Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F210 I1 R1	4928	368.7	6392010	97.5%	6232209	231.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,929,670	3 bp→CGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,929,670	0	G	C	99.5%	897.6 / NA	380	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (0/1); major base C (166/211); minor base A (2/0); total (168/212)
Fisher's exact test for biased strand distribution p-value = 1.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,929,671	0	C	G	99.5%	891.9 / NA	380	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (1/1); new base G (167/211); total (168/212)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,929,672	0	T	A	99.5%	910.1 / NA	380	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (167/211); minor base C (1/1); total (168/212)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 380 total aligned reads displayed.

ACAGCGACAAAGTTCGCTCCCCACGCCAGGCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAAGCTCGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGGCTATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACCGGACGGATCACGGGTTGGCTGGCATAGGGCGCTACCGCCTGTAGCTGATGATAAAGATCCTGAAT  >  CP042583/1929398‑1929945

|||

aCAGCGACAAAGTTCGCTCCCCACGCCAGGCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTgcg                                                                                                                                                                                                                                                                     <  1:2629811/289‑1 (MQ=255)

aCAGCGACAAAGTTCGCTCCCCACGCCAGGCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTgcg                                                                                                                                                                                                                                                                     <  1:804237/289‑1 (MQ=255)

aCAGCGACAAAGTTCGCTCCCCACGCCAGGCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTgc                                                                                                                                                                                                                                                                      >  2:804237/1‑288 (MQ=255)

     gACAAAGTTCGCTCCCCACGCCAGGCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGcc                                                                                                                                                                                                                                                                   <  1:2883192/286‑1 (MQ=255)

     gACAAAGTTCGCTACCCACGCCGGCCATTGCTTCGCCATATCAGGAGCCACACCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATg                                                                                                                                                                                                                                                                <  2:1458771/289‑1 (MQ=255)

       cAAAGTTCGCTCCCCACGCCAGGCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTCCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGt                                                                                                                                                                                                                                                               <  1:1374432/288‑1 (MQ=255)

             tCGCTCCCCACGCCAGGCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATtctc                                                                                                                                                                                                                                                        <  2:2262811/289‑1 (MQ=255)

                  ccccACGCCAGGCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGCAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGc                                                                                                                                                                                                                                                   <  2:908170/289‑1 (MQ=255)

                             gCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAgcgc                                                                                                                                                                                                                                        >  1:51/1‑289 (MQ=255)

                              cATTGCTCCGCCATATCAGGAGCCACAGCCAGCAAACCCGCCGCTTTCCCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTGCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAgcgcg                                                                                                                                                                                                                                       <  2:51/289‑1 (MQ=255)

                                  gctggGCCATATCAGGAGCCAAAGCCAGAAAACCCGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGc                                                                                                                                                                                                                                   <  2:1577427/289‑1 (MQ=255)

                                  gctgcGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGc                                                                                                                                                                                                                                   <  1:585428/289‑1 (MQ=255)

                                  gctgcGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTAAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCGGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGc                                                                                                                                                                                                                                   <  2:698691/289‑1 (MQ=255)

                                  gccgcgcCATATCAGGAACCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGc                                                                                                                                                                                                                                   <  1:2775271/286‑1 (MQ=255)

                                      cgcCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGt                                                                                                                                                                                                                               >  1:298132/1‑289 (MQ=255)

                                            atCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCcaca                                                                                                                                                                                                                         <  1:992104/289‑1 (MQ=255)

                                              cAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACt                                                                                                                                                                                                                       <  1:1447196/289‑1 (MQ=255)

                                               cggAGCCCCAGCCAAAAAACCAGCCGCTTTACCCGCAGCACGGATCAGCCGAATACTGGTTTCAATAATGCGCCGCACTTCCGGGTTCCCGGCGTTATCCTGGTAGCCCAACGACGCACAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCTACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACt                                                                                                                                                                                                                       <  2:393187/287‑1 (MQ=255)

                                                 gAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTgg                                                                                                                                                                                                                     >  1:1054729/1‑288 (MQ=255)

                                                  aGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGc                                                                                                                                                                                                                    <  1:1261202/288‑1 (MQ=255)

                                                   gCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGcc                                                                                                                                                                                                                   >  1:2544156/1‑288 (MQ=255)

                                                     cacaGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGTGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGccc                                                                                                                                                                                                                  <  2:2355802/287‑1 (MQ=255)

