Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 794,435 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583794,4350GC99.3% 689.3 / NA 297intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (133/160);  minor base T (2/0);  total (136/161)
Fisher's exact test for biased strand distribution p-value = 2.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP042583794,4360CG99.3% 696.2 / NA 297intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/0);  new base G (134/160);  total (136/161)
Fisher's exact test for biased strand distribution p-value = 2.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01
*CP042583794,4370TA99.3% 693.4 / ‑5.9 297intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  major base A (133/160);  minor base G (2/0);  total (136/161)
Fisher's exact test for biased strand distribution p-value = 2.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 297 total aligned reads displayed.

TGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGACTCTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCGCTAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGATCCACCTTGTTGATATGATCAAAAATGATCTCAGT  >  CP042583/794155‑794713
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                    
  tAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTCTCGCGCAGACGAACGCCCGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGCTTTTTTCCGCGGGGAAACCGTCACGGCGGGGAATTAGATGCAATTCCGGAGCGATgg                                                                                                                                                                                                                                                                              >  2:2460076/1‑288 (MQ=255)
  tAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGt                                                                                                                                                                                                                                                                              >  1:1767407/1‑289 (MQ=255)
  tAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTGTCCGCTCGGAAACCGTCACGGCGGTGACTTAGATGCCCTTCCGAAGCGATGt                                                                                                                                                                                                                                                                              >  2:1157767/1‑289 (MQ=255)
  aaGCGGTTTTCCACTTCCAGCTGCCAGTGGGAGATCGCAGTATGCGGGCGGTGACAGAAAGCAACAAACAGACCGGAAACGTCGAGTGAGTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGATACCCAGTTGCGCGCCGGTCACTTCTGCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGt                                                                                                                                                                                                                                                                              <  2:1425551/288‑1 (MQ=255)
   aGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGt                                                                                                                                                                                                                                                                              <  1:570563/288‑1 (MQ=255)
    gCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGt                                                                                                                                                                                                                                                                              >  1:1280268/1‑287 (MQ=255)
    gCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTa                                                                                                                                                                                                                                                                            >  2:112523/1‑289 (MQ=255)
      cGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTa                                                                                                                                                                                                                                                                            <  1:2440283/287‑1 (MQ=255)
                     gCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGcc                                                                                                                                                                                                                                                             >  2:871972/1‑287 (MQ=255)
                                  aaTCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTa                                                                                                                                                                                                                                              <  2:1854903/289‑1 (MQ=255)
                                                 gCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCATCAACCGCGGTATTGCCGCCGCCGGTg                                                                                                                                                                                                                               >  1:2041511/1‑289 (MQ=255)
                                                    gtgACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTgccgc                                                                                                                                                                                                                                       >  1:2636908/1‑278 (MQ=255)
                                                    gtgACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTgccgc                                                                                                                                                                                                                                       <  2:2636908/278‑1 (MQ=255)
                                                      gACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGGGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACTGCGGTGAATCAGATGCACTTCCGCAGCGATGTTAGACAGATACAGCGCCTCCTCAACCGCGGGATTGCCGCCGCCCAGGACCg                                                                                                                                                                                                                           >  2:2214293/1‑288 (MQ=255)
                                                       aCCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCa                                                                                                                                                                                                                         >  1:1364094/1‑289 (MQ=255)
                                                           aTAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACtt                                                                                                                                                                                                                     >  2:1698053/1‑289 (MQ=255)
                                                                 acaaacaGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAgcg                                                                                                                                                                                                                                                               >  1:1707506/1‑241 (MQ=255)
                                                                 acaaacaGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGt                                                                                                                                                                                                               <  1:1157767/289‑1 (MQ=255)
                                                                  caaacaGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGtt                                                                                                                                                                                                              >  1:2337913/1‑289 (MQ=255)
                                                                         aCCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATag                                                                                                                                                                                                       >  1:290335/1‑289 (MQ=255)
                                                                         aCCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATag                                                                                                                                                                                                       >  1:700820/1‑289 (MQ=255)
                                                                          ccGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGa                                                                                                                                                                                                          <  1:1020269/285‑1 (MQ=255)
                                                                               actggctaggaactcGATGTTATCTCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGaaa                                                                                                                                                                                                 <  2:1920631/277‑1 (MQ=255)
