Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F9 I0 R1 102 135.6 2723430 97.5% 2655344 229.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,536,135 G→C 10.9% R150R (CGC→CGG)  ompR ← response regulator in two‑component regulatory system with EnvZ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,536,1350GC10.9% 258.4 / 4.4 133R150R (CGC→CGG) ompRresponse regulator in two‑component regulatory system with EnvZ
Reads supporting (aligned to +/- strand):  ref base G (43/71);  new base C (14/2);  total (60/73)
Fisher's exact test for biased strand distribution p-value = 2.24e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.27e-01

Only 100 of 135 total aligned reads displayed.

GCCCAGACCCCAGACGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGCTCT  >  NC_000913/3535898‑3536367
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                         
gCCCAGACCCCAGACGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTcg                                                                                                                                                                                                                                           >  1:745074/1‑238 (MQ=255)
     gaccccagacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGGACATTTcgtccct                                                                                                                                                                                                                                      >  2:831326/1‑233 (MQ=255)
     gaccccagacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGCACATTTCGCGCGt                                                                                                                                                                                                                                      >  1:548913/1‑238 (MQ=255)
     gaccccagacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCCCGCGt                                                                                                                                                                                                                                      >  1:447887/1‑238 (MQ=255)
       ccccagacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTAcc                                                                                                                                                                                                                                   <  2:825456/239‑1 (MQ=255)
       ccccagacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTAcc                                                                                                                                                                                                                                   <  2:36514/239‑1 (MQ=255)
           agacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGGACATTTCGCCCCTACCGAgg                                                                                                                                                                                                                               >  1:811571/1‑239 (MQ=255)
           agacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACAATTCCTGCGTACCGAgg                                                                                                                                                                                                                               >  2:912680/1‑239 (MQ=255)
              cGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑t                                                                                                                                                                                                                             <  2:596619/237‑1 (MQ=255)
                gTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCCCGGAACATTTCCCGCGTAACGAGG‑TTaat                                                                                                                                                                                                                         >  1:1010579/1‑238 (MQ=255)
                 tCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTTGCGGGACATTTCGCGCGCACCGAGG‑TTAAGt                                                                                                                                                                                                                        >  1:419354/1‑239 (MQ=255)
                  cTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑GTAAGtt                                                                                                                                                                                                                       >  1:344386/1‑239 (MQ=255)
                  cTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGGCTTCGCGGGACATTTTCCGCGGACCCCGG‑TTTAggt                                                                                                                                                                                                                       >  2:783769/1‑237 (MQ=255)
                      aTGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGaa                                                                                                                                                                                                                   <  2:493943/239‑1 (MQ=255)
                      aTGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGaa                                                                                                                                                                                                                   <  2:405512/239‑1 (MQ=255)
                           aCGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTTGCGGAACATTTCCCGCGTACCCAGG‑TTAAGTTTGAACTTa                                                                                                                                                                                                               >  1:1348460/1‑238 (MQ=255)
                           aCGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTa                                                                                                                                                                                                               >  1:156742/1‑238 (MQ=255)
                             gcgGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCg                                                                                                                                                                                                            <  1:379255/239‑1 (MQ=255)
                               ggATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGGCTTCGCGGGACCTTTTCCGCGTACCCACG‑GTAAGGTTGATCCTACCCaa                                                                                                                                                                                                          >  2:772059/1‑239 (MQ=255)
                                 aTGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTTCCGCGTACCGGGG‑TTAAGTTTGAACTTACCGAAAg                                                                                                                                                                                                        >  1:44339/1‑239 (MQ=255)
                                   gcgcTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCa                                                                                                                                                                                                      <  1:831326/239‑1 (MQ=255)
                                   gcgcTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCGCCGCTTCGCGGGAGATTTTCCGCCTACCGAGG‑CTAAGTTTAAACTTACCCCAAGcc                                                                                                                                                                                                      >  2:836315/1‑238 (MQ=255)