                                                       caGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACTTCGATGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACCGACAAAGCGAATCGGTAACCTGCGCCATGTAATTCTCAATGCGTCCACAGCCCGCAGCCCGTGCCACACTGCCCCCGa                                                                                                                                                                                                               >  2:3189857/1‑288 (MQ=255)

                                                        aGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGac                                                                                                                                                                                                              >  1:2586583/1‑288 (MQ=255)

                                                              aaaaCCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGc                                                                                                                                                                                                       <  2:597272/289‑1 (MQ=255)

                                                              aaaaCCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTAAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGc                                                                                                                                                                                                       <  2:1092029/289‑1 (MQ=255)

                                                              aaaaCCAGCCGCGTTACCCGCAGCACGGATCCGCCGAAAACTGGTTTAAATAAGTCGCTGAACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGAAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGc                                                                                                                                                                                                       <  2:2779792/289‑1 (MQ=255)

                                                               aaaCCAGCCGCTTTCCCCGAAGAACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCt                                                                                                                                                                                                      <  2:2824587/289‑1 (MQ=255)

                                                               aaaCCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCt                                                                                                                                                                                                      <  1:291878/289‑1 (MQ=255)

                                                               aaaCCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCt                                                                                                                                                                                                      <  2:468990/289‑1 (MQ=255)

                                                                   cAGCCGCTTTACCCGCAACACGGGTCCGGCGAATACTGGGTTCAATAATTCCCTGCACTTCCGGGTGACCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCAACA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCAcc                                                                                                                                                                                                  <  2:1762377/289‑1 (MQ=255)

                                                                             aCCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCCCCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGggagga                                                                                                                                                                                        <  1:17520/289‑1 (MQ=255)

                                                                             aCCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGggagga                                                                                                                                                                                        <  1:602662/289‑1 (MQ=255)

                                                                                   cgcaCGGAACCGCCCAATACTGGTTTCAAAAATTCGCTGACCTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAgcgc                                                                                                                                                                                  <  2:1054729/288‑1 (MQ=255)

                                                                                         gATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCa                                                                                                                                                                            >  1:3033678/1‑289 (MQ=255)

                                                                                             cgccgAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGac                                                                                                                                                                         >  2:1618964/1‑288 (MQ=255)

                                                                                                 gAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGAcaccac                                                                                                                                                                    <  1:1401108/289‑1 (MQ=255)

                                                                                                  aaTACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGACTCGTTAACTTGCGCCATGTCATTCTCAATGCGTCCCCAGCGCGCAGCCCGTCCCACCCTCGCCCCGACACCACGCCCACCTTAGGCAGGATAGCGCCGGGCAGAcccccc                                                                                                                                                                    >  2:648202/1‑286 (MQ=255)

                                                                                                  aaTACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGcc                                                                                                                                                                                                                                                                   >  2:1428147/1‑193 (MQ=255)

                                                                                                         gTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGcc                                                                                                                                                                                                                                  >  1:2273157/1‑219 (MQ=255)

                                                                                                         gTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCCGACACCACCTGACGt                                                                                                                                                             >  1:3085761/1‑288 (MQ=255)

                                                                                                            tCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACt                                                                                                                                                                                                                       >  1:3169138/1‑227 (MQ=255)

                                                                                                             cAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTg                                                                                                                                                        <  2:180725/289‑1 (MQ=255)

                                                                                                             cAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTg                                                                                                                                                        <  1:651019/289‑1 (MQ=255)

                                                                                                             cAATAATTCGCTGCACTTCCGGGGGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAATATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTg                                                                                                                                                        <  2:569295/289‑1 (MQ=255)

                                                                                                               ataatTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCGCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGtt                                                                                                                                                      <  1:940378/289‑1 (MQ=255)

                                                                                                               ataatTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGt                                                                                                                                                       >  1:1034923/1‑288 (MQ=255)

                                                                                                                  atTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCgg                                                                                                                                                   <  2:298132/289‑1 (MQ=255)

                                                                                                                  atTCGCGTCACTTCCGGGTGCCCGGCGGTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCgg                                                                                                                                                   <  2:2874137/289‑1 (MQ=255)

                                                                                                                   ttCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGAGAACGCGTGGCAGACACCACCTGACCTGCCTGTGCgg                                                                                                                                                   >  2:2431140/1‑288 (MQ=255)

                                                                                                                        tGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGAAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGAAggg                                                                                                                                                                                            >  1:474232/1‑242 (MQ=255)