                                                                               aaCGTCGAGTGAGTCGATGTTCTCGCTGTTTTGCGTTTCGGGCAGACGAACGCCAGTGACACCCATTTGTTCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGaaa                                                                                                                                                                                                 <  2:1276544/289‑1 (MQ=255)
                                                                                   tcgagtgactcGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCg                                                                                                                                                                                              >  1:2574018/9‑288 (MQ=255)
                                                                                     gagtgactcGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTc                                                                                                                                                                                            >  1:1476187/7‑288 (MQ=255)
                                                                                     gagtgactcGATGTTATCGCTGTTTTGCGTATCGCGCAGACAAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCg                                                                                                                                                                                           <  1:2709027/283‑1 (MQ=255)
                                                                                            tcGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGc                                                                                                                                                                                                                          >  1:469194/1‑251 (MQ=255)
                                                                                              gATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGca                                                                                                                                                                                  <  2:2265972/289‑1 (MQ=255)
                                                                                               tggTTATCGCTGTTTTGCGTATCGCGCAGACTAACGCCAGTGACACCCATTTGATCGACGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGca                                                                                                                                                                                  <  2:1981291/286‑1 (MQ=255)
                                                                                                    aTCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAGTCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTACCAGGTTTCACAAGCa                                                                                                                                                                            >  2:1545453/1‑289 (MQ=255)
                                                                                                    aTCGCTGTTTTGCGTATCGCGAAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGaaa                                                                                                                                                                                                 <  2:2305509/268‑1 (MQ=255)
                                                                                                     tCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGca                                                                                                                                                                                  >  1:1229675/1‑282 (MQ=255)
                                                                                                      cGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGa                                                                                                                                                                          <  1:1951164/289‑1 (MQ=255)
                                                                                                          gTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGt                                                                                                                                                                                                               <  2:1046443/248‑1 (MQ=255)
                                                                                                          gTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGCTAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAAc                                                                                                                                                                       >  2:1713745/1‑288 (MQ=255)
                                                                                                          gTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCCCCTCTTCAACCGCGGTATTGCCGCCGCCGATTCCCGCAACTTTCTGGGTTCGATAGAACAATCCCTCGCCGGTGTCACAAgaacaaca                                                                                                                                                                       >  2:2097746/1‑281 (MQ=255)
                                                                                                           ttttGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACcgc                                                                                                                                                                                                                                                  <  2:577779/212‑1 (MQ=255)
                                                                                                             ttGCGTCTCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCATCGCAGGTTGCACAAGCAGAAACCCCa                                                                                                                                                                   <  2:1499319/289‑1 (MQ=255)
                                                                                                             ttGCGTATCGCGCAGACGGACGCCAGTGACCCCCATTTGTTCGCCGCGCACTTCTTCCAGCGTACGGTGTGTGTGCAGAATGTTTTTGCCGTTCTCCACTTTAGCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCa                                                                                                                                                                   <  2:25010/289‑1 (MQ=255)
                                                                                                             ttGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCAGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAAcccc                                                                                                                                                                    >  1:2550345/1‑288 (MQ=255)
                                                                                                              tGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCAc                                                                                                                                                                  <  1:1909300/289‑1 (MQ=255)
                                                                                                              tGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCAc                                                                                                                                                                  >  2:2077522/1‑289 (MQ=255)
                                                                                                              tGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCAc                                                                                                                                                                  <  2:1640685/289‑1 (MQ=255)
                                                                                                                 gTATCGCGCGGACGAACGCCAGTGACACCCAGTTGATCTCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATAAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACgg                                                                                                                                                                <  2:297352/288‑1 (MQ=255)
                                                                                                                 gTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACgg                                                                                                                                                                <  1:871972/288‑1 (MQ=255)
                                                                                                                     cgcgCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGt                                                                                                                                                                                                                                                                              <  1:1005074/174‑1 (MQ=255)
                                                                                                                         cAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTaaa                                                                                                                                                        <  2:137784/288‑1 (MQ=255)
                                                                                                                             cGAACGCCAGTGCCACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGctt                                                                                                                                                   <  2:836630/289‑1 (MQ=255)
