Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,949,345 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,949,3450GC98.2% 510.8 / NA 224intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/4);  new base C (108/112);  total (108/116)
Fisher's exact test for biased strand distribution p-value = 1.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,949,3460CG99.1% 514.9 / NA 224intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/2);  new base G (108/110);  total (108/116)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,949,3470TA99.1% 524.4 / NA 224intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (108/113);  minor base G (0/2);  total (108/116)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 224 total aligned reads displayed.

CGTTTTGCGGCATCAGATAGAAACGCTCACGCTCGCTTTGCGGCGTTGGCAACAGGCTGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTGCTAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGGCTAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCAATGTCATCAACA  >  CP042583/1949065‑1949624
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
cGTTTTGCGGCATCAGATAGAAACGCTCACGCTCGCTTTGCGGCGTTGGCAACAGCGAGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAgcg‑c                                                                                                                                                                                                                                                                                  >  1:1546222/1‑289 (MQ=255)
           accaggtgaaaccgctcacgctgGTTTTGCGGCGTGGGAAACAGCGAGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGa                                                                                                                                                                                                                                                                        <  2:1576754/276‑1 (MQ=255)
            tCAGATAGAAACGCTCACGCTCGCTTTGCGGCGTTGGCAACAGCGAGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACg                                                                                                                                                                                                                                                                      <  1:444542/289‑1 (MQ=255)
            tCAGATAGAAACGCTCACGCTCGCTTTGCGGCGTTGGCAACAGCGAGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACg                                                                                                                                                                                                                                                                      <  1:697737/289‑1 (MQ=255)
                        gctcacgctcGCTTTGCGGCGTTGGCAACAGCGAGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAg                                                                                                                                                                                                                                                             >  1:2064610/1‑286 (MQ=255)
                         ctcacgctcGCTTTGCGGCGTTGGCAACAGCGAGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCCATCAGACGTACCACCAg                                                                                                                                                                                                                                                             >  1:1385069/1‑285 (MQ=255)
                         ctcacgctcGCTTTGCGGCGTTGGCAACAGCGAGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCCCCAg                                                                                                                                                                                                                                                             >  2:1436539/1‑285 (MQ=255)
                                        cggcgTTGGCAACAGCGAGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTCCCAACAAACAAt                                                                                                                                                                                                                                          >  1:777297/1‑289 (MQ=255)
                                         ggcgTTGGCAACAGCGAGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAAt                                                                                                                                                                                                                                          <  1:412922/288‑1 (MQ=255)
                                                                               gttCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATgcgc                                                                                                                                                                                                   >  1:1681822/1‑288 (MQ=255)
                                                                                  caccacAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑Catcaa                                                                                                                                                                                                                                                                             >  1:2152954/1‑212 (MQ=255)
                                                                                  caccacAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑Catcaa                                                                                                                                                                                                                                                                             <  2:2152954/212‑1 (MQ=255)
                                                                                  caccacAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGcccc                                                                                                                                                                                                                                    <  2:1782900/253‑1 (MQ=255)
                                                                                  caccacAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGcccc                                                                                                                                                                                                                                    >  1:1782900/1‑253 (MQ=255)
                                                                                  caccacAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGt                                                                                                                                                                                               >  1:2366323/1‑289 (MQ=255)
                                                                                     cacaATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACCCCGGGTAACCTGCCGCAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCCGCTACCAACAAACAATTGCCCCTGT‑TCAGGCAGCAAGTCGCAGATCCGATGCGCCAATTg                                                                                                                                                                                             >  2:2582401/1‑288 (MQ=255)
                                                                                     cacaATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTAACAAACAACAATTGCCCCTGT‑TCAGGCAGGTAGTCGCAGAAGCTATGCGCCAGTTgc                                                                                                                                                                                            >  1:1255626/1‑289 (MQ=255)
                                                                                      cgggtacagaCCCGCGGCGCAGAAACCGGACGCACTAACCGCAGGGCGTGGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCTTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTgcg                                                                                                                                                                                           <  2:1822841/280‑1 (MQ=255)
                                                                                          ttAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACg                                                                                                                                                                                                                                                                      <  2:680263/211‑1 (MQ=255)
                                                                                             aTACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGc                                                                                                                                                                                     >  1:261983/1‑288 (MQ=255)
                                                                                               aCCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCaa                                                                                                                                                                                  <  1:2158772/289‑1 (MQ=255)
                                                                                               aCCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCaa                                                                                                                                                                                  >  1:11815/1‑289 (MQ=255)
