Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F9 I0 R1
|
72 |
138.2 |
2894862 |
96.7% |
2799331 |
224.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,862,662 |
T→G |
21.2% |
pseudogene (942/1617 nt) |
glvC ← |
pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,862,662 | 0 | T | G | 21.2%
| 84.1
/ 3.0
| 58 | pseudogene (942/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base T (30/14); new base G (4/10); total (34/24) |
| Fisher's exact test for biased strand distribution p-value = 1.29e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGTTGC‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAA > NC_000913/3862425‑3862889
|
cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGTTg < 1:1213083/239‑1 (MQ=255)
tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAGGGTGC‑gggg > 1:207405/1‑238 (MQ=255)
tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGTTGC‑GGGa < 2:684848/239‑1 (MQ=255)
tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑CT‑TAGAGTGC‑gggg > 1:986196/1‑238 (MQ=255)
aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGATT‑AAGGTTG‑‑GGGAATCac > 2:248536/1‑238 (MQ=255)
aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGTTGC‑GGGGATCa > 1:185378/1‑238 (MQ=255)
cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGGTGCGGGGAATCacaaaccc > 1:502906/1‑231 (MQ=255)
atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAGGTTGC‑GGGAATCA‑AC‑AAGcccc‑ccccctt > 2:1081795/1‑234 (MQ=255)
cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAAGGTGC‑GGGGATCA‑GC‑AAACCCC‑CCAC‑TTTTT‑CCCgg > 1:1097435/1‑238 (MQ=255)
gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGTGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAGGTTGC‑GGGAATCA‑GC‑AAACCCG‑CCAC‑tttttacccttttt > 1:109894/1‑229 (MQ=255)
gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAAGTGGC‑GGGGATCA‑GC‑AACACCC‑CCCC‑TTTTT‑CCCCAttt > 1:773953/1‑238 (MQ=255)
gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCACATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAACAACGGAGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GA‑AAACTTGC‑AGGGACAA‑AC‑AAGCTCG‑CCCC‑ATTTA‑ACCCAtttt > 2:1040278/1‑239 (MQ=255)
aaCGTCGGGATCCGTTTTTGCAGAAAACCCTAGCCAATCAGCCCCCCCCCCATGTCCCCCACCACACCAAAGAAATACATGCCGGTCGACATGGAGGCCGCCAGCACGGGGTGTACCGCAAACAGCAACGGGGAAATGAACAGGAAGTTAAATCCCGGCGGTTGGGTAATCCCCCCAAGCTGGGG‑GG‑TT‑AAGGTTGG‑GGAAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTg < 2:835676/238‑1 (MQ=255)
cgggcGGGATCCAGTTTCGCGAAAAACCCTACCAAACCAGCCCCCCCCCCATTGTCCCCCCCACACAAAAGAGATACATTACGGTCGACATGGAGGCCGCCGGCACGGCGTGACCCAAAAACAGCAACGGTGAAATGAACGGGAAGGAAAACCCCGGCGGTTCGGTAATCCCCACCAGAAGGGG‑GG‑TT‑AGGGTGGG‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTg < 2:639637/233‑1 (MQ=255)
ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TA‑AAGGTGGG‑GGGAATAACGA‑AAGCGC‑‑CCCC‑TTTTA‑‑CCAATTTTCTGGTgggggcgag > 2:1249681/1‑234 (MQ=255)
cattttgGCGGAAAAACATCGTAAACCACACCCCCCCCAATGTCCCCCACCACACAAAAGAAATACATCGGGGTCGACATTGAGCCCGCCAGCAGGGCGTGTCCCGCAAACAGCAGCGGTAAAAGGAAAGGGAAGGTAAATCCCAGCGGTTCGGTAACCCCCCCCAGCAGGGC‑GG‑TT‑AAGGTTGC‑GGAACTAA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTa < 2:207405/236‑1 (MQ=255)
aGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGGTTC‑GGGGATCA‑GC‑AAGCCCC‑CCAC‑TTTTA‑CCCCATTTTTCTGTGCGGC‑AGTGAAGTAc > 1:762962/1‑239 (MQ=255)
ttttGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAAAGGTGGG‑GGGAAT‑A‑GC‑AAACCCG‑CCCC‑CTTTT‑CCCGATTTTCCGGTgggggcggggaggcg > 1:639637/1‑226 (MQ=255)
tttgggcaaaaaaCCTATACACTCAGCCCCCCGCCCAGGTCCCCCCCCACCCAAAAGAGAAACATTACGCGCGAAATGGAGGCCGCCAGCAGGGGGTGTACCGAAAACAGAAACGGGAAAAGGAACAGGAGGTTAAATCCCGGCGGTGCGGTAATCCCCACCAGCATGGG‑GG‑TT‑AGGGTGGG‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACAt < 2:1041887/230‑1 (MQ=255)
tttGGGATAAACCCGGGTCAACCCGACCCCCCCCCTTTTGCCCCCCCCCACAAAGGACATACTTTAGGGTGGACATGGAGGCCGCCAGCCCGGCGGGACCCCAAAACAGACACGGAGAAATGATAAGGAGGGAAAGTCCAAGCGGAGCGTTACTTCCCCCCGGCATGGG‑GT‑TT‑AGGGTGGG‑GGGAAGAA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTAc < 2:874743/236‑1 (MQ=255)
tgcgggaaaaaCCTAGTAAACCAGCCCTCCGCCCATGTCGCCCCCCACACAAAAAAGATACATTACGGTGGAAATTGAGGCCGCCGGCCCGGCGTGAACCGAAACCACAAAGGGAGAAAGAAACAGGAAGTAAAATCCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GG‑TT‑AAGGTTGG‑GGAAAACA‑GA‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCg < 2:1097435/232‑1 (MQ=255)
aaaCCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAAGGTGT‑GGGGATCA‑GC‑AAAACCG‑CCCC‑TTTTT‑TCCGATTTTTCCGTGCGGC‑GGTGGAGGACATCGCTaaaaaa > 1:231935/1‑239 (MQ=255)
tCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TT‑AAGGTTGG‑GGGAA‑CA‑AC‑AAAGCCC‑CCCC‑TTTTATCCCGTTTTTCCGGTGGGGC‑GGGAAAGAAC‑TCGCCAAAGAAAAGcccc > 2:316051/1‑237 (MQ=255)
tCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAAGGTGG‑GGGGATCA‑GC‑AAGCCCC‑CCCC‑CTTTT‑CCCCATTTTCCGGGGCGGG‑AGGGGAGTACAACCCCTAAAAAAAGCCCCCGGc > 1:136869/1‑238 (MQ=255)
tCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑CT‑AAGGATTC‑GGGGATCC‑GC‑ACACCCC‑CCCC‑CTTTA‑CCCCAATTTTCCGTGCGGC‑GGTGAATGACATCGCCAACAAAATGctcccgac > 2:517063/1‑231 (MQ=255)
cAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGGTGC‑GGGGATCA‑GC‑AAGCCCC‑CCCC‑TTTTA‑ACCGCTTTTCCGGGGGGGG‑AGTGAAGGACATCGCTAAAAAAATGCCCACGGCa > 1:968735/1‑238 (MQ=255)
cGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAGGGTGC‑GGGGAACA‑GC‑AAACCCG‑CCCC‑TTTTT‑CCCCGTTTTTCGGTGCGGG‑CGGGGAGTACACCGCCAAAAAAAAGCCCCCCGGCCCCAAGAtt > 1:535343/1‑239 (MQ=255)
tGTTGCCCACCACACCAAAGAAATACATTACGGACGACATTGAGGCCGCCAGCACGGCGTGTCCCGCAAACAGCAACGGTGAAATAAACAGGAAGGAAAATTCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GT‑TT‑AAGGTTGC‑GGGAATCA‑GA‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑g < 1:1037355/239‑1 (MQ=255)
ggtcccccACCACCCAAAAGAGATACATTACGGTCGACATGGAGGCCGCCAGCACGGGGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGATAAATTCCAGCGGTTCGGTAACTCCCACCAGCAGGGC‑GG‑TA‑AGGGTTGC‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTg < 1:1427858/232‑1 (MQ=255)
accacaccaAGGAGCAACATTGCGGTAGGAATGGGGGCCGCCGGCACGGCGGGTCCCGCAAACAGCAACGGTAAAATGAAAAGGAAGGTAAATCCAAGGGGTTCGGTAATCCCCACCAGCAGGGC‑GT‑TT‑AGGGTGGG‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑g < 2:1098257/239‑1 (MQ=255)
cacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAAGTTGC‑GGGGAACA‑GC‑AAGCCCC‑CCAC‑TTTTA‑CCCGATTTTTCGGGGGGGC‑GGGGAAGGAAAACGCTAAAAAAATGCCCACCGCACCACAGAATTTTGAGGTTACCGT‑ga > 1:1151775/1‑238 (MQ=255)
accaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCGCGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATCCCCCCCAGCAGGGC‑GG‑TT‑AAGGTGGC‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCAc < 1:44161/207‑1 (MQ=255)
caAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAAGGTGC‑GGGGATCC‑GC‑AAACCCG‑CCCC‑TTTTT‑CCCGCTTTTTCCGGGCGGC‑AGGGAGATACATCGCCAAAGAAACGGCCCCCGCACCCAAACTATTTTA‑GGTACCCT‑GCA‑gggga > 2:1030318/1‑237 (MQ=255)
aTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGTTGC‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGGAGTACATCGCTAAAGAAATGCCCACGGCACCCAAGATTTTTGA‑GTTACCGT‑GCA‑CGG‑GAAAACCg > 2:770245/1‑238 (MQ=255)
tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGGTGC‑GGGGATCA‑GC‑AAACCCG‑CCCCTTTTTC‑CCCGTTTTTCCGG‑GCGGG‑AGGGGAGGAAACCGCCCAAAAAAAGCCCCCCGGCCCCAAGATTTTTTT‑GTTTCCCTGGCA‑GGG‑CAAAAccc > 1:696034/1‑237 (MQ=255)
cATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGGGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAAGGTGC‑GGGGAACA‑GC‑AAACCCC‑CCCC‑TTTTA‑CCCCATTTTTCGGGGCGGG‑AGTGAAAGACAACGCCAAAAAAATGACCACGGCACCAAAAATTTTTTA‑GTTACCCT‑GCACGGG‑CAAAAcccct > 2:537825/1‑235 (MQ=255)
cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TA‑AAGGTGCC‑GGGAACAA‑CC‑AAGCCC‑‑CCCC‑CTTTA‑TCCCATTTTTCGGGGCGGCGCGGAAAGAACAACCTCAAAAAAATCCCACCGGCCCCAAAAATTTTTTA‑GTTTCCGG‑GAG‑GGG‑ACAAACCCCCTTcccg > 2:491274/1‑237 (MQ=255)
cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGATG‑AAGGTTG‑‑GGGAATTA‑GG‑AAACCCC‑CCAC‑CTTTT‑CCCGATTTTTCCGGGGGGG‑AGTGGAGTAAAACGCTAAAAAAAAACCCACAGCACCAAAGAATTTTGA‑GATAACGT‑GGC‑AGG‑CAAAAACGCCTTCCggg > 2:1382028/1‑239 (MQ=255)
gTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGGTGG‑GGGGATCA‑GCAAAGCCCC‑CCCT‑TTTTA‑CCC‑ATTTTTCCGTGCGGC‑CGTGGAGGAAAACGCCAAAAAAAAGCCCCCCGCCCCCAAGAATTTTTA‑GGTACCGG‑GCA‑GGGCCAAAACCCCCTCCCGGGa > 1:1048976/1‑239 (MQ=255)
gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAGGGTGC‑GGGAATCA‑AC‑AAAACCGCCCCC‑TTTTC‑CCCCATTTT‑CGGTGCGGG‑CGTGAAGGACAACCCTAAAAAAAAACCCACCGCACCCCAAATTTTTTA‑AGTAACGT‑TGA‑GGG‑CAAAACCCCCTCCCGGGaaaca > 2:1424731/1‑236 (MQ=255)
gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAGGTTGC‑GGGGAACA‑GC‑AAGACCC‑CCAC‑CTTTT‑CCCGATTTTTCGGTGCGGC‑AGGGAAGTAACACGCTAAAGAAAAGCCCCCCGCACCAAAGATTTTTTA‑GGTAACGG‑GCC‑AGG‑GAAAACCCCCCTCCCGGaacaa > 2:234796/1‑239 (MQ=255)
gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGGTTC‑GGGGAACA‑GC‑AAGCCCC‑CCAC‑ATTTA‑ACCGATTTTTCGGTGGGGC‑AGGGAAAGAAAATGCCAAAAAAAAGCCCCAGGCCCCAAAAATTTTTTG‑GTTCCCGG‑CCG‑GGG‑CAAAACCCCCTTCCGGGAAAAACAAttctaccg > 2:1072488/1‑232 (MQ=255)
caaaaCAGCAAGGGTGAAATGAACAGGAAGGAAAATCCCGGCGGTTCGGAAATTCCCACCAGCATGGC‑GG‑TT‑AGGGTGGG‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa < 1:994202/237‑1 (MQ=255)