                                                                                                                          cACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACg                                                                                                                                                                                                        <  1:1766216/228‑1 (MQ=255)

                                                                                                                                cGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATc                                                                                                                                     <  1:151572/289‑1 (MQ=255)

                                                                                                                                cGGGTGCCCGGCGTTATCCGGGTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATc                                                                                                                                     <  1:2507236/289‑1 (MQ=255)

                                                                                                                                         ggCGTTATCCGGGTAGACCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCAcc                                                                                                                                                                                                  <  1:408074/219‑1 (MQ=255)

                                                                                                                                                     gTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCt                                                                                                                                                                                                      >  2:2904384/1‑203 (MQ=255)

                                                                                                                                                     gTAGCCCAACGACGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGt                                                                                                                                                                                                <  1:2319445/209‑1 (MQ=255)

                                                                                                                                                        gcccaacgacGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCa                                                                                                             <  2:1034923/280‑1 (MQ=255)

                                                                                                                                                         cccaacgacGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATc                                                                                                                                     >  1:128958/9‑264 (MQ=255)

                                                                                                                                                         cccaacgacGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATc                                                                                                                                     <  2:128958/256‑1 (MQ=255)

                                                                                                                                                          ccaacgacGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑CCAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCa                                                                                                             <  1:1906773/280‑1 (MQ=255)

                                                                                                                                                              cgacGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTaa                                                                                                                                                                                                                                                             >  1:1723202/4‑139 (MQ=255)

                                                                                                                                                              cgacGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAgcgc                                                                                                                                                                                  <  1:1685121/211‑1 (MQ=255)

                                                                                                                                                                   cAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAAc                                                                                                                                                                                                                                                                          <  1:1607682/121‑1 (MQ=255)

                                                                                                                                                                   cAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAgg                                                                                                    >  2:1372499/1‑287 (MQ=255)

                                                                                                                                                                                aGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGCGTTTGCGCGCCAATATCCAGGCCTTGTTTAATCAGc                                                                                     >  2:2503291/1‑289 (MQ=255)

                                                                                                                                                                                       aTAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCa                                                                                                                                                                                                    >  2:185016/1‑171 (MQ=255)

                                                                                                                                                                                            cacGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCt                                                                                                                                                                                                      <  2:1500445/164‑1 (MQ=255)

                                                                                                                                                                                            cacGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCt                                                                                                                                                                                                      <  1:2019318/164‑1 (MQ=255)

                                                                                                                                                                                            cacGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCt                                                                                                                                                                                                      >  2:2019318/1‑164 (MQ=255)

                                                                                                                                                                                            cacGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAgcg                                                                                                                                                                                   >  2:3150282/1‑183 (MQ=255)

                                                                                                                                                                                            cacGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGTTTTACTGCCt                                                                         >  1:1475212/1‑289 (MQ=255)

                                                                                                                                                                                             acGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCTGGATCAGTAGAGTTTGCGCCGCAATAACCAGGACTTGTTTAATCAGCGGTTTACTGCCt                                                                         >  2:1648098/1‑288 (MQ=255)

                                                                                                                                                                                             acGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGAc                                                                                                  <  1:1813397/263‑1 (MQ=255)

                                                                                                                                                                                               gCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGc                                                                                                                                                                                                                                                   <  2:173017/116‑1 (MQ=255)

                                                                                                                                                                                                       tCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTCGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGCGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTAATGCCTTCCACcggacg                                                              >  1:1959/1‑289 (MQ=255)

                                                                                                                                                                                                           ttCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGa                                                                                                                                          <  2:2583524/209‑1 (MQ=255)

                                                                                                                                                                                                             cGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGAcacca                                                                                                                                                                     <  1:1019443/180‑1 (MQ=255)

                                                                                                                                                                                                             cGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCa                                                                                                             >  1:1345115/1‑236 (MQ=255)

                                                                                                                                                                                                                            tgTCCAGTTTCTCCAGTGCCGTTTTCCTTTCCACCTGCACCA‑ACAGACCAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCGCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCAGCGGGATCAGTAGAGTTTGCGCGCTAATGTCCAGGACTTGTTTATTCAGCGGTTTACTGCCTTCCACCGGACGGATCACGGGTTGGCTGGCATa                                         <  2:967294/288‑1 (MQ=255)

                                                                                                                                                                                                                            cGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCt                                                                                                                                                                                                      <  1:1638424/132‑1 (MQ=255)