                                                                                               aCCAGCAGCGCAGAAACCGGCAGAAATAACGCCAGGGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATTGACAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCaa                                                                                                                                                                                  <  2:1165639/289‑1 (MQ=255)
                                                                                                  aGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTAc                                                                                                                                                                                                                                                     >  2:568399/1‑220 (MQ=255)
                                                                                                   gcggcgCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAgatgcga                                                                                                                                                                                                        >  2:1929850/1‑263 (MQ=255)
                                                                                                   gcggcgCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCACCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGc                                                                                                                                                                              >  1:1989679/1‑289 (MQ=255)
                                                                                                    cggcgCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCa                                                                                                                                                                             >  1:2506291/1‑289 (MQ=255)
                                                                                                    cggcgCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCa                                                                                                                                                                             >  1:2464007/1‑289 (MQ=255)
                                                                                                    cggcgCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGAGCCAGTTGCGCTTCGCCAAACGCa                                                                                                                                                                             >  1:1724357/1‑289 (MQ=255)
                                                                                                    cggagCAGAAACCTGACGCAATAACGCCAGCGTGTTGAGATCGTAAAGTGCGGAGAGATCGCACACAATCGCCAGCGTAGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCTCGTCGAAACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGACGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACAACCAGGCTGTTAACAACAAACAATCTCACCTGT‑TCAGGCAGATAGTCGCAgat                                                                                                                                                                                                            >  1:1779296/1‑258 (MQ=255)
                                                                                                            aaaCCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGt                                                                                                                                                                                                                                                        <  1:1849843/207‑1 (MQ=255)
                                                                                                             aaCCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCAcgg                                                                                                                                                                       <  1:1045341/286‑1 (MQ=255)
                                                                                                             aaCCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCAcgg                                                                                                                                                                       <  1:121407/286‑1 (MQ=255)
                                                                                                                    cGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATa                                                                                                                                                              <  1:2015647/288‑1 (MQ=255)
                                                                                                                       aaTAACGCCAGCGCGTTGGGATCGTAAGGTGCGGAGGGATCGCCCACAATCGCCAGCGTCGGTTGGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCg                                                                                                                                                          <  2:1385069/289‑1 (MQ=255)
                                                                                                                        aTAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCg                                                                                                                                                          >  1:718849/1‑288 (MQ=255)
                                                                                                                        aTAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCg                                                                                                                                                          >  2:2201439/1‑288 (MQ=255)
                                                                                                                             gCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCAAAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCGGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCa                                                                                                                                                    <  1:1107372/289‑1 (MQ=255)
                                                                                                                                     gTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGt                                                                                                                                            >  1:986617/1‑289 (MQ=255)
                                                                                                                                       tGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACg                                                                                                                                                                                                                                                                      <  2:201064/166‑1 (MQ=255)
                                                                                                                                               tAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAgg                                                                                                                                                                                                                                                            >  2:1681509/1‑168 (MQ=255)
                                                                                                                                               tAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGgc                                                                                                                                  >  2:267749/1‑289 (MQ=255)
                                                                                                                                               tAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGgc                                                                                                                                  >  1:653750/1‑289 (MQ=255)
                                                                                                                                                 aaGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGcc                                                                                                                                                                                                                                      >  1:1069849/1‑188 (MQ=255)
                                                                                                                                                   gTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑Catcaatc                                                                                                                                                                                                                                                                           <  1:11417/149‑1 (MQ=255)
                                                                                                                                                      cGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGa                                                                                                                            <  1:2201439/288‑1 (MQ=255)
