Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I0 R1 63 124.6 2504412 97.6% 2444306 226.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,206,477 T→A 18.8% S5R (AGT→AGA) ‡ ttdA → L‑tartrate dehydratase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4770TA18.8% 164.7 / 12.3 104S5R (AGT→AGA) ‡ttdAL‑tartrate dehydratase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base T (24/48);  new base A (7/12);  total (44/60)
Fisher's exact test for biased strand distribution p-value = 7.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 106 total aligned reads displayed.

CAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTA  >  NC_000913/3206243‑3206706
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                          
cAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGtaat                                                                                                                                                                                                                                         <  2:363801/238‑1 (MQ=255)
 aGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATTGG‑GTTGTCATTGTGTGGGGAAGgaataa                                                                                                                                                                                                                                       >  1:522800/1‑239 (MQ=255)
      ttCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AAc                                                                                                                                                                                                                                 <  2:864547/239‑1 (MQ=255)
            aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAgg                                                                                                                                                                                                                              <  1:75802/236‑1 (MQ=255)
            aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAgg                                                                                                                                                                                                                              <  2:1186004/236‑1 (MQ=255)
            aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAgg                                                                                                                                                                                                                              <  1:220231/236‑1 (MQ=255)
              cGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTg                                                                                                                                                                                                                         <  2:118861/239‑1 (MQ=255)
                ttAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAAATGTA‑GTTTGCCTGGTGAGGGGAAGTAATAAAC‑AACAGGGAGGGaa                                                                                                                                                                                                                       >  1:459149/1‑239 (MQ=255)
                ttAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAACAATACAAAAACATGA‑GTTGCCCTGATGAGCGGAAAGAACAAGC‑cacaagaaaggaa                                                                                                                                                                                                                       >  1:194187/1‑230 (MQ=255)
                 tAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGaa                                                                                                                                                                                                                       <  2:142378/238‑1 (MQ=255)
                 tAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGaa                                                                                                                                                                                                                       <  1:986923/238‑1 (MQ=255)
                  aaTTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACGGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATa                                                                                                                                                                                                                     <  1:390139/239‑1 (MQ=255)
                               tgtgATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAgaga                                                                                                                                                                                                        <  2:297507/238‑1 (MQ=255)
                                 tgATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGGGAATTTTTTCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAATAATAAAC‑AAAAGGCAGTGAATAAGT‑TGACAGAGATT‑g                                                                                                                                                                                                    >  1:487376/1‑239 (MQ=255)
