Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,919,732 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,919,7320AT99.2% 588.4 / NA 252intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (133/117);  minor base C (2/0);  total (135/117)
Fisher's exact test for biased strand distribution p-value = 5.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,919,7330GC99.2% 583.9 / ‑4.6 252intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (135/115);  minor base A (0/2);  total (135/117)
Fisher's exact test for biased strand distribution p-value = 2.15e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,919,7340CG100.0% 594.5 / NA 252intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (135/117);  total (135/117)

Only 100 of 252 total aligned reads displayed.

GGAGTGCTATGACCTGTTTGTTCAGGCAGCTCAACAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTAGCATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACAGCGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTATTCAGCCGGGGGAAATTTTGCCCTGTTGTTGCCGGGCAAAAGGCGA  >  CP042583/1919455‑1920008
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                    
  aGTGCTATGACCTGTTTGTTCAGGCAGCTCAACAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCCGGAAGTGGAAGGCAGGTCTTATCTGGTCGGGAAGATTGCCCCGGAAATGGaca                                                                                                                                                                                                                                                                            >  2:1803977/1‑288 (MQ=255)
  aGTGCTATGACCTGTTTGTTCAGGCAGCTCAACAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGaca                                                                                                                                                                                                                                                                            >  1:1673290/1‑288 (MQ=255)
  aGTGCTATGACCTGTTTGTTCAGGCAGCTCAACAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGa                                                                                                                                                                                                                                                                              <  1:1345866/286‑1 (MQ=255)
          gACCTGTTTGTGACGGTAGATTAAAAGGAGAAAGACTGGGCGGGTTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTTTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAGCGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGAt                                                                                                                                                                                                                                                                    <  2:1709012/288‑1 (MQ=255)
           aCCTGTTTGTTCAGGCAGCTCAACAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGAttt                                                                                                                                                                                                                                                                  >  2:1085553/1‑289 (MQ=255)
                tttgttCAGGCAGCTCAACAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTa                                                                                                                                                                                                                                                             >  1:284388/1‑289 (MQ=255)
                          cAGCTCAACAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCAGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAAAGTGCAGGTTGCTCCGCAGGAAGCGGCAGTCAGCTAGTATATGGTCGGGCTGATTGACTCGGCAGTGGACACCGCTGATTTGAGGAACTTTCAGc                                                                                                                                                                                                                                                    >  2:526484/1‑288 (MQ=255)
                              tCAACAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGa                                                                                                                                                                                                                                               >  2:1646263/1‑289 (MQ=255)
                                aaCAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTAGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATg                                                                                                                                                                                                                                             <  1:1854336/289‑1 (MQ=255)
                                      agaAAGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGc                                                                                                                                                                                                                                           <  1:788186/285‑1 (MQ=255)
                                          aGACTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGCGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGtt                                                                                                                                                                                                                                    >  1:720757/1‑288 (MQ=255)
                                             cTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTAcc                                                                                                                                                                                                                                 <  1:572382/288‑1 (MQ=255)
                                             cTGGGCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGCGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTAccc                                                                                                                                                                                                                                <  2:720757/289‑1 (MQ=255)
                                               gggCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGGCCCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGGTCTGATTGTCcggtgtaaccg                                                                                                                                                                                                                               >  2:967092/1‑279 (MQ=255)
                                                ggCGGATTATCTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTgc                                                                                                                                                                                                                             >  1:1206787/1‑289 (MQ=255)
                                                          cTGTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTgg                                                                                                                                                                                                                   <  2:480469/289‑1 (MQ=255)
                                                          cTGTTCCACGACGGTTGAAGGATTGGTCTGAATAAAGACAATCTCTGCCAGTACGTTTAATACCTCACCAATCTCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCACCACTgg                                                                                                                                                                                                                   <  2:1521382/289‑1 (MQ=255)
                                                            gTTCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑ca                                                                                                                                                                                                               <  2:1966855/289‑1 (MQ=255)
                                                              tCCGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑caca                                                                                                                                                                                                             <  1:1281130/289‑1 (MQ=255)
                                                               ccGCGACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑cacac                                                                                                                                                                                                            >  1:337972/1‑289 (MQ=255)
                                                                  cgACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGAttt                                                                                                                                                                                                                                                                  >  1:128456/1‑234 (MQ=255)
                                                                  cgACGGTTCGATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑cacaca                                                                                                                                                                                                           >  1:1698105/1‑287 (MQ=255)
                                                                     cggttcgaTGATTGGTCTGAATAAATGCATTATCTGCCAGTACGTTGAATACATAACCAATATCCGTATGCAGGCAGTCGGTTTGGCTCTGCCGTTCCAGACGCGCTCCCACCCGATCCCGGGGATCAAAACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAActg                                                                                                                                                                                                       <  2:1546982/281‑1 (MQ=255)