                                                                                                                                                      cGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGAt                                                                                                                           >  1:1210089/1‑289 (MQ=255)
                                                                                                                                                      cGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGAt                                                                                                                           >  2:2032495/1‑289 (MQ=255)
                                                                                                                                                       ggAGAGATCGGCCACCATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCAACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGAt                                                                                                                           <  2:2543635/288‑1 (MQ=255)
                                                                                                                                                            gaTCGCCCACAGTCGACAGCGTCGGTTCGCCGATTGCCCGCTGAACGCCGGCGGCGGTAGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCaa                                                                                                                      <  2:2389260/288‑1 (MQ=255)
                                                                                                                                                             aTCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGt                                                                                                                                                                                                                   >  1:838827/1‑194 (MQ=255)
                                                                                                                                                              tCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGTTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACg                                                                                                                    >  2:1089368/1‑288 (MQ=255)
                                                                                                                                                              tCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGcc                                                                                                                                                                                                                                      <  2:1542209/175‑1 (MQ=255)
                                                                                                                                                              tCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACg                                                                                                                    >  1:1428286/1‑288 (MQ=255)
                                                                                                                                                                gCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCCGGCGCGGGGTTTCaaagac                                                                                                                  >  1:735654/1‑284 (MQ=255)
                                                                                                                                                                       aTCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGTCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCCTTGCCTGTTCCGCCAGGCGCGGGATTTCAAGGCACCAgg                                                                                                             >  1:2148539/1‑286 (MQ=255)
                                                                                                                                                                               cGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CACCAATCAGACg                                                                                                                                                                                                                                                                      <  2:1456440/126‑1 (MQ=255)
                                                                                                                                                                               cGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CACCAATCAGACg                                                                                                                                                                                                                                                                      >  1:1456440/1‑126 (MQ=255)
                                                                                                                                                                                 tCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCCGTCGAAAGCAGCCCGTCGGTACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAAGCAGACGTACCCCCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGttttt                                                                                                 <  2:947376/288‑1 (MQ=255)
                                                                                                                                                                                      tgggcGCATGCCGGCGGAGCGCCGGCGGCGGTCGAAGGCAGCCCGTCGATACCGCTGGGCCCGCGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGGCGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGcc                                                                                            <  2:225545/284‑1 (MQ=255)
                                                                                                                                                                                      tgcccggctccccGCTGACGGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGcc                                                                                            <  2:879135/278‑1 (MQ=255)
                                                                                                                                                                                                   gCTGAACGCCGGCGGCGGTCGAAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATa                                                                                                                                                              >  1:253566/1‑209 (MQ=255)
                                                                                                                                                                                                                               cccGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATg                                                                                       <  2:285703/252‑1 (MQ=255)
                                                                                                                                                                                                                               cccGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATg                                                                                       >  1:285703/1‑252 (MQ=255)
                                                                                                                                                                                                                               cccGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCg                                                   >  1:2113598/1‑288 (MQ=255)
                                                                                                                                                                                                                                ccctCGATACCGCGGGCCCCACGGTTGCGGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGCCGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGAc                                                 <  2:1210089/286‑1 (MQ=255)
                                                                                                                                                                                                                                ccGTCGATCCCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGAc                                                 <  1:2667142/289‑1 (MQ=255)
                                                                                                                                                                                                                                       tACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCcgcg                                          >  1:927486/1‑289 (MQ=255)
                                                                                                                                                                                                                                           gCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATgg                                      <  2:608978/289‑1 (MQ=255)
                                                                                                                                                                                                                                            cTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGAc                                                 >  2:31785/1‑277 (MQ=255)
