Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,795,440 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,795,4400GC99.6% 529.3 / NA 224intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (103/120);  minor base A (1/0);  total (104/120)
Fisher's exact test for biased strand distribution p-value = 4.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,795,4410CG99.1% 521.5 / NA 224intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base G (103/119);  total (104/120)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,795,4420TA99.6% 531.4 / NA 224intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (104/119);  minor base C (0/1);  total (104/120)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 224 total aligned reads displayed.

TGCATTACCGCCTTCAGTCCCCGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGGCTACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCGCTTTTTTTCAGCGGTAACGTTTCGAGACGGTTTTTCAGCAACACCA  >  CP042583/1795161‑1795717
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                   
tGCATTCCCGCCTTCAGTCCCCGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGa                                                                                                                                                                                                                                                                              <  2:832180/289‑1 (MQ=255)
  cATTACCGCCTTCAGTCCCCGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCGTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCCGTGCTTCCCCGACTACAGCCACCACCACCCAAGATTGTTTCGCCGTCTCGACCCCTTCACCCATCATCACTCTCGGCCAACGCggcc                                                                                                                                                                                                                                                                             >  2:414864/1‑286 (MQ=255)
           cTTCAGTCCCCGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGAc                                                                                                                                                                                                                                                                   <  2:1393611/289‑1 (MQ=255)
            ttCAGTCCCCGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAACCCTCTCTTGCGGCGAACGCGGATCTACTTTGAc                                                                                                                                                                                                                                                                   >  2:672133/1‑288 (MQ=255)
             tCAGTGCCCGCAAGACAGGTTTCCAGGAGCGAATCAGCCTGCTGATATTCTTTCACCAGCGCCAGCGGAGGCCCGTTCATCAGCACCGGCACCGGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCg                                                                                                                                                                                                                                                                 <  2:1758101/289‑1 (MQ=255)
             tCAGTCCCCGCAACCCGGGTTTCCAGAATCGCTTCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGCCGCCCGTTCATCAGCCCCAGCACCAGCGGTTTACCGGTGGCTTTCAGCACCGCAATCAAGTCACGTTGGCTTTGCGGAATGGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCg                                                                                                                                                                                                                                                                 <  2:210168/289‑1 (MQ=255)
             tCAGTCCCCGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCg                                                                                                                                                                                                                                                                 <  1:1549947/289‑1 (MQ=255)
             tCAGTCCCCGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCg                                                                                                                                                                                                                                                                 <  1:1540186/289‑1 (MQ=255)
             tCAGTCCCCGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCg                                                                                                                                                                                                                                                                 <  2:719694/289‑1 (MQ=255)
             tCAGTCCCCGCAAACCAGGATTCCAGAATCGCATCAGCCTGCTGTGCTTCTTTCACCAGCGCCAGCGGAAGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGAGATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCg                                                                                                                                                                                                                                                                 <  2:1648439/289‑1 (MQ=255)
                  ccccGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGcttct                                                                                                                                                                                                                                                            >  1:1707563/1‑289 (MQ=255)
                        aaaCCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATa                                                                                                                                                                                                                                                       <  1:1883502/288‑1 (MQ=255)
                                        aTCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGa                                                                                                                                                                                                                                      >  1:624255/1‑289 (MQ=255)
                                          cGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATa                                                                                                                                                                                                                                    <  1:1866954/289‑1 (MQ=255)
                                                   ctgctgATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCttt                                                                                                                                                                                                                            <  1:107194/288‑1 (MQ=255)
                                                      ctgATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTc                                                                                                                                                                                                                         >  1:1998884/1‑288 (MQ=255)
                                                                 ccgccagcgccatcgGCCGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGtt                                                                                                                                                                                                             <  1:733348/286‑1 (MQ=255)
                                                                   aCCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCg                                                                                                                                                                                                           <  2:1998884/289‑1 (MQ=255)
                                                                    ccagcgccagcgGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGc                                                                                                                                                                                                          <  2:379816/289‑1 (MQ=255)
                                                                     cagcgccagccGACGCCCCGTCATCATCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGcc                                                                                                                                                                                                         <  2:476655/289‑1 (MQ=255)
                                                                        cgccagcgGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGct                                                                                                                                                                                                                                                               >  1:1870082/1‑232 (MQ=255)
                                                                        cgccagcgGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCa                                                                                                                                                                                                                        >  1:402432/1‑271 (MQ=255)
                                                                        cgccagcgGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCa                                                                                                                                                                                                                        <  2:402432/271‑1 (MQ=255)
