Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F3 I0 R1 33 159.1 2832088 95.5% 2704644 271.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,004,824 A→C 55.3% N321K (AAT→AAG)  ygeV ← putative sigma‑54‑interacting transcriptional activator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,004,8240AC55.3% 89.6 / 223.1 165N321K (AAT→AAG) ygeVputative sigma‑54‑interacting transcriptional activator
Reads supporting (aligned to +/- strand):  ref base A (35/39);  new base C (48/43);  total (83/82)
Fisher's exact test for biased strand distribution p-value = 5.33e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01

Only 100 of 165 total aligned reads displayed.

AATTCTGATTAGTTGCAGAAATGATGCGAATGTCGACTTGTATTGGGCTACTGGCACCAATCGGCAGAATTTCACGTGCCTCAATAGCGCGCAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTATGCAATTGACCAATGATTAATTCACTTTTATCGTCCCATGA  >  NC_000913/3004538‑3005111
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                               
            ttGCAGAAATGATGCGAATGTCGACTTGTATTGGGCTACTGGCACCAATCGGCAGAATTTCACGTGCCTCAATAGCGCGCAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTTGTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCt                                                                                                                                                                                                                                                                                   <  2:519934/289‑1 (MQ=255)
             tGCAGAAATGATGCGAATGTCGACTTGTATTGGGCTACTGGCACCAATCGGCAGAATTTCACGTGCCTCAATAGCGCGCAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCATAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTc                                                                                                                                                                                                                                                                                  <  2:1412649/289‑1 (MQ=255)
                   aaTGATGCGAATGTCGACTTGTATTGGGCTACTGGCACCAATCGGCAGAATTTCACGTGCCTCAATAGCGCGCAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACtt                                                                                                                                                                                                                                                                             <  1:1314143/288‑1 (MQ=255)
                         gCGAATGTCGACTTGTATTGGGCTACTGGCACCAATTGGCAGAATTTCATGTGCCTCAATAGCGCGCAGTAATTTAGCCTGCAACATTACTGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGAtt                                                                                                                                                                                                                                                                      >  2:838581/1‑289 (MQ=255)
                                     ttGTATTGGGCTACTGGCACCAATCGGCAGAATTTCACGTGCCTCAATAGCGCGCAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCATATTCGCCTCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGcgacg                                                                                                                                                                                                                                                          <  1:739226/289‑1 (MQ=255)
                                      tGTATTGGTCTACTGGCACCAACCGGCGAAATTAGAGATGCCACAATGGCCAGCAGTAATTTGGCCTCCAAGATTAATGGCATATCACCAATTTCATCGAGAAACGGCGTGCCCGTATTCGCCGCCTCAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCTTAAGCTGCTCCTGAATCGCGGCACAGTTGATAGCAATAACGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGcgac                                                                                                                                                                                                                                                           <  2:614895/287‑1 (MQ=255)
                                                           aTCGGCAGAATTTCACGTGCCTCAATAGCGCGCAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCttt                                                                                                                                                                                                                                    <  1:1237833/289‑1 (MQ=255)
                                                                    aTTTCACGTGCCTCAATAGCGCGCAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAACGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCaccaac                                                                                                                                                                                                                             <  2:135236/287‑1 (MQ=255)
                                                                                  aaTAGCGCGCAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCCACCCTGTTTTACCATTGGCAGAAGCGCCAGTAAATGCACCTTTAACATACCCGCACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGCTTGCACGGGCGACGCCTTNNNNACCCGTTCCGCttg                                                                                                                                                                                                                                    >  2:1157297/1‑265 (MQ=255)
                                                                                       cgcgcAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGACTCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATgg                                                                                                                                                                                                           >  2:584806/1‑286 (MQ=255)
                                                                                        ggtcAGTACTTTAGGCTGGAACATTAATGGGATATCAGCTATTTCATCGAGAAACAGCGGGCCCGTATTCGCCGCCTGAATCAACCCCGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCT‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCt                                                                                                                                                                                                        <  2:1115076/285‑1 (MQ=255)
                                                                                         cgcAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTgg                                                                                                                                                                                                      >  1:845207/1‑289 (MQ=255)
                                                                                         cgcAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACtt                                                                                                                                                                                                                                                                             <  1:811649/218‑1 (MQ=255)
                                                                                         cgcAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTgg                                                                                                                                                                                                      >  1:256260/1‑289 (MQ=255)
                                                                                          gcAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGCGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTggg                                                                                                                                                                                                     <  1:1152271/289‑1 (MQ=255)
                                                                                           cAGTAATTTAGCCTGCAAAATTAATTGCATTTCACCTATTTCACCGGAAAACAGCGTGCCAGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCTGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTggg                                                                                                                                                                                                     <  2:1352636/288‑1 (MQ=255)
                                                                                               aaTTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCaa                                                                                                                                                                                                <  1:1351342/289‑1 (MQ=255)
                                                                                               aaTTTAGCCTGCAACATTAATGGCATATCACCTAGTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGTAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTAGGTGCaa                                                                                                                                                                                                <  1:1360/289‑1 (MQ=255)
                                                                                                aTTTCGCCTGAAACATGAATGGCATATCACCGATTTCATCGAGAAACAGCGTGCCCTTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCaccaac                                                                                                                                                                                                                             <  2:1369193/259‑1 (MQ=255)
                                                                                                      ccTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCt                                                                                                                                                                                         >  1:410576/1‑289 (MQ=255)
                                                                                                      ccTGCAACATTAATGGCATATAACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAAAATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGAGGCCCAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCCCAACTTATGGATTGCACGGGCGACGACTTCTTTACTCGTGCCGCTTTCCCCAACCACCATAAAGCTTGATGGGCTGGGGCCAATATGGCt                                                                                                                                                                                         >  2:1360/1‑289 (MQ=255)