                                                                                                                              gAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGct                                                                                                                                                    >  1:2738817/1‑287 (MQ=255)
                                                                                                                                        gACACCCATTTGTTCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAggg                                                                                                                                         <  2:28202/288‑1 (MQ=255)
                                                                                                                                            cccATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGt                                                                                                                                                                                                               >  1:411909/1‑214 (MQ=255)
                                                                                                                                            cccATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAgg                                                                                                                                     >  1:349392/1‑288 (MQ=255)
                                                                                                                                                     tCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGc                                                                                                                           >  1:854396/1‑289 (MQ=255)
                                                                                                                                                     tCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTGAACGGCTTCTTCAGAGGGCAGGCCgagctggc                                                                                                                           >  2:159183/1‑284 (MQ=255)
                                                                                                                                                           gTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAg                                                                                                                     >  1:159422/1‑289 (MQ=255)
                                                                                                                                                                ttcttcCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGc                                                                                                                 >  1:1526465/1‑288 (MQ=255)
                                                                                                                                                                  cttcCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTcc                                                                                                              <  1:1818440/289‑1 (MQ=255)
                                                                                                                                                                    tcCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCgg                                                                                                            <  1:1866483/289‑1 (MQ=255)
                                                                                                                                                                        gCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGc                                                                                                        >  1:20824/1‑289 (MQ=255)
                                                                                                                                                                          gTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAg                                                                                                                                                                              <  1:1934481/217‑1 (MQ=255)
                                                                                                                                                                          gTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCAc                                                                                                                                                                  <  2:780298/229‑1 (MQ=255)
                                                                                                                                                                          gTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCAc                                                                                                                                                                  >  1:780298/1‑229 (MQ=255)
                                                                                                                                                                             cGGTTGGTATGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTaaa                                                                                                                                                        <  1:24856/236‑1 (MQ=255)
                                                                                                                                                                              ggTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCAc                                                                                                                                                                  >  1:1091899/1‑225 (MQ=255)
                                                                                                                                                                                 tGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAg                                                                                               <  2:1804455/289‑1 (MQ=255)
                                                                                                                                                                                   gtgtGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCCCCGGTGGCAATAATccag                                                                                              >  2:2560339/1‑285 (MQ=255)
                                                                                                                                                                                        cAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAg                                                                                                                     >  1:2271232/1‑260 (MQ=255)
                                                                                                                                                                                        cAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTc                                                                                         >  1:547608/1‑288 (MQ=255)
                                                                                                                                                                                            atgatgTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCaa                                                                                     <  1:2152805/288‑1 (MQ=255)
                                                                                                                                                                                             tgatgTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAgg                                                                                                                                     >  1:2669580/1‑239 (MQ=255)
                                                                                                                                                                                             tgatgTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAgg                                                                                                                                     <  2:2669580/239‑1 (MQ=255)
                                                                                                                                                                                                   tGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTAtt                                                                              <  1:1128171/288‑1 (MQ=255)
                                                                                                                                                                                                    gCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCg                                                                            <  2:258000/289‑1 (MQ=255)
                                                                                                                                                                                                          ctcCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGa                                                                                                                                                                          <  1:761531/189‑1 (MQ=255)
