Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
70 |
77.5 |
1840812 |
85.2% |
1568371 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,489,862 |
A→G |
21.7% |
S107P (TCC→CCC) |
argD ← |
bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,489,862 | 0 | A | G | 21.7%
| 129.4
/ 3.6
| 61 | S107P (TCC→CCC) | argD | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base A (13/32); new base G (13/2); total (27/34) |
| Fisher's exact test for biased strand distribution p-value = 1.51e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCC‑TTGCCTTGCTGATCCCAGATTCGGCTGCCCT > NC_000913/3489625‑3490086
|
gATCATCCATCACCGCTTTCCATGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAg < 1:515716/239‑1 (MQ=255)
atccatcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCCTTTGCTT‑TC‑CGGCCGGAGtcat > 1:278595/1‑236 (MQ=255)
ccatcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTTGTTAGCTT‑CC‑GTGCCGGAGTT‑CCTa > 1:498884/1‑239 (MQ=255)
ccatcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTCGTTAGCTT‑CC‑GTGCCGGGGGT‑CATa > 1:45986/1‑239 (MQ=255)
catcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGTCCACCCACCGAACCGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCATGCCAGTTTAAAGGCGGTTTCGTTAGGTT‑CC‑CGGCCGGaaggtagaa > 2:622752/1‑231 (MQ=255)
catcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGATT‑CC‑CGGCCGGAGTG‑CCTaa > 1:360073/1‑239 (MQ=255)
tcccccccTTTCCCTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATaaa < 2:328033/232‑1 (MQ=255)
aCCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTTGTTTTGAACGGGCTATGACGACCACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTGCGTAGATT‑CC‑ATCCCCGGGTTCCATAAac > 1:916056/1‑238 (MQ=255)
cTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GGGCCGGGGTT‑CTTAAAca‑c‑cac > 1:132972/1‑238 (MQ=255)
gCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGACCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCAACCAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAACTT‑CCGGTGCCGGGGTC‑AATAAACC‑C‑CCcggttacgg > 1:880530/1‑232 (MQ=255)
cATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTCAGTTT‑CC‑GTGCCCGAGTT‑CATAAa‑a‑c‑cacaccgttctgac > 1:118516/1‑228 (MQ=255)
agaTCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTTGTTAGCTT‑TC‑CTGCCGGGGTT‑CATAAACA‑C‑CCCCCGTTCGGCAAAcct > 1:638912/1‑237 (MQ=255)
gaTTGTTAAAGGTGACGTGGATGATGTGTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTGGGCTGCCCACCCCACGAAACGGTAAACCAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTGTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACg < 1:251518/238‑1 (MQ=255)
gTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTTGGTAACTT‑CC‑GTGCCGGGGTT‑CCTAAAAA‑C‑CCACCGTTCGGCAAACGTTgtc > 1:283433/1‑236 (MQ=255)
gTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTTGCTTCCC‑GTCCCGG‑GTT‑CCTAAAAA‑A‑CACCCGTTCGGCAAACGGTGcc > 1:785043/1‑238 (MQ=255)
aaGGGAACGGGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑At < 1:622752/239‑1 (MQ=255)
aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CCTAAAAA‑C‑CACCCGTTCGGCAAACCTTGCCTCA‑Atacgtt > 1:544857/1‑234 (MQ=255)
aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTGTCGCTTTCTT‑TC‑GGGCCCGGGTT‑TATAAACA‑CACAC‑CGTTTGGCAAACGTTTcccccaacaagt > 2:702750/1‑229 (MQ=255)
aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTTGGTAGATT‑TC‑CGGCCGGGGTT‑CATAAAAC‑C‑CACTGGGTCGGCAAACGTTGCCTCC‑ATAAGtt > 1:616463/1‑239 (MQ=255)
aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTCGTTAGCTT‑CC‑GTGCCGGAGGT‑CATAAACA‑C‑CACGCGGTCGGCAAACGTTGTCTCA‑ATCAggt > 1:543868/1‑237 (MQ=255)
aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGCTTCTTTTGCCT‑CC‑GGTCCCGGGGT‑CATAACAA‑C‑AACCCGTGTGGCCAACGGTGACTCa‑aacc > 2:126879/1‑233 (MQ=255)
cGTTGATGATGTCTGCCGGTTGCGGCCCAAAGCCGTCGGAATATTGTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTa < 1:265070/239‑1 (MQ=255)
cGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCCAACAGGCGTAATGGCGTGCCAGTTTAAAAGCGGGTTTGCTTGCTTCCC‑GTCCCGGGGTT‑‑AAAAAAA‑C‑CACGCGGTCGTCCAACGTTTGCTCACACCAGttt > 1:882237/1‑238 (MQ=255)
gTGGGTGATGTGTGCCGTTTTCGGCCCAAAGCCGGTGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTAc < 2:482279/239‑1 (MQ=255)
atgTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑TC‑GTGCCGGGGTT‑CATAAACA‑C‑AACGCGTTCGGCAAACGTTGCCTCC‑ATCCGTTTTCGccccaa > 1:131724/1‑236 (MQ=255)
ccGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑TGGCCGGAGTT‑CATAAACA‑C‑CACGCGTTTGGCAAACGTTGCCCCC‑ACCAGTTTACGCCCCACACGCac > 1:881255/1‑237 (MQ=255)
ccAACGCCGTCGGATTATTTTGGCGTCCCACCCGCCGAAAGGGTAAA‑AAGCGAGCGAACATGAAAAGCGTTATGGAAGGCAATAAGTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCAtt < 2:715732/239‑1 (MQ=255)
ccAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCAt < 1:48944/238‑1 (MQ=255)
aaGCCGTGGGAATATTTTGGGTGCCCACCCCCCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGt < 2:881255/239‑1 (MQ=255)
cccGGCGGAATTTTTTGGCCGCCCCCCCACCGAAACGGTAAA‑CAGGGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGa < 2:132972/238‑1 (MQ=255)
cggaggAATATGTTGGCTGCCCCCCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGa < 1:126879/233‑1 (MQ=255)
cGTCGGAATTTTTTGGCCGCCCACCCAACGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaa < 2:283433/238‑1 (MQ=255)
cGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaaa < 1:143149/239‑1 (MQ=255)
ggcGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaaaa < 1:279403/237‑1 (MQ=255)
gTCGGAATTTTTTGGCTGCCCACCCCCCGAAACGGTAAA‑AAGCGAGCGACCATGAAAAGGTTTAAGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaa < 2:785043/237‑1 (MQ=255)
tttttGGCCGCCCCCCCACCGAAACGGTAAA‑CAGCGAGCGACCAGGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTg < 2:544857/238‑1 (MQ=255)
ttGGCCGCCCCCCCACCGAAACGGTAAA‑CAGCGGGCGACCATGAAAGGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGata < 2:278595/239‑1 (MQ=255)
cccacccaCCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCcaca < 1:823203/239‑1 (MQ=255)
ccccccaacGAAACGGTAAG‑AAGCGATGGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCcaca < 1:369613/235‑1 (MQ=255)
aaaCGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGccc < 2:716294/239‑1 (MQ=255)
ggTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGGTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGGTATGCCCCAGAGTTTCGCCCC‑ggg > 1:223783/1‑239 (MQ=255)
gagcgaCCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGACGCAGCGCCGGGTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCTGGGGTTTTTaagc > 1:80305/1‑237 (MQ=255)
gcgaCCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAAcgcg < 1:702750/238‑1 (MQ=255)
tGAAAAGCGTTATGGAAGGCAATAATTCTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaa < 1:503054/185‑1 (MQ=255)
ggTTAGGGAAGGCAATAATTTTGGTTTTGAACGGGCTATTACGCCCACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGa < 1:284918/238‑1 (MQ=255)