                                    cgcTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTTGCGCGTCCCCAGG‑TTAAGTTTGAACTTTCCGaagacaa                                                                                                                                                                                                     >  1:682800/1‑234 (MQ=255)
                                          atcgccttcCACCATGCGGCGCAGACGCGAAGTCTGCAGGTGGGTGGGGCTTCCCATTGCGGAATATTCACGACCCCGGGCAAGTTTCAGCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACGCCCCGCTGGTGAGCGGCAGCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTCCCGAAAGCATTTAcc                                                                                                                                                                                                <  2:469920/233‑1 (MQ=255)
                                                 tcCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCtt                                                                                                                                                                                         >  1:591933/1‑238 (MQ=255)
                                                 tcCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCCCGGGACATTTCGCGCGTACCGAGG‑TTAAGGTTGGAACTACAGAGAGCAATTACCACctcct                                                                                                                                                                                         >  2:1274111/1‑236 (MQ=255)
                                                   caccaTGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGGACTTACCGAAAGCAATTACCGCCTCTTca                                                                                                                                                                                       >  1:538855/1‑237 (MQ=255)
                                                        tGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGAc                                                                                                                                                                                 >  1:401991/1‑239 (MQ=255)
                                                        tGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCCCGGAACATTTTGCGCGTACCGGGG‑GTAACGTTGAACTTTCCCGAAGAAATTACCGGCTcctccttcgac                                                                                                                                                                                 >  2:1243276/1‑234 (MQ=255)
                                                               cAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTAc                                                                                                                                                                                                                                    <  2:13317/182‑1 (MQ=255)
                                                               cAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTAc                                                                                                                                                                                                                                    >  1:13317/1‑182 (MQ=255)
                                                               cAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCCCGCGTACCGAGG‑GTAAGTTTGAACTTACCGAAAGACATTAACGCCCCTTCCCGTGAGCGTgcg                                                                                                                                                                           >  2:960849/1‑238 (MQ=255)
                                                                  aCGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTg                                                                                                                                                                       >  1:451480/1‑239 (MQ=255)
                                                                              cACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCCCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGGGCGCCTGGCAgttcgttc                                                                                                                                                            >  1:929397/1‑238 (MQ=255)
                                                                              cACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCCTTGCGGAACATTTCGCGCGTAACGGGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCCCCTCTTCCTGTGACGGTGCGCCTGGCCgttcgttc                                                                                                                                                            >  1:1280459/1‑238 (MQ=255)
                                                                                   cGATGGAGCTTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTga                                                                                                                                                      <  1:1353511/239‑1 (MQ=255)
                                                                                   cGATGGAGCGTTCCATTGCGGAATATTCACGACCCCGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTCCCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGACCTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTga                                                                                                                                                      <  1:1008526/239‑1 (MQ=255)
                                                                                            gTTCCATTGCGGAATATTCCCGCCCGCGGGCAAGTTTCATCAGCTTACCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTCCCTTCAGTACCGCAAACTCCCCGCGGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACgcag                                                                                                                                              <  2:591933/238‑1 (MQ=255)
                                                                                            gTTCCATGGCGGAATATGCCCGGCCGCGGGCAAGGTTCATCAGCTTAGCGCGGGAGAGCGG‑CTCACGCGGGTGGCTGACCAGTGCCTTCAGTACCGCAACCTCCCCGCGGGTGAGCGGCATCGGCTCGTCTTCGCGAAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACgcag                                                                                                                                              <  2:779542/238‑1 (MQ=255)
                                                                                             ttCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGGTTGAACTTACCGAAAACAAATACAGCCTCTTCCTGGGACGGTGGGCCTGGCCGGTCGTTCGCCTGAGGACgccac                                                                                                                                             >  2:1344819/1‑235 (MQ=255)
                                                                                             ttCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCCCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACgcagc                                                                                                                                             >  1:672922/1‑238 (MQ=255)
                                                                                                   tGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTTGCGCCGACCGAGG‑TTAAGTTTGAAATTACCGGAAGCAATTACCGCCTCCTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCAc                                                                                                                                      >  1:779542/1‑239 (MQ=255)