                                                                                                                                                                                                                                            cTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGAc                                                 <  1:31785/277‑1 (MQ=255)
                                                                                                                                                                                                                                            cTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGgt                                     >  1:2346648/1‑289 (MQ=255)
                                                                                                                                                                                                                                             tGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCg                                                                                                      >  1:58720/1‑223 (MQ=255)
                                                                                                                                                                                                                                             tGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATAtt                                                               <  1:1916855/262‑1 (MQ=255)
                                                                                                                                                                                                                                             tGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATAtt                                                               >  2:1916855/1‑262 (MQ=255)
                                                                                                                                                                                                                                                      ggTTGCTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGgcg                                                                                                                                 <  2:376010/187‑1 (MQ=255)
                                                                                                                                                                                                                                                           cTGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGt                                               <  1:109397/264‑1 (MQ=255)
                                                                                                                                                                                                                                                            tGTACACCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCg                     <  2:81509/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                cacCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTTGCAATTAAGCGACGTCCGCGATGGTGTGCCGTGGCAAGTCGCCCt                 >  2:688742/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                cacCGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCt                 >  1:1674427/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  ccGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGCCGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATTACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCATGCGCGGGATTTCAACGCACCAGGGCTGGCGTCTTTCTGCCGGATGCCGCCCCCGCCCGTCGGCAATATTGGCAATTAAGCAACGTCCGCGCTGGGGTGCCGGCGCAAGTCGCCCtt                >  2:342398/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                  ccGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTTCGCGATGGTGTGCCGTATCAAGTCGCCCTTc               >  1:657000/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  ccGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCCAGTCGCCCTTc               >  1:681158/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   cggggcaCCTACCGGAAGTTGCTAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAAAAACCAATGGCCCCTGT‑GCAGGCAGGTAGTCGCAGAGGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAGCCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCa              <  2:2464007/283‑1 (MQ=255)
                                                                                                                                                                                                                                                                   cGGGTGACCGGCGTGAAGGTGGGAAAGCG‑CAGGAGACAGACGTCCGGCGTGGCTGTTGCCAAC‑AACACGTGGCCCCGTGTCAGGCGGAAGGTCGCAGATGCGGTGCGCCAGTTGCGTTTCGCCAAAGGACTCGCGGCGGGCAATAACCGCCTGCATGGCCTGTTCCGCCAGGCGCGGGATTTCAGCGCACCAGGGCTGGCGTGTTTCTGGCGGGTGCAGCTCCGGGCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCa              <  2:2329862/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   cGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCGAGTCGCCCTTCa              <  2:2115771/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   cGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCa              <  1:2408345/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   cGGGTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCa              >  1:159709/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     ggTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGcccc                                                                                                                                                                                                                                    <  1:553963/74‑1 (MQ=255)
                                                                                                                                                                                                                                                                     ggTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTccagcca                                                                           >  2:1115668/1‑226 (MQ=255)
                                                                                                                                                                                                                                                                     ggTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGCCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCCATGCGCCAGTTGCGCTTCGCCAAACCCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCCGGCGCGGGATTCCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCCATACTGGCAATTAAGCGACTTCCCGCCTGCTGTTCCGCATCACGTCGCCCTTCact            >  2:2181361/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                      gTAACCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCAATg           >  2:2373115/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                        aaCCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCcg                                            <  2:1215894/254‑1 (MQ=255)
                                                                                                                                                                                                                                                                        aaCCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCg                     <  2:1653927/277‑1 (MQ=255)
                                                                                                                                                                                                                                                                        aaCCTGCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCAATGtc         >  1:1082260/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                        aaCCCGCCGGAAGTT‑GCGAAACGCCAACAATCGGACGTACAACCGGGCTGTTCCCACCAAACGATGCCCCCTGG‑TCGGGCCGATGGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAGCGCAGCACGGCGGGCAATACCCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCAATGtc         <  2:7474/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             gCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCAcgg                                                                                                                                                                       >  1:2092412/1‑126 (MQ=255)
                                                                                                                                                                                                                                                                             gCCGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCCTCAGCCAGTCGGCAAAATTGGCAATTAAGCCACGTCCGCGATGGTGTGCCGGAGCAAGTCGCCCTTCAATGTCCTcaa    >  1:428305/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                               cGGAAGTTGCGAAAGGG‑CATAAATCAGAAGTACCCCCGGGCTGTTACCCACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCAATGTCATcaaca  <  2:2623250/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                               cGGAAGTTGCGAAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTgg                                                             <  1:1610476/230‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
CGTTTTGCGGCATCAGATAGAAACGCTCACGCTCGCTTTGCGGCGTTGGCAACAGGCTGAAAATTTGCCCGCCGTTGTTGTTCACCACAATTAATACCAGCGGCGCAGAAACCTGACGCAATAACGCCAGCGCGTTGAGATCGTAAAGTGCGGAGAGATCGCCCACAATCGCCAGCGTCGGTTTGCCGCTTGCCCGCTGAACGCCGGCGGCGGTGCTAAGCAGCCCGTCGATACCGCTGGCCCCACGGTTGCTGTACACCGGGTAACCTGCCGGAAGTTGGCTAAGCG‑CATCAATCAGACGTACCACCAGGCTGTTACCAACAAACAATTGCCCCTGT‑TCAGGCAGATAGTCGCAGATGCGATGCGCCAGTTGCGCTTCGCCAAACGCATCACGGCGGGCAATAACCGCCTGCATTGCCTGTTCCGCCAGGCGCGGGATTTCAACGCACCAGGGCTGGCGTTTTTCTGCCGGATGCAGCTCCAGCCAGTCGGCAATATTGGCAATTAAGCGACGTCCGCGATGGTGTGCCGGATCAAGTCGCCCTTCAATGTCATCAACA  >  CP042583/1949065‑1949624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A