                                                                         tcgaTGATTGGTCTGAATAAAGACATTGTCGGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCtgtg                                                                                                                                                                                                  <  1:587055/286‑1 (MQ=255)
                                                                           gaTGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGcc                                                                                                                                                                                                <  1:524033/288‑1 (MQ=255)
                                                                           gaTGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGcc                                                                                                                                                                                                <  1:1398286/288‑1 (MQ=255)
                                                                            aTGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGCTGGCCCGCGTTACCCTGCGCATCCCTGG‑‑CACCCAActgcttggccc                                                                                                                                                                                               >  2:936959/1‑283 (MQ=255)
                                                                                  ggTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGa                                                                                                                                                                                         >  1:974953/1‑289 (MQ=255)
                                                                                    tCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGaa                                                                                                                                                                                        <  1:954714/288‑1 (MQ=255)
                                                                                    tCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGaa                                                                                                                                                                                        <  2:491763/288‑1 (MQ=255)
                                                                                         aTAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACAccct                                                                                                                                                                                  <  1:554743/289‑1 (MQ=255)
                                                                                         aTAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACAccc                                                                                                                                                                                   <  1:870066/288‑1 (MQ=255)
                                                                                             aGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATTAACAcccttcc                                                                                                                                                                               >  2:394626/1‑288 (MQ=255)
                                                                                                  ttCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCCCTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTg                                                                                                                                                                         >  2:808362/1‑289 (MQ=255)
                                                                                                  ttCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTg                                                                                                                                                                         >  2:870257/1‑289 (MQ=255)
                                                                                                      ctGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTggcgg                                                                                                                                                                     <  1:1802013/289‑1 (MQ=255)
                                                                                                          cAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGgcgc                                                                                                                                                                  <  1:732980/288‑1 (MQ=255)
                                                                                                             tACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGGAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGa                                                                                                                                                              >  2:1284378/1‑289 (MQ=255)
                                                                                                              aCGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTg                                                                                                                                                                <  1:1085553/286‑1 (MQ=255)
                                                                                                               cGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGaa                                                                                                                                                             >  1:1303964/1‑288 (MQ=255)
                                                                                                                 ttGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGT‑GAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATcc                                                                                                                                                          >  2:377235/1‑288 (MQ=255)
                                                                                                                 acgAATCCATCACCAATATCCGTATGCAGACAGTCTGTTTGGACCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATcc                                                                                                                                                          <  1:1947817/287‑1 (MQ=255)
                                                                                                                  tGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATcc                                                                                                                                                          <  1:1132401/288‑1 (MQ=255)
                                                                                                                   gAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCa                                                                                                                                                                                               <  1:1517328/250‑1 (MQ=255)
                                                                                                                         aTCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAAtgt                                                                                                                                                  >  1:1506642/1‑289 (MQ=255)
                                                                                                                           cACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGGCACACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAAtgt                                                                                                                                                  >  2:1665966/1‑289 (MQ=255)
                                                                                                                           cACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑ca                                                                                                                                                                                                               >  2:1516096/1‑226 (MQ=255)
                                                                                                                           cACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCTGCGCTGGAATCCCACCAtgtcg                                                                                                                                                >  2:95171/1‑287 (MQ=255)
                                                                                                                           cACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCca                                                                                                                                                        <  1:897434/281‑1 (MQ=255)
                                                                                                                           cACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACCAtgtg                                                                                                                                                 >  2:1673706/1‑288 (MQ=255)