                                                                                                        tGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTaa                                                                                                                                                                                       >  2:235773/1‑289 (MQ=255)
                                                                                                          cAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATg                                                                                                                                                                                     >  2:1275125/1‑289 (MQ=255)
                                                                                                                tAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGt                                                                                                                                                                               >  1:1064947/1‑289 (MQ=255)
                                                                                                                   tGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGtttt                                                                                                                                                                            <  1:658995/289‑1 (MQ=255)
                                                                                                                       atatCACCTATTTCATCGGGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAAt                                                                                                                                                                         <  2:1057173/288‑1 (MQ=255)
                                                                                                                             ccTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCa                                                                                                                                                                  <  2:320242/289‑1 (MQ=255)
                                                                                                                                 tttCATCGAGAAACAGCGTGCCCGTATTCGCCTCCTGAATCAACCCTGATGTACCGTTGGCAGAAGCGCCAGTAAATGCACCTATAACATAACCGAACAGTTCG‑‑CACTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCGTCCGCTCAACTTATGGATTGCACGGGCGACGAATTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCt                                                                                                                                                                                                        <  2:126347/247‑1 (MQ=255)
                                                                                                                                 tttCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAac                                                                                                                                                              >  1:199470/1‑289 (MQ=255)
                                                                                                                                     aTCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACgg                                                                                                                                                          <  1:1135622/289‑1 (MQ=255)
                                                                                                                                      tCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACgg                                                                                                                                                          >  2:1191481/1‑288 (MQ=255)
                                                                                                                                          gaAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACt                                                                                                                                                      <  1:1191481/288‑1 (MQ=255)
                                                                                                                                           aaaCAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCCACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTc                                                                                                                                                     >  2:630128/1‑288 (MQ=255)
                                                                                                                                           aaaCAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTc                                                                                                                                                     >  1:180959/1‑288 (MQ=255)
                                                                                                                                            aaCAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCg                                                                                                                                                    <  2:1071260/288‑1 (MQ=255)
                                                                                                                                                   tGCCCGTCTTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGccaacc                                                                                                                                              >  2:995357/1‑287 (MQ=255)
                                                                                                                                                   tGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGccaaccaa                                                                                                                                            >  1:949173/1‑289 (MQ=255)
                                                                                                                                                    acccGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGccaaccaa                                                                                                                                            <  2:761309/287‑1 (MQ=255)
                                                                                                                                                     cccGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACtt                                                                                                                                                                                                                                                                             >  1:1011698/1‑158 (MQ=255)
                                                                                                                                                       cGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATACCGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGt                                                                                                                                        <  1:838581/289‑1 (MQ=255)
                                                                                                                                                        gTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGtt                                                                                                                                       <  1:977955/289‑1 (MQ=255)
                                                                                                                                                         tATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCCTACCGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATaa                                                                                                                                                               >  1:286163/1‑264 (MQ=255)
                                                                                                                                                         tATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTACGGAGTCGTTTTAATTGCCGCATACAACGGCACTCGCCAACCAATTGTTc                                                                                                                                      >  2:623162/1‑289 (MQ=255)
                                                                                                                                                          aTTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCGCTCTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGtt                                                                                                                                       <  1:1105787/289‑1 (MQ=255)
                                                                                                                                                          aTTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCa                                                                                                                                     <  1:630128/289‑1 (MQ=255)
                                                                                                                                                          aTTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCa                                                                                                                                     <  1:712021/289‑1 (MQ=255)
                                                                                                                                                             cgccgcCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAata                                                                                                                                  >  2:371779/1‑289 (MQ=255)
                                                                                                                                                                cgccTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGc                                                                                                                               <  1:584806/289‑1 (MQ=255)
                                                                                                                                                                cgccTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGc                                                                                                                               >  1:155941/1‑289 (MQ=255)