aaaaaCAGCAGCGGTGAAATGAACAGGAAGGTAAATCCCAGCGGTTCGGTAATCCCCACCAGCATGGG‑GG‑TT‑AAGGTTGC‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa < 1:1438721/237‑1 (MQ=255)
cAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAAGTTTC‑GGGGATTA‑AC‑AAACCCC‑CCCC‑CTTTT‑CCCGGTTTTTCGGTGCGGC‑AGGGAAGTAAATCGCCACAAAAAAACCCCCAGCACCAAACACTTTTTA‑GTTACCCC‑TCA‑GAG‑CAAAACCGCCTGCCCGGGACAACCAATTTAGCGGAGCGGCGCtacacactca > 2:1386523/1‑229 (MQ=255)
aaaGCAACGGTAAAAGGAACATGAAGGTAATTCCCAGCGGTCCGGAATCCCCCCCCAGCGTGGG‑GG‑TT‑AAGGTGGG‑GGAAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAActct < 2:136869/237‑1 (MQ=255)
aaCGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGTTTC‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCCCCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCCCCAACTGAACTCTTGccg > 1:309975/1‑237 (MQ=255)
cGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGTTGC‑GGGAATCA‑GC‑AAGACCC‑CCCC‑CTTTA‑CCCGATTTTCCGGTGCGGC‑CGGGAAGTACATCGCTCAAGAAATTCCCACGGCACCCAAGATTTTTTA‑GGTAACCC‑GCA‑GGG‑GAAAAACGCCTTCCGGGAAAAACGATTTCCACGGCCCGGAGCCCAAACAGaaacacttcagat > 2:446498/1‑228 (MQ=255)
aaaagaaaGGAAAATCCCGGCGGTCGGGAAATTCCCCCCAGCATGGC‑GT‑TA‑AGGGGTGC‑GGGAACCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:530942/231‑1 (MQ=255)
aaaagaaaGGAAAATACCAGCGTTTGGTAAATCCCCACCAGCAGGGG‑GG‑TT‑AGGGTGGG‑GGAAAACA‑GA‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 2:1419186/231‑1 (MQ=255)
aaaaGGAAGGTAAATTCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GA‑TT‑AGGGTGGC‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:770245/234‑1 (MQ=255)
agaggatgtaaaaTCCCAGCGGTACGGTACTCCCCACCGGCATGGC‑GG‑TT‑AAGGTTGC‑GGAAAGCA‑GC‑AGGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:780352/229‑1 (MQ=255)
aCAGGAAGTTAAAGTCCAGCGGTTCGTTAATCCCCCCCAGCATGGC‑GG‑TT‑AAGGGTGC‑GGGAATAA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:650117/239‑1 (MQ=255)
gAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAAGTTGC‑GGGAATCA‑GC‑AAACCCC‑CCCC‑TTTTT‑CCCCATTTTCCGGTGCGGC‑CGTGAAGTACATCGCTAAAAAAATTCCCACGGCACCAAAAATTTTTTA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACCACGATTTCAGCGGCTCCGCGCTCCAACTTAAATCCTGCAGATGCTCTGccccctac > 2:530942/1‑233 (MQ=255)
ggtttggttAATCCCCCCCAGCAGGGC‑GG‑TT‑AGGGTTGC‑GGAAAACA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCt < 1:316051/230‑1 (MQ=255)
caccaGAATGGC‑GG‑TA‑AAGGTGGG‑GGGAATCA‑GA‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:9660/239‑1 (MQ=255)
cacaaGGATGGG‑GG‑TT‑ACGCGTGT‑GGGAATGC‑GA‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTGCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATTCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACATCTGCCGGAc < 2:107189/239‑1 (MQ=255)
ggg‑TT‑AGGGTTGG‑GAGAAGCA‑GC‑AGGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:84386/237‑1 (MQ=255)
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CCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAGGTTGC‑GGGAATCA‑GC‑AAGCCCG‑CCAC‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAA > NC_000913/3862425‑3862889
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
