Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F27 I0 R1
|
51 |
79.9 |
2053078 |
82.8% |
1699948 |
215.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,056,115 |
A→C |
20.7% |
G75G (GGT→GGG) |
glnL ← |
sensory histidine kinase in two‑component regulatory system with GlnG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,056,115 | 0 | A | C | 20.7%
| 142.7
/ 6.2
| 62 | G75G (GGT→GGG) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG |
| Reads supporting (aligned to +/- strand): ref base A (45/2); new base C (2/13); total (47/15) |
| Fisher's exact test for biased strand distribution p-value = 1.23e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGT > NC_000913/4055881‑4056347
|
cTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATCCGAGCGCCCGTCGATGACCAGCGTCCCTTCGTTATCGGTAAAACCt > 1:1017083/1‑238 (MQ=255)
ccgcgccACGTAAACGGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTACCGGATCCTG‑ACTTAAGCGGCGCTGGGTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCAGCAATACGCTGGGCCGTCCCAGAAAGGTTATACAGGCGCCCGCGGCAGACCCGGGTCCCTTCGATACCGGAAAAACCtacccgc > 2:903190/1‑233 (MQ=255)
tttttctctcCTGGGCCGCGCCGCGCACTTAACCGCGGGGAGCCACCTGTTGGGGGGGGGGTTGGTGTTCCCGAACTGAGGCGGCGTTGTTTTCCCACCGGAGCC‑TCCCCAGAAGGGTCCTTGCCGCCCGGATTCCGCTGGGCCGTCACAGAAAGGATATGCGCGCCCCCGTCGAGGACCAGCGTCACTTCGTTGTCGGTAAACCCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTc < 2:1000804/233‑1 (MQ=255)
ttttAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGa > 1:918680/1‑221 (MQ=255)
aTGTGCCAGGCCGCGCACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGAGATTTAAt > 1:1000804/1‑238 (MQ=255)
ccGCGCACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGAAGCt > 1:199528/1‑239 (MQ=255)
ccGCGCACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCCCGTATTTTAATGGGAAGTAGcc > 1:534203/1‑238 (MQ=255)
cgcACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTaaa > 1:979160/1‑239 (MQ=255)
cgcACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGAAGCTCac > 1:868143/1‑238 (MQ=255)
aaTCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATTCGAGCGCCAGTCGATGACAAGCGTCACTTCGTTCTCGGTAAACCCTTGCACCGCCTCCAGGCTTTCCTGCTTCAGCTCGTATTTTAATGGAAAGTAGccaaccaggtac > 2:934926/1‑228 (MQ=255)
gggCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCCCAAAAGTTCCGGTAAc > 1:928321/1‑239 (MQ=255)
gcagcaACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATCCCGTCCGGCATACGCTGGGCCGGCACAGAAAGGATATGCGAGCGCCCGTCGATGACCACCGTCACTTCGTTCTCGGTCAAACCTGGCCCCGCCTCAAGCCTTTCTTGCTTCAGCTCGATATTTAATCAGAAGGAGCCCAACAGtgcagggaaagg > 2:751876/1‑228 (MQ=255)
agcaACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAACGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTCCTTGCCTCACCTCCATCTTTAATTAACAGTATCCAAACCTTCCCGGTAActgg > 2:316124/1‑235 (MQ=255)
gcaACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATAGTCGAGAGCCCGTAGATGACCATCGTAACTACGTTCTCGGGAAACCCTTGCCCCACCTCCCGACTTTCTTGCATCTCCACCATAATTAATAAAAAGTGACCCAACAGTTCCGGAAACAgtgt > 2:762661/1‑239 (MQ=255)
tGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTTCg > 1:256158/1‑239 (MQ=255)
ttCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAACACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCACCAGTTCCGGTAACGGTGTACCCAACCATTTTGGGGAGCTTTtgg > 2:931295/1‑239 (MQ=255)
tG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGCTGACCAGCGTCACTTCGTAATCGGTAAAACCTCGCCCCGCCTCCAGACTTTCTTGCATAAGCTCGATATTTAATGAGAAGTAGCGCAACAGTTCCGGTAAAGGTGAACCAAACAATTTACGGAGGCTTATGGCGa > 2:211235/1‑238 (MQ=255)
aaGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCCCAACAGTTCCGGCAACGGGTTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAgttg > 2:54711/1‑239 (MQ=255)
aaGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGAAATTTATTGGGAAGTAGCCCAACATTCCCGGTAACGGGTAACCAACCAATTTGCGGGGGCTTTGGGCGGCCAgttt > 1:611810/1‑238 (MQ=255)
aGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACGGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGGGGGAGCTTTGGGCGGGCGgttgt > 2:407989/1‑239 (MQ=255)
aGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCCCTTCGTTATCGGTAAAACCTTGCCCCGCCTCCCGCCTTTCTTGACTCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACCGTGTACCAAACAATTTGCGGGAGCTTTGGGGcagcaggttg > 2:199076/1‑235 (MQ=255)
ggggttGGTTATCCAGCGGGCCCATCCCCAGCAGGAT‑CATGCCGCCCGGCATACGCTGGGCCGTCAAAGAAAGGATTGGCGAGCCCCCGTCGATGCCCAGCGTCACTTCGTTACCGGAAAACCCTGGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAgttgtt < 1:962346/232‑1 (MQ=255)
cgcTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCCCTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGGGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAACCAATTTCCGGAAGCTTTGGGCGCGCAgttgttcgca > 1:707124/1‑235 (MQ=255)
cgcTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGCAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGATTTGGGGGAGCAGttgttgggg > 2:730879/1‑236 (MQ=255)
cTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGcgcg > 1:729690/1‑238 (MQ=255)
tccctgcGGGGCCATCTCCAGTCGGAC‑CCTGCCGTCCGGAATTAGTGGGGCCGTCCAAGAAAGGATACGCGACCGCCCGTCGTCGCCAAGCGTCACTTCGTTATCGGTAACCCCTTGCCCCGCCTCCAGACTGTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGt < 2:912812/233‑1 (MQ=255)
acccagggggcccATCCCCAGAGGGAA‑CAGCCCGCCGGGCACGCGGTGGCCCGTCACAAAAGGGATAGGCGAGCGCCCGTCGATGCCCAGCGTCACTTCGTTATCGGTAAACCCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGt < 1:926469/228‑1 (MQ=255)
cGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGCAACGGTGTACCAAACAATTTGCGGGGACTTTTGGCGGGAAGGTGTTGGGCGGCAgggggggggt > 2:156882/1‑232 (MQ=255)
ccATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGCCCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCGGTTGTTGCGCGGCAGGGTTGGCGTATTgg > 1:72864/1‑239 (MQ=255)
ctcCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAACCAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGAGCGGCAGGGTTGGCGTAATGGATc > 1:360301/1‑238 (MQ=255)
aTGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTACCGGTGTACCAAACAATTTCCGGGAGCTTTGGGCGAGCCGTTTTTTCCCGCCCGGGTTGGCGTAATGGATCGCCA‑GGTTGtatc > 2:374283/1‑235 (MQ=255)
ccGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCCGGGTTGGCGTAATGGATCCCCA‑GGTTGTCATCgct > 1:342809/1‑237 (MQ=255)
tCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGa > 1:898189/1‑96 (MQ=255)
tCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTTGGCGAGAAGTTGTGGCGCGGAGGGGTTGGGGTAATGGATCGCCG‑GGTTGTCATCGATTaa > 2:873602/1‑239 (MQ=255)
tCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGAACGCCA‑GGGTGGCATGGaaaaa > 2:404168/1‑235 (MQ=255)
tCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGCAACGGGGTACCAAACAATTTGCGGGAGCCTTGGGCGCGCAGTTGTTGAGCGGCCAGGTTGGCGTAATGGTTAGCCA‑GGGTCTAATCGATTaa > 2:191457/1‑239 (MQ=255)
tCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCACGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTGGTTACACGGCGGGGGTGGCGTAAAGGAACGCCAGGGTTGT‑ACCGATTaa > 2:920219/1‑239 (MQ=255)
attcgcgGGGCCTGCACAAAAATGATATGCGGGCGGCCGGCGATGCCCAGCGTTACTTCGTTACCGGTAAACCCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACaaaa < 1:211235/235‑1 (MQ=255)
atccggtGGCCCGACACAAAAGGCATATGCGCGCGCCTGTCGATGACCAGCGTCACTGCGTTACCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACaaaa < 1:954066/232‑1 (MQ=255)
gCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAAAACGGTTaa > 1:805975/1‑238 (MQ=255)
ttCACAAAAAGGATATGCGGGCCCCCGTCGATGACCAGCGTCACTTCTTTACCGGAAAACCCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAg < 1:404168/238‑1 (MQ=255)
tccaaaaaaaGGATTTGCGTGCCTCCGTCGTTCACCCGCCCTCCGTTGTTCTCGATAAACCCTGCCCCCTCCCCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAGCAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAg < 2:12528/232‑1 (MQ=255)
caacaGAAGGGATTTGCGAGCGCCCGTCAGTCCCCAGCGTCACTTCGTTTCGGGTAAACCTTTCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGc < 1:903190/237‑1 (MQ=255)
atGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATAAGCGAGTTGAGGATc > 1:823411/1‑238 (MQ=255)
gAGCGCCCGTGGAGGCCCGGCTTCATTTCGTTAGCGGAAAACCCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGcc < 1:199076/238‑1 (MQ=255)
gAGCGCCCGGCGGAGCCCAGCTTCACTTGGTTACCGGCAAACCTTTGCGCCGCCTCCAGGCTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGcc < 1:751876/238‑1 (MQ=255)
cgcCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTACTGGATAGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATAAGCGAGTTGAGGATATTCCCCGc > 1:810765/1‑239 (MQ=255)
cgcCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCggc > 1:764337/1‑181 (MQ=255)
cgcCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGc > 1:695440/1‑239 (MQ=255)
ccAGCGTCACTTCTTTATCGGTAAACCCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGc < 1:731773/206‑1 (MQ=255)
ccAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGc > 2:731773/1‑206 (MQ=255)
ccAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATAAGCGAGTTGAGGATTTGCCCAGCATCGGGCTGCGt > 1:944907/1‑238 (MQ=255)
gCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGGTTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCACCATCGGGCTGCGTg > 2:205061/1‑236 (MQ=255)
cGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAATTACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGGGccgg > 1:856397/1‑237 (MQ=255)
cGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCGGCATCGGGCTggtgg > 1:910416/1‑231 (MQ=255)
cGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTg > 1:888148/1‑235 (MQ=255)
tcctcTTCGTTTCCGATAAACCCTGGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGt < 1:513088/235‑1 (MQ=255)
cTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑gg > 1:979483/1‑164 (MQ=255)
cGTTAGCGGTAACACCGTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATa < 1:878997/239‑1 (MQ=255)
tgttaaaacCCTTCCCCCGCCTCCAATCTTCTTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGGTGCGGTAACGGTGTACCAAACTATTTGCGGGATCTTTGGGCGAGCAGGTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAATCa < 2:72864/234‑1 (MQ=255)
tCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGGTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCa > 1:605851/1‑239 (MQ=255)
cGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCTTAAAGCAg > 1:129075/1‑239 (MQ=255)
ggTAAACCCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGt < 1:407989/239‑1 (MQ=255)
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CTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGGCAGCAACCTGCTGGGCGTGCTGTAGCTGTTCCTG‑ACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGAT‑CATGCCGTCCGGCATACGCTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTATCGGTAAAACCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCA‑GGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGT > NC_000913/4055881‑4056347
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