                                                                        cgccagcgGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCt                                                                                                                                                                                                      >  1:1020429/1‑289 (MQ=255)
                                                                         gccagcgGACGCCCGTTCATCAGCCCCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGccc                                                                                                                                                                                                        <  1:378317/286‑1 (MQ=255)
                                                                         gccagcgGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCtt                                                                                                                                                                                                     <  2:186931/289‑1 (MQ=255)
                                                                         gccagcgGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCtt                                                                                                                                                                                                     <  1:1680373/289‑1 (MQ=255)
                                                                         gccagcgGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCt                                                                                                                                                                                                      <  2:1803700/288‑1 (MQ=255)
                                                                               ggACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCa                                                                                                                                                                                                <  1:96981/288‑1 (MQ=255)
                                                                                 aCGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATa                                                                                                                                                                                              <  1:1249245/288‑1 (MQ=255)
                                                                                   gCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACa                                                                                                                                                                                            >  1:847797/1‑288 (MQ=255)
                                                                                        ttCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACtt                                                                                                                                                                                      >  1:1297560/1‑289 (MQ=255)
                                                                                        ttCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTCCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACtt                                                                                                                                                                                      >  2:214112/1‑289 (MQ=255)
                                                                                                        ccagcGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCa                                                                                                                                                                                         >  1:1731002/1‑270 (MQ=255)
                                                                                                          agcGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGccc                                                                                                                                                                                                        <  1:1970357/253‑1 (MQ=255)
                                                                                                          agcGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACg                                                                                                                                                                     >  1:1744960/1‑288 (MQ=255)
                                                                                                           gcGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCATTCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGc                                                                                                                                                                   >  2:786491/1‑289 (MQ=255)
                                                                                                           gcGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATa                                                                                                                                                                                              >  2:1611235/1‑262 (MQ=255)
                                                                                                            cGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGc                                                                                                                                                                   <  2:1252697/288‑1 (MQ=255)
                                                                                                            cGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGc                                                                                                                                                                   <  2:503341/288‑1 (MQ=255)
                                                                                                                   ccGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTg                                                                                                                                                                                                   >  1:1823636/1‑249 (MQ=255)
                                                                                                                      gTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATc                                                                                                                                                         <  2:1020429/288‑1 (MQ=255)
                                                                                                                      gTGGCTGTCCGCGCCGCAATCAAGGCACGTTGGCTTTGCGGAATGGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATc                                                                                                                                                         <  2:1646345/288‑1 (MQ=255)
                                                                                                                        ggCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCg                                                                                                                                                      <  1:1378930/289‑1 (MQ=255)
                                                                                                                         gCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATTCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGct                                                                                                                                                                                                                                                               >  1:211923/1‑183 (MQ=255)
                                                                                                                         gCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATa                                                                                                                                                                                              <  2:1538977/248‑1 (MQ=255)
                                                                                                                         gCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCgg                                                                                                                                                     >  2:1460334/1‑289 (MQ=255)
                                                                                                                           tttCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCCATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGt                                                                                                                                                    <  2:139967/288‑1 (MQ=255)
                                                                                                                           tttCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGt                                                                                                                                                    >  2:340020/1‑288 (MQ=255)
                                                                                                                                 cgccgcAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACg                                                                                                                                             >  1:1598759/1‑289 (MQ=255)