                                                                                                       gAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAACCTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGa                                                                                                                                   <  1:526640/238‑1 (MQ=255)
                                                                                                         atatTACCGACCGCGGGCAAGGTCAATCAGCTTACCGGGGGAGAGCGC‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTCCCGAAAACCCCCCGTTGGTGAGCGGCATCGGCTCGTTTTCGGGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTCCCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATa                                                                                                                                 <  2:156742/238‑1 (MQ=255)
                                                                                                            ttCCCGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTCCCGCAAACTCCCCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGacgacg                                                                                                                                                 <  1:506234/219‑1 (MQ=255)
                                                                                                               aCGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTTGCGGGACATTTTTCGCGGACCGAGG‑GTAAGTTTTAACTTAACGAAAGCAATTACCCCCTCTTCCTGTGACGGTGGGGCTGGCAGTTCGGTCGCCCGACGACCGAGCACCCCACGGAGACAGGGca                                                                                                                          >  2:607257/1‑239 (MQ=255)
                                                                                                                cGACCACGGCAAGGGTTCAGCAGGTTAGCGGGGGAGAGCGG‑CCCACGGGGATGGCGGCCCAGTGCCTTCAGTCCCGCAAACTCACCGCTGGTGGGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCcag                                                                                                                         <  2:319765/239‑1 (MQ=255)
                                                                                                                 gACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGGGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGGAACGGGCcagc                                                                                                                        >  1:219007/1‑239 (MQ=255)
                                                                                                                  aCCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGGACATTTCGCGCGTACCGAGG‑GTAAGGTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGGGGGCCTCGCAGTTCGTTCGCCTGACGACCCCGCCCCCCACCGGTCCGGGCcagcg                                                                                                                       >  2:53995/1‑238 (MQ=255)
                                                                                                                  aCCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACAATTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCcagca                                                                                                                       >  1:841342/1‑239 (MQ=255)
                                                                                                                    cACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCCTCGCGGGACATTTCGCCCGTACCGAGG‑TTTAGTTTGAACTTACCCAAAACAATTACCGCCCCTTCCTGTGCCGGTGCGCCTGGCAGGTCGTTCGCCTGACGCCGCACCACCGCGCGGCTACGGGCcacgcgt                                                                                                                     >  2:717305/1‑234 (MQ=255)
                                                                                                                           aaGGTTCATCAGCTTCGCGCGGGAGAGCGG‑CTCACGCGGAGGGCTGACCAGTGCCTTCAGTACCGCAACCCCCCCGCGGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCAcgc                                                                                                               <  2:1348460/238‑1 (MQ=255)
                                                                                                                           aaGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCGGACCAGGGCCTTCAGTCCCGCAAACTCCCCGCTGGGGAGCGGCTTCGGCTCGTCTCCGCGAAACATTTCGCGCGTACGGAGG‑TAAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCAcgc                                                                                                               <  2:699727/238‑1 (MQ=255)
                                                                                                                                  atcaGCTTACCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCCCCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACGGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTaaa                                                                                                       <  1:912680/239‑1 (MQ=255)
                                                                                                                                  atcaGCTGAGCGCGGGAGAGCGG‑CCCACGCGGATGGCTGACCAGTGCCGTCAGTACCGCAACCTCCCCGCTGGTGAGCGGCAGCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTaaa                                                                                                       <  2:1215142/239‑1 (MQ=255)
                                                                                                                                  atcaCCTTAGCGCGTGAGAGCGG‑CTCCCGCGGATGGCTGCCCAGTGCCTTCAGTACCGCAAACTCTCCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTGGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTaaa                                                                                                       <  2:730429/239‑1 (MQ=255)
                                                                                                                                  accgctttACCGCGGGAG‑GCGGCCTCCGGGGGATGCCTGCCCAGTGCCTTCAGTCCCGAAACCCCCCCGGTGTGGGGCGGCATCGGCTCGTCTCCGCGGAACATTCCGCGCGTACCGGGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTaaa                                                                                                       <  2:745074/233‑1 (MQ=255)
                                                                                                                                       cTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTTGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAAATTACCGAAATCAATTACAGCCTCTTCCTGTGACGGTGGGCCAGGCAGGTCGTTCCGCTGACGACGCAGCACCCCACGGAAACGGGCCAGCGGTTCACGCGGGGTCAACGGtt                                                                                                  >  1:1089191/1‑239 (MQ=255)
                                                                                                                                       cTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGGACATTTCGCGCGTACAGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGGGCGCCCCGCAGTTCGTTCGCCCGCCGACGCAGCACCGCCCGGATACGGGCCCACCGTTCCCGCGGGGTAAACgggt                                                                                                  >  2:1021504/1‑237 (MQ=255)
                                                                                                                                       cTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCCCGGAACATTTCGCGCGTACCCAGG‑TTAAGTTTGAAATTACCGAAAGCCATTACCGCCCCTTCCCGTGACGGTGCGCCTTGCAGGTCGTTCGCCTGACGCCTCCCCACCGCACGGCTACGGGCCACCCGTTCAGCCCGGTTAAACggct                                                                                                  >  2:959964/1‑237 (MQ=255)
                                                                                                                                              cgGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGGACATTTCGCGCGTACCGAGG‑TTAAGTTTGTACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGCAGCCCCACCCCACGGGTACGGGGCCCCCGGTCACCCGGGGTAAAAGGGTTTGGGAt                                                                                           >  2:127464/1‑239 (MQ=255)