                                                                                                                                                                                                                            cGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCt                                                                                                                                                                                                      <  2:1917805/132‑1 (MQ=255)

                                                                                                                                                                                                                                     gatcccatGCCGTTTTACTTTCCACCTG‑ACAACACAGAAAAAGCGAATCGTTGACGGGCGCCATGTAAGTCTCACTGCGGCCCCAGCGCGCAGCCCGGGACACACTGGCCCCGAACCCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACCGGACGGATCACGGGTTGGCTGGCATAGGGCGCTa                                 <  2:2603040/281‑1 (MQ=255)

                                                                                                                                                                                                                                      aTCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACCGGACGGATCACGGGTTGGCTGGCATAGGGCGCTAcc                               >  1:2462006/1‑289 (MQ=255)

                                                                                                                                                                                                                                        ccAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACCGGACGGATCACGGGTTGGCTGGCATAGGGCGCTa                                 >  2:3085646/1‑285 (MQ=255)

                                                                                                                                                                                                                                            tGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTgcg                                                                                                                  <  1:2856913/200‑1 (MQ=255)

                                                                                                                                                                                                                                             gCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTg                                                                                                                    <  1:2113202/197‑1 (MQ=255)

                                                                                                                                                                                                                                             gCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTg                                                                                                                    >  2:2113202/1‑197 (MQ=255)

                                                                                                                                                                                                                                             gCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCa                                                                     >  2:2686770/1‑244 (MQ=255)

                                                                                                                                                                                                                                             gCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCa                                                                     <  1:2686770/244‑1 (MQ=255)

                                                                                                                                                                                                                                             gCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACcgga                                                                >  2:429103/1‑249 (MQ=255)

                                                                                                                                                                                                                                             gCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACcgga                                                                <  1:429103/249‑1 (MQ=255)

                                                                                                                                                                                                                                              ccGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTgcg                                                                                                                  <  2:1253895/198‑1 (MQ=255)

                                                                                                                                                                                                                                                 ttttACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGac                                                                                                                                                                         >  2:1692474/1‑140 (MQ=255)

                                                                                                                                                                                                                                                 ttttACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACCGGACGGATCACGGGTTGGCTGGCATAGGGCGCTACCGCCTGTAGCtg                    >  1:1224817/1‑289 (MQ=255)

                                                                                                                                                                                                                                                  tttACTTTCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATc                                                                                                                                     <  1:54576/175‑1 (MQ=255)

                                                                                                                                                                                                                                                         tCCACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGc                                                                                                                                                                             <  1:2403953/128‑1 (MQ=255)

                                                                                                                                                                                                                                                           cACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACCGGACGGATCACGGGTTGGCTGGCATAGGGCGCTACCGCCTGTAGCTGATGATaa             <  2:731224/286‑1 (MQ=255)

                                                                                                                                                                                                                                                           cACCTGCACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACCGGACGGATCACGGGTTGGCTGGCATAGGGCGCTACCGCCTGTAGCTGATGATaa             >  1:731224/1‑286 (MQ=255)

                                                                                                                                                                                                                                                                 cACCA‑ACAGACAAAGCGAATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCa                                                                                                             <  2:1347601/184‑1 (MQ=255)

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ACAGCGACAAAGTTCGCTCCCCACGCCAGGCATTGCTGCGCCATATCAGGAGCCACAGCCAGAAAACCAGCCGCTTTACCCGCAGCACGGATCCGCCGAATACTGGTTTCAATAATTCGCTGCACTTCCGGGTGCCCGGCGTTATCCGGGTAGCCCAAGCTCGCAGAAAGATCCGCAGGTCCAATAAACACGCCATCAATCCCTTCGACGTCGAGGATTTCGTCCAGGTTATCCAGTGCCGTTTTACTTTCCACCTGCACCA‑ACAGACAAAGGCTATCGTTAACTTGCGCCATGTAATTCTCAATGCGTCCCCAGCGCGCAGCCCGTGCCACACTGGCCCCGACACCACGCTCACCGTAGGGAGGATAGCGCGTGGCAGACACCACCTGACGTGCCTGTTCGGCAGTATCGACCATCGGGATCAGTAGAGTTTGCGCGCCAATATCCAGGACTTGTTTAATCAGCGGTTTACTGCCTTCCACCGGACGGATCACGGGTTGGCTGGCATAGGGCGCTACCGCCTGTAGCTGATGATAAAGATCCTGAAT  >  CP042583/1929398‑1929945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A