                                                                                                                           cACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAAtgtg                                                                                                                                                 >  1:1659181/1‑288 (MQ=255)
                                                                                                                           cACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAAtgtg                                                                                                                                                 >  1:1184446/1‑288 (MQ=255)
                                                                                                                           cACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAAtgtg                                                                                                                                                 >  1:680907/1‑288 (MQ=255)
                                                                                                                           cACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTgg                                                                                                                                                <  2:1506642/289‑1 (MQ=255)
                                                                                                                              catgatCCGTATGCAGGCAGTCGGTTTGGATCGGCCGTTCCAGGCGCGCACCAACCCGATCCCGGGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCgg                                                                                                                                             <  2:1169140/285‑1 (MQ=255)
                                                                                                                              cAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCgg                                                                                                                                             <  1:1548419/289‑1 (MQ=255)
                                                                                                                                atatCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGGCACACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCgg                                                                                                                                             <  1:1665966/289‑1 (MQ=255)
                                                                                                                                agagccGGATGCAGGTAGTCGGTTTGGATCTGCCGTTTCCGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGtt                                                                                                                                           <  2:1303964/285‑1 (MQ=255)
                                                                                                                                 tatCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCCCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATACCGTGCAGCTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGACTGACTCGGAAGTGGACACAGACGATTTGAGTAACTTCCAGATCTGATGGCGCGCCTTCGCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGCATGAACACCCTTCCCTTCTTGCGGCCCTGGAATCCCACAATGGCGCGTTTg                                                                                                                                          >  2:119811/1‑289 (MQ=255)
                                                                                                                                   tCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGc                                                                                                                                                                                                                                           <  1:1372254/192‑1 (MQ=255)
                                                                                                                                   tCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGc                                                                                                                                                                                                                                           >  2:1372254/1‑192 (MQ=255)
                                                                                                                                       tATGCAGGCAGTCGGTTTGGATCTGACGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGCCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGCGCCAGGATGAACACCCTTCCCTTCTGGCTGCGCATGAATCCCACAATGTGGCGGTTGGGTccc                                                                                                                                    >  1:917155/1‑289 (MQ=255)
                                                                                                                                                 gTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGa                                                                                                                          >  1:1442965/1‑289 (MQ=255)
                                                                                                                                                  tCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCAt                                                                                                                                                                                                                         <  2:22867/195‑1 (MQ=255)
                                                                                                                                                   cGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGa                                                                                                                                                              >  2:555129/1‑251 (MQ=255)
                                                                                                                                                   cGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTcgcg                                                                                                                           <  1:1004251/286‑1 (MQ=255)
                                                                                                                                                   cGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGT‑GAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGaa                                                                                                                         <  1:377235/287‑1 (MQ=255)
                                                                                                                                                            tCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGc                                                                                                                <  1:1999889/288‑1 (MQ=255)
                                                                                                                                                             cTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCgg                                                                                                              <  2:680907/289‑1 (MQ=255)
                                                                                                                                                                ccGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCt                                                                                                            >  2:1903058/1‑288 (MQ=255)
                                                                                                                                                                        gACGCGCTCCAACCCGATGCCGTCGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCCCTGG‑‑CACACAACTGCTGTGCCACGATGAACACCCTTCCCTTCTCGCGGCGCTGGAATCCCACAATGTGGCGGGTGAGTACCAGTGTCGCGAAGGTTTCTGCGGCCCCTGTCgt                                                                                                    >  2:785655/1‑287 (MQ=255)
                                                                                                                                                                         aCGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGca                                                                                                   <  2:1442965/288‑1 (MQ=255)
                                                                                                                                                                                    ccagATCCCTTGGATCAACATTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTg                                                                                       <  2:1213145/286‑1 (MQ=255)
                                                                                                                                                                                         tCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTa                                                                                                                                                                                                                                                             <  1:10333/120‑1 (MQ=255)
                                                                                                                                                                                         tCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGaa                                                                                                                                                             >  1:62552/1‑214 (MQ=255)