                                                                                                                                                 gagaGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCCAGG‑CTAAGTTTGAACTTACCGAAAGCAATTACCCCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGGCCCAGCACCCCCCCGATACGGGCCAGCCGATCACGCGGGTTAAACGGTTTTGGGATGTa                                                                                        >  1:269820/1‑239 (MQ=255)
                                                                                                                                                      cGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCCCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGGGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGCTACGGGCCAGCAGTTCACGCGGGTTAAACGGGTTTGGAATGTAgtcg                                                                                    >  1:1208613/1‑238 (MQ=255)
                                                                                                                                                       gg‑CTCACGCGGATGGCTGACCAGTGCTTTCAGGCCGCCAAACCCACCCTGGGGGAGCGGTCTCGGCTCGTGTTGGCGGATGATTTCGCGCGTGCCGAGG‑TTAGTTTTGAATTTCCGTAAAGAAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGGACCGCACGGATACTGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAgtcgg                                                                                   <  2:1241005/238‑2 (MQ=255)
                                                                                                                                                              cgcgGAGGGCTGAGCAGTGCCTTAAGTACCGCAAACTCACCGCTGTTGAGCGGCATCGGCTCGTCTTCGCGGAACTTTTCGCGCGTCCCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGcc                                                                            <  1:78148/239‑1 (MQ=255)
                                                                                                                                                               ggggAGGGCTGACCAGTGCCTTCATTCCCGCAAACTCACCGCTGGTGAGCGGCACCGGCTCGTCTTCGGGGAACATTCCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATAACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCa                                                                           <  1:320003/237‑1 (MQ=255)
                                                                                                                                                               gcgGATGGCTGCCCAGTGCCTTAAGTACGCAAAACTCCCCGCTGGTGGGCGGCATCGGCTCGTCTTCGCGGACCATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCa                                                                           <  1:1255427/239‑1 (MQ=255)
                                                                                                                                                                   aTGGCTGCCCAGTGCCTCAAGTCCCGCAACCACCCCGCTGGTGAGGGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTCCCGGGG‑TTAAGTTTGACCTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAACACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAAtc                                                                        <  2:346407/238‑1 (MQ=255)
                                                                                                                                                                     ggCTGACCAGGGCCTTCAGTACCGCAAACTCCCCGCTGGGGAGCGGCATCGGCTCTTCTTCGCGGAACATTTCGCGCGTCCCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAAtctc                                                                      <  2:219007/238‑1 (MQ=255)
                                                                                                                                                                      gCTGCCCAGTGCCTTCAGTCCCGCAAACTCACCGCTGGGGGGCGGCATCGGCTCGTCTTCGCGGAACATTCCGCGCGTCCCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTcc                                                                     <  2:783603/238‑1 (MQ=255)
                                                                                                                                                                      gCTGACGCGTGCCTGCAGTCCCGAAACCTCCCCGCTGGTGGGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTcc                                                                     <  2:770639/238‑1 (MQ=255)
                                                                                                                                                                        tGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAGCATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAg                                                                   <  1:1092474/238‑1 (MQ=255)
                                                                                                                                                                          aCCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAACAGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAgg                                                                  >  1:1142151/1‑237 (MQ=255)
                                                                                                                                                                               ggCCTTCAGTCCCGCAACTTCCCCGCTGGGGAGGGGCTCCGGCTCGCCTTCGCGAAACATTCGCCGCTTA‑CGAGGTTTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACg                                                            <  2:929397/237‑1 (MQ=255)
                                                                                                                                                                                 ccTTCAGTCCCGCAACTCCCCCGGTGGGGGGCGGCTCCGGCCCGTCTCCGCGGAACCTTCCGCGCGTCCCGAGG‑TTAAGTTGGAACTTACCGAAAGCAATTCCCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATa                                                         <  2:1159521/239‑1 (MQ=255)
                                                                                                                                                                                 ccTTAAGTCCCGAAACCTCCCCGCGGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGGGG‑TTAAGTTTGAACTTCCCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATa                                                         <  1:1327589/239‑1 (MQ=255)
                                                                                                                                                                                      ccccgcGCAACCTCGCCGGTGGTGGGCGACTTCGGCTCGTCTGCCCGGAACTTTCCGCGCGATCGGGGG‑TTAAGTTGGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTc                                                    <  2:885511/234‑1 (MQ=255)
                                                                                                                                                                                         ccggaaaaCGCCCCGCTGGGGAGCGGCAGCGGCTCTTTGCCGAGGAACGTTTCCCGTGTACCAGGG‑TAAGGTTTGAAGTTCCCGAAATGAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTcc                                                   <  2:538855/232‑1 (MQ=255)
                                                                                                                                                                                             cAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTTAACTTACCGAAAGCAATTACCGCCCCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGCCGCCGCACCGCCCGGATACGGGCCAGCAGTTCACCCGGGGTAAACGGTTTTTGAATGTTGTCGTCAGCGCCACTCTCCCGGCCTACGCTACGGTCCActtct                                             >  2:62406/1‑239 (MQ=255)
                                                                                                                                                                                             cAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCct                                                                                                                                                                                            >  2:1084929/1‑96 (MQ=255)