                                                                                                                                                                cgccTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGc                                                                                                                               >  2:764053/1‑289 (MQ=255)
                                                                                                                                                                   cTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCTCTTTCACCAAccacca                                                                                                                                                                                                                        >  1:118319/1‑197 (MQ=255)
                                                                                                                                                                   cTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAAccacca                                                                                                                                                                                                                        <  2:118319/197‑1 (MQ=255)
                                                                                                                                                                         cAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTtcatca                                                                                                                      <  2:845207/289‑1 (MQ=255)
                                                                                                                                                                            cccTGTTTTACCGGTGGCAGAATCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTCTGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGt                                                                                                                   <  1:1406165/289‑1 (MQ=255)
                                                                                                                                                                                gTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCa                                                                                                                                                        <  1:352010/248‑1 (MQ=255)
                                                                                                                                                                                gTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCa                                                                                                                                                        >  2:352010/1‑248 (MQ=255)
                                                                                                                                                                                gTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGATCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACTGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGtcaat                                                                                                               >  1:618793/1‑285 (MQ=255)
                                                                                                                                                                                           ggCAGAAGGGCCAGTAAATGCACCTTTAACATAACCGAACGGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAGTAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGCGCAATCCGGCTAATGAGCCGTTTTAATTGCCGAATAACACGGCCCTCGCCAACCAATTGTTCAATATGCGGTTAATGCGGTGCATTTGCTACAGaa                                                                                                    >  2:562034/1‑289 (MQ=255)
                                                                                                                                                                                                     ccAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATAAGGTGCATTTGCTACATCAAAACTGGTAt                                                                                          >  1:488700/1‑289 (MQ=255)
                                                                                                                                                                                                                         taaaccagccAGTTCG‑‑CTCGCCAGAAGCTGCTCCGGAATCTCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCAGCTCAACTTATGGATAGCACGTGCTACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGTTGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCAtt                                                                      <  2:113481/280‑1 (MQ=255)
                                                                                                                                                                                                                            aCCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTc                                                                                                                                                                                                                                                                                  <  1:1365368/82‑1 (MQ=255)
                                                                                                                                                                                                                            aCCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTtcat                                                                                                                        <  1:1393324/236‑1 (MQ=255)
                                                                                                                                                                                                                            aCCGAACAGTTCG‑‑CTCCCCAGAAGCTGCTACGGAATCCCGGAACAGTTGGTAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTTTGTATTTAACGGGCGACGACGTCTTTGCCCGTGCCGCTTTCATCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGTTAATGAGTCGTCTTAATTGCCCCATAACCCGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGTATGGGCAAACGCCAtttac                                                                   >  2:173127/1‑286 (MQ=255)
                                                                                                                                                                                                                             ccGAACAGTTCG‑‑CTCTCCAGAGGCGGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCGTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGc                                                                                                                               <  2:18986/228‑1 (MQ=255)
                                                                                                                                                                                                                                aaCAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAaata                                                               >  1:665205/1‑289 (MQ=255)
                                                                                                                                                                                                                                  cAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCACTACGCATAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATGGTTCAATATTCGGTTCATCCGGTTCATTGGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAaataat                                                             >  2:171722/1‑289 (MQ=255)
                                                                                                                                                                                                                                     ttCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGTGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGt                                                          >  2:65795/1‑289 (MQ=255)
                                                                                                                                                                                                                                     ttCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGt                                                          >  1:557696/1‑289 (MQ=255)
                                                                                                                                                                                                                                     ttCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGt                                                          <  2:949173/289‑1 (MQ=255)
                                                                                                                                                                                                                                     ttCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGt                                                          >  2:548672/1‑289 (MQ=255)
                                                                                                                                                                                                                                     ttCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACCCGCCAACCAATTGTTCAATATTCGGTTCATCCGGTGCATTTGCTACCGACAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATCAttc                                                           >  2:684412/1‑287 (MQ=255)
                                                                                                                                                                                                                                      tCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGt                                                          <  1:576881/288‑1 (MQ=255)
                                                                                                                                                                                                                                       cG‑‑CTCTCTAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCg                                                        >  1:1742/1‑289 (MQ=255)