ttttGGAAGGCAATAATTTTGGGTTTGAACGGGTTTTGACGCACCCAGGCGTAAGGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGAt < 2:638912/235‑1 (MQ=255)
attatTTTGGTTTTGAACGGGTTTGGGCCCACAAGGGCGTAATGGCGTGCCAGTTTAAAGGGGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACC‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGCTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCaa < 2:360073/236‑1 (MQ=255)
tgatttgtgTTTTGAACGGTCTATGACGCACCCGGGCGTACGGGGCTGCCAGTTTAAGGTCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACC‑C‑CGCGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTCCCGCCCAAGACGCCTCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCAAAc < 2:157509/231‑1 (MQ=255)
gCACCCAGGCGTATTGGGGTGACAGTTTAAAGGGTGTTTACTTAGCTT‑CC‑GGGCCGGGGTT‑CATAAACC‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGaaa < 2:45986/239‑1 (MQ=255)
cacacaGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAAt < 1:131272/239‑1 (MQ=255)
acacaGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATa < 2:442508/63‑1 (MQ=255)
acacaGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATa > 1:442508/1‑63 (MQ=255)
acacaGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTCGTTAGCTT‑CC‑GTGCCCGGGTT‑CATAAACA‑A‑CACCCGGTCCGCAAACCTTGCCTCA‑ATCAGTTTACGCCCCAGACGCAGCCACGGGTCATTGGGGAAAACGTTACTAAAATGCCACAAGGATTCGCCCT‑GGGTTTTTAAAGCGTTCACACCCCCCGGAACGGAAAGGCCCCACCCCGTACATCCAATGCCAccccccgaaac > 2:518889/1‑231 (MQ=255)
aGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGGGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGACCCCGCGCCGGGTCATTGGTGAAAACGTTACTGATATTCCACAGAGGTTCGCCCT‑GGGGTTTTAAAGCGTTCACCCACCCCGGGTGGCAAAGGCCCCACCCCCTAAATACAATGACACCCCCGCAAACGACa > 2:118276/1‑239 (MQ=255)
tAATGGCGTGCCAGTTTAAAGGCGTTTTCCTTAGGTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGGGTTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGCCGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACt < 1:652886/238‑1 (MQ=255)
gTGCCAGTTTAAAGGGGGTTTCGTTTGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CCCGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTcc‑ttgcc < 2:498884/238‑1 (MQ=255)
gCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGGTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATTCCACCCCCCGAATCGACAAAATcc‑ttgcctt > 1:715000/1‑238 (MQ=255)
gTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGACACAGCCCCGGTTCATTGGGGGAAACGTTACTGTTATGCCACAGAGTTTCGCCCT‑GGGGTTTTAACTCGATCACCCGCGCCGAGTGGGAATGGGCCCACGGCGTAACTGCAAAGCCACCCCCGCAATCGACAAACCCCTTTCCCTTCCTGACCCCacgta > 2:833067/1‑234 (MQ=255)
tgtct‑CC‑GTGCCGGGTTT‑CA‑AAACACC‑CAACCGGTCGGGAAAGGTGTCCTCA‑ATCAGTTTACGCGCAAGTAGCAGGTCCGTTTCAATGGTGAAAACGTTACTGATATGCCACAGAGGTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCC‑TTGCCTTGCTGATCCCAGATTCGGCTGCCCt < 2:916056/235‑1 (MQ=255)
aGCTT‑CC‑GTGCCGGAGTT‑CATAAACC‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCC‑TTGCCTTGCTGATCCCAGATTCGGCTGCCCt < 1:138094/239‑1 (MQ=255)
tt‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCAc < 2:16028/141‑1 (MQ=255)
tt‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCAc > 1:16028/1‑141 (MQ=255)
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GATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCC‑TTGCCTTGCTGATCCCAGATTCGGCTGCCCT > NC_000913/3489625‑3490086
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