                                                                                                                                                                                             cAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGAAATTACCGCct                                                                                                                                                                                            <  1:1084929/96‑1 (MQ=255)
                                                                                                                                                                                                    aCCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTTAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTTCGCCTGGCAGGTCGTTCGCCTGACGACGCAGCCCCGCCCGGATACGGGCCAGCCGTTCACGCGGGTTTAACCGTTTTGGTATGTAGTCGTCATCGCCCATCTCCCCGCCTACGCTACGCTCCCCTTCTTCCCCtt                                      >  2:662991/1‑239 (MQ=255)
                                                                                                                                                                                                         tGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCTTACCGAGT‑TTAATTTTGAACTTACCGAAAGAAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGc                                  <  1:1178317/238‑1 (MQ=255)
                                                                                                                                                                                                          ggTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGGGCGCCTGGCAGTTCGTTTGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCCCCAGGCCTCCGATACGGTCCACTTCTTCCCCCTTCGcc                                 >  2:1089141/1‑238 (MQ=255)
                                                                                                                                                                                                          ggTGAGCGGCATCGCCTCGTTTTCGGGAAACATTCCGCGCGTCCCGAGG‑TTAAGTTTGACCTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGcc                                 <  2:768214/238‑1 (MQ=255)
                                                                                                                                                                                                            tgggcgcCATCGGCTCGTTTTCGCGGAACATTCCGCCCGTCCCGAGG‑TTAAGTTGGAACTTCCCAAAAGCACTTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGt                               <  2:1010579/235‑1 (MQ=255)
                                                                                                                                                                                                            tGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGt                               <  2:451480/238‑1 (MQ=255)
                                                                                                                                                                                                            tGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGt                               <  1:169834/238‑1 (MQ=255)
                                                                                                                                                                                                            ggggCGGCATCGGCTCGTCTCCGCGGAACATTTCGCGGGTCCCGGGG‑TTAAGTTTGAACTTACGGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGt                               <  2:114288/235‑1 (MQ=255)
                                                                                                                                                                                                                   cagcGGCTCGTCTTCGCGAACCTTTCCGCGCGTCCCGAGT‑TTAAGTTTAAACTAACCAAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATa                        <  2:204966/235‑1 (MQ=255)
                                                                                                                                                                                                                       ggCTCGTCTTCGCGGACCATTTCGCGCGTACCGAGG‑TTAAGTTGGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGAt                   <  1:235314/239‑1 (MQ=255)
                                                                                                                                                                                                                        gctctcctgcgcgGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACATACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGAt                   <  2:682800/229‑1 (MQ=255)
                                                                                                                                                                                                                                  gcgGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGt        >  1:106558/1‑239 (MQ=255)
                                                                                                                                                                                                                                      aaCATTTCGCGCGGACGGGGG‑TTAAGTTTGACCTTACCGAAAGCATTTACCGCCTCTTCCTGTGACGGGGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTGTCGCCGTCACCATAATGAt                   <  2:587122/224‑1 (MQ=255)
                                                                                                                                                                                                                                       aactttCGGTCGGACCGTGG‑TTAAGTGTAAACTGCCCTAAAGCAATTTCCTCCGCTTCCTGTGACGGTGCGCATTGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGTGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTCCGATGCGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGct    <  2:1088892/235‑1 (MQ=255)
                                                                                                                                                                                                                                       aCATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGct    <  1:62406/238‑1 (MQ=255)
                                                                                                                                                                                                                                       aCATTCCGCGCGTACCGAGG‑TTAAGTTGGACCTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGctc   <  1:960849/239‑1 (MQ=255)
                                                                                                                                                                                                                                       aCATTCCGCCCGTACCGAGG‑TTAAGTTTGAACTTCCCGAAAGCAATTCCCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGct    <  2:106558/238‑1 (MQ=255)
                                                                                                                                                                                                                                        cttttCGCCCGTACCGAGG‑TAAAGTTTGAACTTCCCAAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGctct  <  2:1142151/237‑1 (MQ=255)
                                                                                                                                                                                                                                        cATTTCGTGGGTACCGAGG‑TTAAGTTTGAACTTCCCGAAAGAATTTCCCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGctct  <  1:1274111/239‑1 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                         
GCCCAGACCCCAGACGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGTACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTCGTCTTCGCGGAACATTTCGCGCGTACCGAGG‑TTAAGTTTGAACTTACCGAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCATCGGGTTGCTCT  >  NC_000913/3535898‑3536367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A