                                        cgcAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCTTACAAAAACAAAAAACGGG‑GTTGGCATGGTAGGCGAAAAGAATAAAG‑AAAAAGAAGTGCATAAAT‑TGACAAAGAGT‑GTTGCT‑aa                                                                                                                                                                                            >  1:985118/1‑239 (MQ=255)
                                        cgcAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCCATAAATACAAAAAATGGA‑GTTGGCATGATGTGGGGAAGATATAAAC‑AACAAGCCGGGGATAAAT‑TTATACAGATT‑TTTGCT‑aa                                                                                                                                                                                            >  1:43561/1‑239 (MQ=255)
                                               tATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAAAACAAAAAAAAGA‑GGTGTCATGATGAGAGGAAAGAATAAAC‑AAAAGGAAAGGGATAAAA‑TGACAGAGAAT‑GGTGCT‑acaatttt                                                                                                                                                                                      >  1:433037/1‑231 (MQ=255)
                                                   tCGAAAAACATTGCCATTCCCGGCTCTGGCGAAATTTTCATTCTTATTTTCGCGTTGATTCACAAACTGTTAATTACATATTCACGGTGGAAAAAAATAAAAAACCAC‑ATTTTTAGTGGTAGTTTGGGGGGGTAAATTTTTCCAGAAAAATAAAAAAACGGGA‑GTTGCCATGATGAGCAAAATTAAAAAGC‑AACAGGCAGTAAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCa                                                                                                                                                                                 <  2:277728/239‑1 (MQ=255)
                                                       aaaaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAACATGA‑GTTGGCATGATGAGCGGAAGAAAAAAAA‑AAAAAGCAAGGAAAAAAA‑TGACAGAGAAT‑GTTGCT‑AAATTTACCCCCATGAt                                                                                                                                                                             >  1:987055/1‑239 (MQ=255)
                                                         aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAAAAAAAAAAAAAATAGA‑GTTTGCATGATGAGGGAGAGAAATAAAA‑CAAACGCAGAGAAAAAGTATAACA‑AGATT‑GTCACC‑AACTTTATCGCCCTAAttt                                                                                                                                                                           >  2:1130141/1‑239 (MQ=255)
                                                         aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGG‑AGTTTGTGGCGGTGAATTTTTTTCAACAAATACAAAAAATGGA‑GGTGTCAAGATGAGGGGAAGTAATAAGA‑AACAAGCAGTGAATAAAT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGAtt                                                                                                                                                                            >  1:1217691/1‑237 (MQ=255)
                                                           cATCGCCATTCCCTGCTCTGGCGCAATATCCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCAGGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGGGGCGGTAAATTTTTCCAGACAAATAAAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AATTTTACCGCCATGATTTCt                                                                                                                                                                         <  1:970075/239‑1 (MQ=255)
                                                                        tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTTAATTTTTTCTGACAAATAAAAAAAATTGA‑GTTGCCCCGTTGAGCGAAAGGAATAAGA‑AACAGGCACTGAATAAAA‑TGACAAAGATT‑TTCGCT‑ACCTTTACCCCCATGCTTTCTTCCCGGATTccct                                                                                                                                                            >  1:73837/1‑237 (MQ=255)
                                                                        tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTAGACAAAAAAAAAAAATGGAGGTTGCCTTG‑TGGGGGGAAGGAAAAAAA‑AAAAGGCAATGAATAAGT‑TGATAAAGAGT‑TTCGCT‑TAATTTACCGCCATGATTTTTACACGacaggctc                                                                                                                                                            >  2:624652/1‑232 (MQ=255)
                                                                        tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAg                                                                                                                                                                                                                   <  1:590123/187‑1 (MQ=255)
                                                                          ctttGGCGCAATATTCATTCTTATTTTCGCGTTAATTCACGACCTGTTAATTACATATTCACGGTGACAAAAAATAAAAAACCAC‑ATTTTAAGTGG‑AGTTTGTGGCGGTAAATTTTTCCAAAAAAATAAAAAAACTGGA‑GTTGCCATGATGAGAGAAAGTAATAACC‑AACAGGCAGTAAATAAGT‑TGACAGAGATG‑GCCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                                                                                                                                                         <  2:1217691/236‑1 (MQ=255)
                                                                          ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAAAAAAACAAAAAATGGA‑GTTGCCATGATGAGGGGAAGAAATAAAA‑AAAAAGCAAGGAAAAAAA‑AGAGAGAGAAT‑GGCGCG‑AAAATTACAGCGATGAATTTTACCCGaaagacagag                                                                                                                                                          >  2:1183843/1‑231 (MQ=255)
