:2862799/1‑170 (MQ=255)
                                                                                                                                                                                                                                  cACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGc                                                                                                              <  1:712420/223‑1 (MQ=255)
                                                                                                                                                                                                                                  cACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGAc                                                                                                 >  1:1240082/1‑236 (MQ=255)
                                                                                                                                                                                                                                  cACTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGACGCCAGCCCTACCTGACGACcagcagc                                            >  1:2282520/1‑288 (MQ=255)
                                                                                                                                                                                                                                   aCTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGca                                                                                                                                                                            >  2:2036356/1‑160 (MQ=255)
                                                                                                                                                                                                                                   aCTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTttgttg                                                                                                                >  2:1387601/1‑220 (MQ=255)
                                                                                                                                                                                                                                   aCTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATcc                                                                                                       <  1:1167432/229‑1 (MQ=255)
                                                                                                                                                                                                                                   aCTGTCAAAACCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGaa                                           >  2:2650510/1‑289 (MQ=255)
                                                                                                                                                                                                                                           aaCCAGAAATTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCggg                                                                                                                            >  2:1818119/1‑200 (MQ=255)
                                                                                                                                                                                                                                            aCCAGAAATTGGCGACGCCCCGACAAAGTCGTACTA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGTGCAAGCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGGTATCCATGGACTGCAATAATGTCCCACCCACCACTGCCGCCCGCCCTCCCTGACGCCCCACAGCAAGAACGGt                                   >  2:366002/1‑288 (MQ=255)
                                                                                                                                                                                                                                                 aaaTTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCCGCCCTACCTGACGACCCGCAGAAAGATCGGTcccccg                             >  2:710852/1‑287 (MQ=255)
                                                                                                                                                                                                                                                 aaaTTGGCGACGCCCCGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTg                             >  1:2268899/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             ccccGGCAAAGT‑GGAATATGAGGGAGTTGA‑TGACATAGACGATGTGAATCGTGACGAGCTGGGTAATGAACGGCGTAACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGAACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTaa                 <  2:3102638/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             ccccGAAAAAGTCGTAATA‑GGACGAGATGA‑GGCCACAGACGATGATCATCGTGCCGGGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTaa                 <  2:843749/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             ccacGACAAAGTCGTAATA‑G‑CTCGGGTGAGTGCAATAGACGGTGATCAAGGTGCCGAGCGTGGTACGGAACGGCGTCACGTGGAGATAACAGATAATCGGACCGTTGATCAAGCCGATCACCGCACCAAGCGCACCGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCGCTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTaa                 <  2:2124524/286‑1 (MQ=255)
                                                                                                                                                                                                                                                              cccGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTaa                 <  1:341138/288‑1 (MQ=255)
                                                                                                                                                                                                                                                              cccGACAAAGTCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTaa                 <  1:14635/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                        tCGTAATA‑GAGCGAGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAAc                                                                                                                                                           <  2:1309129/140‑1 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                        
TAGAACACGCCAGACAACGCGTAGATCATCAGCAGGTTCAGGCCGACGTTGACACCAGATACTTTTGCCGCTTCCGGGTTACCGCCAATGGCAAAAATGTTCTTACCGAAGCGGGTTTTGTTCCACAACACCCAGACGAACGCCACCGCAATCAACGCGTAGAAGGTGATGTAAGAGAGACGGAAACTCCCCAGCGCGACAAAGCCCTGAGCAAAGGTAGAGAAGCCACTGTCAAAACCAGAAATTGGGCTCGCCCCGACAAAGTCGTAATA‑GAGGCTGTTGA‑TGCCATAGACGATGATCATCGTGCCGAGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAG  >  CP042583/1811972‑1812528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A