Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F17 I0 R1
|
92 |
90.7 |
2214160 |
82.3% |
1822253 |
222.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
647,210 |
A→C |
21.2% |
G100G (GGT→GGG) |
citG ← |
2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 647,210 | 0 | A | C | 21.2%
| 100.2
/ 2.6
| 54 | G100G (GGT→GGG) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| Reads supporting (aligned to +/- strand): ref base A (33/7); new base C (2/11); total (35/19) |
| Fisher's exact test for biased strand distribution p-value = 2.33e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGCCGGTAAGGCCAAGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCCAGCAGGG > NC_000913/646974‑647445
|
gcaccGGTAAGGCCAAGCGTGTGGTAAAACCGTTGCCCTGCCGGCAGTTGAGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCAc < 1:473790/235‑1 (MQ=255)
gCCAAGCTTTTGTAACAACGGTTGACCTGCCGGCAGTTGAGAATTATTGGTACGCAGTGCGCGATCGGTCAGGCCCCGGCAGAACCTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGc < 1:1044731/237‑1 (MQ=255)
aaGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCGG‑CCTTTATGCGTGTTTACGCCCGCAGGGGCC‑CGGAACATATCACCTAAGCAAGCCATAc > 1:355530/1‑239 (MQ=255)
tGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTgg > 1:981292/1‑239 (MQ=255)
cAACCGTTGACCGGCCGTCCGTTGTGAATTATGGGTACGCAGTGCGCGATCGGTCGGGCCACGGAAAAAATTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTa < 1:92266/239‑1 (MQ=255)
aCCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTaa > 1:254609/1‑238 (MQ=255)
aCCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGGGTTTACGCCCGCAGGGGCG‑CGGAACAAATCACCTTAGCAAGCCATACCAATTggggggaa > 2:92266/1‑233 (MQ=255)
ttGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACCTATCACCTTCGCAAGCCATACCAATTGAGCGTAATCCGt > 1:697287/1‑239 (MQ=255)
ttGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACAGATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGt > 1:135384/1‑239 (MQ=255)
tGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTg > 1:510444/1‑239 (MQ=255)
gACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGCAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAAAATATAACCTTCGCAAGCCATACCCATTGGGGGGAACCCgggg > 2:906368/1‑239 (MQ=255)
gACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGGTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑ACTG‑CCTTTATGCGTGTTTACGCCCCCAGTGGCG‑CGGAACATAACACACTCGCAAGCAAAACCAATTAGGGGTAACCCGTgg > 2:652168/1‑239 (MQ=255)
gCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATCCCAATTGGGCGTAATCCGTGGAGTa > 1:763137/1‑238 (MQ=255)
gCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGGGTTTACGCCCGCAGTGGCG‑AGGAACATATCACCTTCGCAAGCCATCCCAATTGGGCGTAATCCGTGGAGTa > 1:1104119/1‑238 (MQ=255)
ccGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATCCCAATTGGGCGTAATCCTTGGGGTAc > 1:275755/1‑238 (MQ=255)
aGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCGGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGGGTTTACCCCCCCAGGGGCC‑GGGAACAAATACCCTTCCAAAACCATCCCCATTGGGGGCAATCCGGGGGGAACCCCttt > 2:653964/1‑238 (MQ=255)
aGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGGGTTTACGCCCGCAGGGGCG‑CGGAACATATCACCTTCGCCAGCCCAACCAATTGGGTGTAATCCGGGGGGTACCCCTTc > 2:822586/1‑239 (MQ=255)
ttGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCAGTGGAGTACCGCTTCTGGG‑GCCAttt > 1:810520/1‑238 (MQ=255)
cAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGCGTTGACGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATCCTTGTTTACACCCGCAGCTGCG‑CGGAACCTATCCCCCTCGAACCCCCTACCAATTGGGCGGCAACCGCGCGGAACCCCTCCTTGT‑GCCCTTTccccccacc > 2:406910/1‑232 (MQ=255)
ttCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGGGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCACAAGCCATACCAATTGGGCGCAATCCGGGGAGAACCGCTTCCGGG‑CCCATTTCCGCACCACAg > 2:471657/1‑238 (MQ=255)
cgcgATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGGTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGAACATAGCAGCCCTAAAGAAAAAAT‑CCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGG‑GCCATTTCCGCAACACAGGc > 1:780224/1‑238 (MQ=255)
gcgATCGGCCGGGCCACGGCAAAAACTGGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAACCGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCAc < 1:245528/239‑1 (MQ=255)
cGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAAt > 1:913600/1‑239 (MQ=255)
gTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGCAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGGTTACGCCCGCAGTGGCG‑CGGACCAACTCACCTTCCCAAGCCATACCAATTGGCCGTAACCCGTGGAGAAACGCTT‑TGGTCGCCATTTCCCCACCCAAGCCACCaaaacc > 2:37140/1‑236 (MQ=255)
gTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCC‑CGGAACATATCACCTTCGCAAGCCATACCACTTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCCCACTACAGGCACCAAAtta > 1:568574/1‑238 (MQ=255)
cgcggaaaacaCTGGCCGCCGAAAAAAAAACGGTTGTTGGCTTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCGTCCCTAAAAAAAAAAT‑GCTG‑CCTTTAGGCGTGTTTACGCCCGAAGTGGCG‑CGGAAAATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGaa < 2:810520/228‑1 (MQ=255)
caggggaaaaaCTGGCCGCCGTAGAACAAACGGTTGTGGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGaa < 1:506450/230‑1 (MQ=255)
cGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACg > 1:1079719/1‑239 (MQ=255)
acttggccggtgTAGAACAAACGGTTTTTGGCGTTCCCGGTTGGTTGAGTTGAAGCAACCGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTagc < 1:342545/228‑1 (MQ=255)
aCGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAACTTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAacg > 1:1016465/1‑238 (MQ=255)
tgttgGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCCCCAAATTCACGGAAACGGGCTAGCCAGCCCTGAATCGCCAGCGCGCTGc > 1:776949/1‑239 (MQ=255)
tACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCa > 1:610458/1‑181 (MQ=255)
ttggtggAGTTGAAGCAAACGGCCAATTGCCCAACATAGCAGCCTTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAAGCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTcc < 1:850596/238‑1 (MQ=255)
ttggtggAGTGGAAGCAAGCGGCAAGTTGCCGCCGATAGC‑GCCCCAAAAAAAAAAA‑GGTGCCCTTAATCGGTGTTTCCCCTCGC‑GTGGGGCCGGACCATACCCCCTTCGAAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTcc < 2:296131/238‑1 (MQ=255)
gagttgaAGAAAGCGGCCAATTGCCGCACAGAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCGGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCa < 1:822586/239‑1 (MQ=255)
aaCGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTCCGCCCGCAGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTgc < 1:1092612/239‑1 (MQ=255)
ccGGCCATTTTCCCAACATACCCGCCCTAAAAAAAAAAG‑TCTG‑CCTTTAGGCGTGTTTCCGCCGTGGGTGGCG‑CGGAACATATCGCCCTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCCCCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTgcg < 2:1094671/238‑1 (MQ=255)
aCGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAACCGGGGTAGCCAGCCCTGACTCGCCACCCCGCTCCGGGGGAAATCTTCCAGCCCCCTATCTTTGTgc > 2:779877/1‑238 (MQ=255)
cGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGGACCGCTTCTGGG‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCGGCGGGGGAAATATTCCAGCGCCATACCTTTGGgcgc > 2:720304/1‑239 (MQ=255)
ttGCCCCACATAGCAACCCAAAAGAAAAAAT‑GCTG‑CCTTTAGGCGTGTTTACGCCCGCAGGGGCG‑CGGAACATATCACCTGCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAg < 1:195725/239‑1 (MQ=255)
tccaTAGCCACCCTAAAAAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGTAGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATg < 1:264601/237‑1 (MQ=255)
tccttcgcgcCCCAAAAAAAAAATGGCTT‑CTTTTAGGGGGTTTTCCGCCCGGAGGGGCG‑CGGAATATCCCCCCTTCTAAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATg < 2:254609/231‑1 (MQ=255)
agcagcCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCCGTTAATGCgtc > 1:405598/1‑236 (MQ=255)
cagcCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAACCGCCAGCCCGCGCCGGTGGGAATCTTCCAGCGCCAAACCTTTTTGCCAACCCAAGTTAAtcgaaacc > 2:894587/1‑231 (MQ=255)
tAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGGGGAAATCTTCCAGCGCCCTATCTTTTGGCCAACCCCAGTTAATGCGATCCCCGCgg > 1:427664/1‑238 (MQ=255)
aaGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCatat > 1:998304/1‑201 (MQ=255)
aaaaT‑GCTG‑CCTTTATGCGTTTTTACGCCCGCAGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGttt < 1:471657/239‑1 (MQ=255)
tttATGCGGGTTTCCGCCCGAGGGGGCG‑CGGAACACTGCCCCCTGCCAAGCCCTACCAATTGGGCGTAACCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGAt < 1:652168/239‑1 (MQ=255)
aTGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTg > 1:892991/1‑238 (MQ=255)
tttACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACCGATTGACTtcag > 1:1028870/1‑238 (MQ=255)
tttACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGCTTGACTtcag > 1:174697/1‑238 (MQ=255)
cggaGTGGCA‑CGGCACATCCCCCCGTCGCAAGCCATACCAATTGGGCGTAATCCGTTGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATgg < 1:37140/236‑1 (MQ=255)
tatCCCCTCCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCGGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCCAGCAgg < 1:433181/239‑1 (MQ=255)
atCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGGAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGGGCCAGCCCCGCAggg > 2:804551/1‑239 (MQ=255)
|
GCGCCGGTAAGGCCAAGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAAT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCCAGCAGGG > NC_000913/646974‑647445
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