                                                                                                                                   ccgcAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCg                                                                                                                                                      <  2:1875781/278‑1 (MQ=255)
                                                                                                                                    cgcAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCttt                                                                                                                                                                                                                            <  2:1103117/207‑1 (MQ=255)
                                                                                                                                    cgcAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTc                                                                                                                                          <  2:1744960/289‑1 (MQ=255)
                                                                                                                                    cgcAATAAAGGCACGTTGGCTTTGCGGAATAGGGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTc                                                                                                                                          <  1:1427133/289‑1 (MQ=255)
                                                                                                                                     gcAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTc                                                                                                                                          >  2:1200709/1‑288 (MQ=255)
                                                                                                                                       aaTCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACg                                                                                                                                       <  2:624255/289‑1 (MQ=255)
                                                                                                                                            agtgtcGTTGGCTTTGCGGAATATTGATATCAGTCCGCGTGGAGGCTTCGTGCTCCCTCCCCTGTGCCTCTCCGACCACAGCCACCACCACATCAAATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCACTTGCGGCCAACGCGGCTCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGGTAATGCCGTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTg                                                                                                                                  <  2:1977877/284‑1 (MQ=255)
                                                                                                                                               cACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATc                                                                                                                               <  2:459746/289‑1 (MQ=255)
                                                                                                                                                     ggCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCg                                                                                                                                                                                                                                                                 >  2:931544/1‑153 (MQ=255)
                                                                                                                                                     ggCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCg                                                                                                                                                                                                                                                                 <  1:931544/153‑1 (MQ=255)
                                                                                                                                                                  ggtgtTATCGGTCCGGCTGGAGGCTTCGTGCGCCCTCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGAc                                                                                                            <  2:1797349/288‑1 (MQ=255)
                                                                                                                                                                  aGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGAc                                                                                                            <  1:391939/289‑1 (MQ=255)
                                                                                                                                                                     gATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAg                                                                                                         <  1:1464962/289‑1 (MQ=255)
                                                                                                                                                                     gATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAg                                                                                                         <  1:243728/289‑1 (MQ=255)
                                                                                                                                                                      atatCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGa                                                                                                                                                                       >  1:1101715/1‑226 (MQ=255)
                                                                                                                                                                         tCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCCATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTCCTTCATACTGATTCAGGAAATCGATAATGTCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGAACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGCTCGGCAAGACCGGCTGTGGACCAGcgg                                                                                                      >  2:307031/1‑286 (MQ=255)
                                                                                                                                                                         tCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTg                                                                                                      >  1:461399/1‑288 (MQ=255)
                                                                                                                                                                           ggTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGccc                                                                                                   >  1:607219/1‑289 (MQ=255)
                                                                                                                                                                            gTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGccc                                                                                                   >  2:392009/1‑288 (MQ=255)
                                                                                                                                                                            gTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCGTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAACCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACCGCTCTTTACAGTTTTGCCCGACGGCATTTTTAATCCCGGTCAGTACGCTCACGGATTGATCGGCAACACCAGCTGCGGACCAGCCGccc                                                                                                   >  2:352487/1‑288 (MQ=255)
                                                                                                                                                                             tCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGt                                                                                                                                                >  1:21819/1‑242 (MQ=255)
                                                                                                                                                                             tCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCa                                                                                                  >  1:515442/1‑288 (MQ=255)
                                                                                                                                                                                      aGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCAtcacgtcac                                                                                         <  1:35689/288‑1 (MQ=255)
                                                                                                                                                                                          ttccggcgcCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCCGATTGTTTCGCCGTCTCCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTa                                                                                    <  2:57675/284‑1 (MQ=255)