                                                                                                                                                                                         tCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGaa                                                                                                                                                             <  2:62552/214‑1 (MQ=255)
                                                                                                                                                                                         tCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAgg                                                                                   >  1:429696/1‑288 (MQ=255)
                                                                                                                                                                                                     acacTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCCGGAATCCCACAATGTGGCGGGTGAGTACCAGTGTCGCGCAGGTTACTGCGGCTCCTGTCGCACACCCCTGGTTGCAGGTccactttgctcg                                                                      >  2:105268/1‑278 (MQ=255)
                                                                                                                                                                                                           ggCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCAc                                                                                                                                                                                                                      >  2:1291614/1‑141 (MQ=255)
                                                                                                                                                                                                           ggCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGGTGACTGGATGGcc                                                                >  1:853072/1‑289 (MQ=255)
                                                                                                                                                                                                                gtgtCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTTAGTACCAGTGTACCGAAGGTTACTCCGGCTCCTGTCGCCCACGCCTGGTCGCAGGTCCAGTCGACTCTATTTCAGAAcc                                                           >  2:1580580/1‑289 (MQ=255)
                                                                                                                                                                                                                    cTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGtt                                                        <  1:242990/288‑1 (MQ=255)
                                                                                                                                                                                                                      gATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGc                                                     <  1:476024/289‑1 (MQ=255)
                                                                                                                                                                                                                           cGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCca                                                                                                                                                        <  2:314762/185‑1 (MQ=255)
                                                                                                                                                                                                                           cGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCgg                                                                                                                                             >  1:986188/1‑196 (MQ=255)
                                                                                                                                                                                                                           cGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTa                                                >  1:1970295/1‑289 (MQ=255)
                                                                                                                                                                                                                           cGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTa                                                >  1:698336/1‑289 (MQ=255)
                                                                                                                                                                                                                           cGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGGTACTGCGGCTCCTGTCGCACACCCCTGGTTTCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCttgt                                                >  2:1922245/1‑287 (MQ=255)
                                                                                                                                                                                                                             tGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTg                                                                                                        <  2:585247/231‑1 (MQ=255)
                                                                                                                                                                                                                               cAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGCAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTATTCa                                            >  1:566819/1‑289 (MQ=255)
                                                                                                                                                                                                                                      cTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTATTCAGCCgggg                                     >  1:1932570/1‑289 (MQ=255)
                                                                                                                                                                                                                                       tCCGCAGGAAGTGGAAGTCAGTTCTTATCCGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGGGGCTCCTGTCGCCCACGCCTCGTTCCAGGTCAAGTTGGATGGATTTCCGAACCGTTAGCCTCTATTTAGGCcgggt                                    >  2:748369/1‑288 (MQ=255)
                                                                                                                                                                                                                                              gaagtggaagtCAGTTCTTATCCGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTCACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTGCTGGCGGCGCTGGAATCCCACAACGTGGCGGTTGCGTACCAGTCTCGCGAAGGGCACTGCGCCTCCTGTCGCCCCCGCCCGGGTGCAGGTCAAGTTGACTGCATTGCCGGACCGTTAGCCTTTATTCAGCCCGGGGTAAgttt                             >  2:1363234/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   ggaagtCAGTTCTTGTCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTATTCAGCCGGGGGAAATTTTGcc                          <  2:195988/287‑1 (MQ=255)
                                                                                                                                                                                                                                                          aGTTCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTATTCAGCCGGGGGAAATTTTGCCCTgttgtt                  >  1:832913/1‑288 (MQ=255)
                                                                                                                                                                                                                                                            ttCTTATCTGGTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTATTCAGCCGGGGGAAATTTTGCCCTGTTGTTGcc               >  2:878705/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             tCTTATCGGGTCGGGAAGATTGACTAGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTATTCAGCCGGGGGAAATTTTGCCCTGTTGTTGc                <  2:1184446/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                      gTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTATTCAGCCGGGGGAAATTTTGCCCTGTTGTTGCCGGGCAAAAgg     >  1:1760045/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                      gTCGGGCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCGTTAGTAAGCCTGGGGAAATTTTGCCCGGTTGTTGCCGGGCGAAAgg     >  2:68752/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                         gggCAGATTGACTCGGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGACGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTACTCAGCCGTGGGAAATTTTGCCCTGTTGTTGCCGGGCAAAAgtgca  >  2:1337739/1‑285 (MQ=255)
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                    
GGAGTGCTATGACCTGTTTGTTCAGGCAGCTCAACAGGAGAAAGACTGGGCGGATTATCTGTTCCGCGACGGTAGCATGATTGGTCTGAATAAAGACATTCTCTGCCAGTACGTTGAATACATCACCAATATCCGTATGCAGGCAGTCGGTTTGGATCTGCCGTTCCAGACGCGCTCCAACCCGATCCCGTGGATCAACACTTGGCTGGTGTCTGATAACGTGCAGGTTGCTCCGCAGGAAGTGGAAGTCAGTTCTTATCTGGTCGGGCAGATTGACAGCGAAGTGGACACCGACGATTTGAGTAACTTCCAGCTCTGATGGCCCGCGTTACCCTGCGCATCACTGG‑‑CACACAACTGCTGTGCCAGGATGAACACCCTTCCCTTCTGGCGGCGCTGGAATCCCACAATGTGGCGGTTGAGTACCAGTGTCGCGAAGGTTACTGCGGCTCCTGTCGCACACGCCTGGTTGCAGGTCAAGTTGACTGGATTGCCGAACCGTTAGCCTTTATTCAGCCGGGGGAAATTTTGCCCTGTTGTTGCCGGGCAAAAGGCGA  >  CP042583/1919455‑1920008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A