                                                                                                                                                                                                                                       cG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAATAATAATTGTCg                                                        >  1:656498/1‑289 (MQ=255)
                                                                                                                                                                                                                                       cG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCg                                                        >  1:1049773/1‑289 (MQ=255)
                                                                                                                                                                                                                                             ctcCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGccc                                                    <  1:99746/289‑1 (MQ=255)
                                                                                                                                                                                                                                              tcCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCt                                                   <  2:1064947/289‑1 (MQ=255)
                                                                                                                                                                                                                                                cAGAAGCTGCTCCGGAATCGCAGCACGATTGATAGCATTAAAGGGTTTCTTCCTTCTTCCGCTCAACTTATGGATTGCACGAGCGACGACTTCTTTACCCGTGCCGCGTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACTCGGCACTCGCCAACCAATTGTTCAATATGCTGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGa                                                 <  2:50661/289‑1 (MQ=255)
                                                                                                                                                                                                                                                      ctgctCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTa                                           >  2:1055743/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        gctCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCa                                                                                                                                                                                                                                                                   >  2:603234/1‑71 (MQ=255)
                                                                                                                                                                                                                                                        gctCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTAt                                          >  2:244547/1‑288 (MQ=255)
                                                                                                                                                                                                                                                        gctCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTAt                                          >  1:284615/1‑288 (MQ=255)
                                                                                                                                                                                                                                                        gctCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCaccaac                                                                                                                                                                                                                             >  1:1070521/1‑109 (MQ=255)
                                                                                                                                                                                                                                                             ggAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTATGCAAtt                                    <  1:585561/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                  cgcgGCACAGTTGATAGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGATTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTATGCAATTGACCa                               <  1:1311202/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             tGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTATGCAATTGACCAATGATTAAtt                     <  1:1275125/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 aGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCgg                                                                                                                             >  2:1372013/1‑180 (MQ=255)
                                                                                                                                                                                                                                                                                 aGCAATAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCgg                                                                                                                             <  1:1372013/180‑1 (MQ=255)
                                                                                                                                                                                                                                                                                      tAAAGGGTTTCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCCCTCGCTAACCAATTGTTCAATATGCGGTTCATCAGGTTGATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATAAAAAATAATTGTCGGCCCTGAATGTTATGCACTTGACCAATGATTAATTCCCtttttt            >  2:1198031/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                                      tAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGcca                                                                                                                                                 >  1:955369/1‑155 (MQ=255)
                                                                                                                                                                                                                                                                                      tAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGcca                                                                                                                                                 <  2:955369/155‑1 (MQ=255)
                                                                                                                                                                                                                                                                                      tAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTg                                                                                                            >  1:625471/1‑192 (MQ=255)
                                                                                                                                                                                                                                                                                      tAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTATGCAATTGACCAATGATTAATTCACTTTTATc           >  1:910830/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                      tAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCAGCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGTTGAAACGCCAATAAAAATAATTATCGGCTCTGAATGTTATGCAATTGACTCATGATTAATTCACTTTTAtt           >  2:456995/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                      tAAAGGGCTTATTCCGCCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACTATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGACTAAAACGGCAATCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGCAAAACTGGTATGCGATTGGTGAACCGGCATTAAAAATAATTGTCGGCCATGATTGTTTTg                                         >  2:669040/1‑259 (MQ=255)
                                                                                                                                                                                                                                                                                             tttCTTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTATGCAATTGACCAATGATTAATTCACTTTTATCGTCCCa     <  1:235773/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                              ttATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCg                                                        >  1:926483/1‑236 (MQ=255)
                                                                                                                                                                                                                                                                                              ttATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCg                                                        <  2:926483/236‑1 (MQ=255)
                                                                                                                                                                                                                                                                                              ttATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTATGCAATTGACCAATGATTAATTCACTTTTATCGTCCCATg   <  1:548672/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                               tATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTATGCAATTTACCAATGATTAATTCACTTTTATCGTCCCATGa  >  1:309867/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                               
AATTCTGATTAGTTGCAGAAATGATGCGAATGTCGACTTGTATTGGGCTACTGGCACCAATCGGCAGAATTTCACGTGCCTCAATAGCGCGCAGTAATTTAGCCTGCAACATTAATGGCATATCACCTATTTCATCGAGAAACAGCGTGCCCGTATTCGCCGCCTGAATCAACCCTGTTTTACCGTTGGCAGAAGCGCCAGTAAATGCACCTTTAACATAACCGAACAGTTCG‑‑CTCTCCAGAAGCTGCTCCGGAATCGCGGCACAGTTGATAGCAATAAAGGGTTTATTCCGTCTTCCGCTCAACTTATGGATTGCACGGGCGACGACTTCTTTACCCGTGCCGCTTTCACCAACCACCATAACGCTGGATGGGCTGGGTGCAATACGGCTAATGAGTCGTTTTAATTGCCGCATAACACGGCACTCGCCAACCAATTGTTCAATATGCGGTTCATCAGGTGCATTTGCTACAGAAAAACTGGTATGCGATTGGTGAAACGCCATTAAAAATAATTGTCGGCCCTGAATGTTATGCAATTGACCAATGATTAATTCACTTTTATCGTCCCATGA  >  NC_000913/3004538‑3005111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A