                                                                                                                                                                                                          tgtgCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCTCTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGc                                                                     >  2:228766/1‑288 (MQ=255)
                                                                                                                                                                                                          tgtgCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGc                                                                     >  1:4777/1‑288 (MQ=255)
                                                                                                                                                                                                           gtgCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCAtcacgt                                                                                            >  2:1679192/1‑264 (MQ=255)
                                                                                                                                                                                                           gtgCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGccc                                                                   <  1:1007044/289‑1 (MQ=255)
                                                                                                                                                                                                               ttaaCCGACTACAGCCACAACACCATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAac                                                                <  2:1435064/285‑1 (MQ=255)
                                                                                                                                                                                                                 cACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAacca                                                              >  1:1125336/1‑288 (MQ=255)
                                                                                                                                                                                                                 cACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAac                                                                >  1:1844457/1‑286 (MQ=255)
                                                                                                                                                                                                                 cACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCAGCACGTCCCGTTTACTGTCCGCCATTGGcccaccca                                                              >  2:1294179/1‑288 (MQ=255)
                                                                                                                                                                                                                   ccGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCg                                                           <  1:672133/289‑1 (MQ=255)
                                                                                                                                                                                                                                ccaccacATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGAc                                                                                                                                                                                                                                                                   <  2:884600/76‑1 (MQ=255)
                                                                                                                                                                                                                                ccaccacATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGAc                                                                                                                                                                                                                                                                   >  1:884600/1‑76 (MQ=255)
                                                                                                                                                                                                                                ccaccacATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGgccga                                              >  1:839827/1‑286 (MQ=255)
                                                                                                                                                                                                                                  accacATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTc                                                                                                                                          <  1:800458/195‑1 (MQ=255)
                                                                                                                                                                                                                                      caTCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGgccgattttt                                         >  1:1618624/1‑280 (MQ=255)
                                                                                                                                                                                                                                      caTCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCA‑TTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCCGATTTTTTc                                       >  1:1788781/1‑289 (MQ=255)
                                                                                                                                                                                                                                       aTCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCCGATTTTTTc                                       >  2:324674/1‑289 (MQ=255)
                                                                                                                                                                                                                                            aTTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCCGATTTTTTCAGCgg                                  >  2:1954099/1‑289 (MQ=255)
                                                                                                                                                                                                                                                tttCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCCGATTTTTTCAGCGGTAAc                              >  1:316422/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   cGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCAtcacgt                                                                                            <  1:1587435/224‑1 (MQ=255)
                                                                                                                                                                                                                                                   cGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCAtcacgt                                                                                            >  2:1587435/1‑224 (MQ=255)
                                                                                                                                                                                                                                                          tGCACCGCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCCGATTTTTTCAGCGGTAACGTTTCGAGAc                    >  2:1828321/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                gCTTCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCACTGGTGGCCGATTTTTTCCGCGGTAACGTTTCGAGACGGattt              >  2:698386/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  ttCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTa                                                                                                                                               >  1:542668/1‑158 (MQ=255)
                                                                                                                                                                                                                                                                  ttCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCCCGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCCGATTTTTTCAGCGGTAACGTTTCGAGACGGTTTTTc            >  1:1258335/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  ttCATCAATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCCGATTTTTTCAGCGGTAACGTTTCGAGACGGTTTTTc            >  1:1652986/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                    catcaATCATCTCTTGCGGCGAACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCCGATTTTTTCAGCGGTAACGTTTCGAGACGGTTTTTCa           >  1:1780314/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                   
TGCATTACCGCCTTCAGTCCCCGCAAACCAGGTTTCCAGAATCGCATCAGCCTGCTGATCTTCTTTCACCAGCGCCAGCGGACGCCCGTTCATCAGCACCAGCACCAGCGGTTTACCGGTGGCTTTCAGCGCCGCAATCAAGTCACGTTGGCTTTGCGGAATAGTGATATCGGTCCGGCTGGAGGCTTCGTGCGCCATCCCCTGTGCTTCACCGACTACAGCCACCACCACATCAGATTGTTTCGCCGTCTGCACCGCTTCATCAATCATCTCTTGCGGGCTACGCGGATCGACTTTGACCGCTTCTTCATACTGATTCAGGAAATCGATAATGCCTTTGTCACTGGTAACGTTCGCCCCTTTGGCATACAGCACTTTACCGTTTTCACCGACGGCATTTTTAATCCCGGTCAGTACGGTCACGGATTGATCGGCAACACCGGCTGCGGACCAGCTGCCCATCACGTCACGTTTACTGTCCGCCAGTGGCCCAACCACCGCAATGGTGGCGCTTTTTTTCAGCGGTAACGTTTCGAGACGGTTTTTCAGCAACACCA  >  CP042583/1795161‑1795717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A