                                                                                                                                                                                                          ctcCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCTGTTa                                                                      >  1:2234608/1‑289 (MQ=255)
                                                                                                                                                                                                          ctcCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTa                                                                      >  2:754153/1‑289 (MQ=255)
                                                                                                                                                                                                          ctcCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTa                                                                      >  1:935959/1‑289 (MQ=255)
                                                                                                                                                                                                          ctcCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCCCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGtga                                                                      >  1:579306/1‑287 (MQ=255)
                                                                                                                                                                                                               cTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGcc                                                                 >  2:1946424/1‑289 (MQ=255)
                                                                                                                                                                                                                  tATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGAt                                                                                                                                                                                                         >  2:477393/1‑150 (MQ=255)
                                                                                                                                                                                                                  tATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCa                                                                                                                                                                   >  2:1302381/1‑188 (MQ=255)
                                                                                                                                                                                                                    tCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGCAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCCGAGGGCAGGCCGAGTTAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGCATTCGCCGTTATCGCCATTCa                                                            >  2:2710917/1‑289 (MQ=255)
                                                                                                                                                                                                                     ccATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCgaga                                                                                                                               >  2:1235273/1‑221 (MQ=255)
                                                                                                                                                                                                                          aGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAACACCCACGGCCTTGACAGGCTTCCTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCGCCGGTGGCAATCATCAGCGCGTCTCAAGTGTATTCTCTGGTATCGCCATTCAGtcgga                                                      >  2:444630/1‑289 (MQ=255)
                                                                                                                                                                                                                             cgcTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGacgga                                                      <  1:1691088/286‑1 (MQ=255)
                                                                                                                                                                                                                              gcTTAATGAGGATTTTGTCCGCGCTGCAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGTTGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGacggaacgg                                                  <  1:1326096/289‑1 (MQ=255)
                                                                                                                                                                                                                                   aTGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGt                                             >  2:394492/1‑289 (MQ=255)
                                                                                                                                                                                                                                      aGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGc                                                                                                                                                     >  2:193475/1‑182 (MQ=255)
                                                                                                                                                                                                                                       gggttttttCCGCGCGGAGACCGCAACGGCGGTGAATCCGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGtttg                                          <  2:1364094/285‑2 (MQ=255)
                                                                                                                                                                                                                                          ttttttCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCg                                                                                                                                  >  2:2515361/1‑197 (MQ=255)
                                                                                                                                                                                                                                          ttttttCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCg                                                                                                                                  <  1:2515361/197‑1 (MQ=255)
                                                                                                                                                                                                                                            ttttCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGAt                                    <  2:700820/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 cgcgcgGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGATCCAcc                               <  2:935959/289‑1 (MQ=255)
                                                                                                                                                                                                                                                    gcgGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGAGCCAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGATCCACCttg                            <  2:1777329/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         acacgtgaaggaagTGAATCAAATGCACTACCGAAGGTATGTTATAGAGATACAGCGTCTATTCATGCGTGGTATGGGCACCGCCGATGAACGCAACTTTCTGGTTGCGAGAGAAGAAACCGTCGCAGGTTGAACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGGGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGATCCACCTTTTTGat                       <  2:1768024/276‑1 (MQ=255)
                                                                                                                                                                                                                                                         aaCCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGATCCACCTTGTTGat                       <  1:2704737/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          accggtccggcggGGAGTCAGATGCACTTCCGTAGAGGGGTGTGACAGGTACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCTCAACTTTCTGGTTGCGATAGAAGAAGCCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTGTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGATCCACCTTGTTGata                      <  2:349392/282‑1 (MQ=255)
                                                                                                                                                                                                                                                               cACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGAAAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGATCCACCTTGTTGATATGAt                  <  1:658269/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                          aTCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGATCCACCTTGTTGATATGATCAAAAATGAtct      <  1:1402398/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                    
TGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGACTCTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCGCTAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAACCGTCGCAGGTTGCACAAGCAGAAACCCCACGGCCTTTAAAGGCTTCTTCAGAGGGCAGGCCGAGATAGCGTGCAGAAGCTCCGGTGGCAATAATCAGCGCGTCGCAAGTGTATTCGCCGTTATCGCCATTCAGACGGAACGGACGGTTTTGCAGATCCACCTTGTTGATATGATCAAAAATGATCTCAGT  >  CP042583/794155‑794713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A