                                                                           tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCAAAAGAAATAAGC‑AACAGGCAGTGAATAATT‑TGACAGAGATT‑GTCGTT‑AACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                                                                                                                                                         <  1:826841/239‑1 (MQ=255)
                                                                             tGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGGAAATTTCCCGTAAAATACAAAAAATTGT‑GGTGGTCAGATGAGGAAAAGAAATAAAC‑AAAAGGCAGTGAATTAGA‑TGACAGAAAAT‑GTCCCT‑AACTTTTTCGCCCTGCTTTCTTACCGTATACCttattaa                                                                                                                                                       >  1:800471/1‑236 (MQ=255)
                                                                               gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAAAAAAAAAAAAAATGGA‑GTTGCCATGGTGGGCGGAAATAATAAAA‑AAAAAGCAGTTAATAAGT‑TGGCAGAGAAT‑GTTGCT‑AAATTTTACCCCATAATTTTTAACCCAAATCCtggtggagg                                                                                                                                                     >  1:431741/1‑235 (MQ=255)
                                                                               gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAAAAAAAAAAAAACTGGA‑GTTGCCCATATGGGCGGAAGGAATAAAA‑AACAAGAAAGGAAAAAAG‑TTAAAAAAATT‑GTTGGTAAACTTTCCGCCCAGGATTTTTACCCGATTGccgatagagg                                                                                                                                                      >  1:581942/1‑231 (MQ=255)
                                                                               gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAATACAAAAAATGGG‑GGTGTCATGATGAGCTGAAAAAATAAAC‑AAAAAGCAGAGAATAAGT‑TGACAGAGATT‑GTCGGT‑AACTTTACACCCCTGATTTTTACCCCAATGCCTGATGACgg                                                                                                                                                     >  1:713440/1‑238 (MQ=255)
                                                                               gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGAGGATTTTTTCAGACAAAAAAAAAAAATGGA‑GTTGGCATGTTGAGCGAAAGTAATAAAC‑AACCAGCAGGGAATAAAT‑TGACAGAGAAT‑GTCGCT‑AAATTTAACGCCCTGATTTCTAACCGAATGCCtgattgagt                                                                                                                                                     >  1:102849/1‑234 (MQ=255)
                                                                                cgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTTTTAATTACATATTCACGGTGGCAAAAAATAAAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGGGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTAc                                                                                                                                                                                      <  1:572396/205‑1 (MQ=255)
                                                                                cacAATATTCATTCTTATTTTCGCGTTGATACACGAACTTTTAATTACATATTCACGGTGGAAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGGGGCGGTGAATTTTTCCAGACAAATACAAAAACGGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgt                                                                                                                                                     <  2:863678/236‑1 (MQ=255)
                                                                                cacAAAATTCATTCTTATTTTGGCGTTAATTCACGAACTGTTAATTACATAGTCAGGGGGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGAAGTTGGGGGGGGTGAATTTTTCCACAAAAATACAAAATCTGGT‑GTTCAGAAAGAGACGGAAAAAAACAAGC‑AACAGGTGGAGAATAAGA‑AGAAAAAGATT‑GTGGCA‑ATATTTACCGCCATGATTTCTACCCGAATGCCTGATGACgt                                                                                                                                                     <  2:796575/236‑1 (MQ=255)
                                                                                caaaaTATCCATGCTTATTTCGACTTTGATGCAGCAATTGTAAATGACATTTTCACAGTGAAAAAAAAAATAAAACCAC‑ATTGAGAGTGGTAGTTGTGGGCGGTAAATTTTTCAAAACAAAAAAAAAAAAAGGA‑TTTGCGATGATGATAAAAAGAAATAAGA‑AACAGGCGGTAAATAATT‑GGACAGGGTTT‑GTCCCA‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgt                                                                                                                                                     <  2:680323/235‑1 (MQ=255)
                                                                                 gcAATATTCATTCTTATTTTCGCTTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCCAGAAAAATACAAAAACTGGA‑GTTGCCATGATGAGCAAAAGTAATAAGC‑AACAGGCAGTAAATAAGT‑TGACAGAGATT‑GTCGCT‑AATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgtg                                                                                                                                                    <  1:292805/238‑1 (MQ=255)
                                                                                 aaaaTATTAATTCTTATTTTGGCGTTGATTCACGATTTGTTAATTACAGATCCAGGGTGGAAAAAAATAAAAAACAAC‑ATTTTGAGTGGTAGTTTGTGGCGGTGAATTTTCCCAGACAAATACAAAAACAGGA‑GTTGCTATGAGGAGCGAAATAAATAAGC‑ACCGGGAAGAGAATAAGT‑TGACAGATATT‑GTCGTT‑AACTTTCCCGCCATGATTTCTACCCGAATGCCTGATGACgtg                                                                                                                                                    <  1:904719/236‑1 (MQ=255)
                                                                                     tatttattTTTTTTTTCGCATTAATTCACTAAATTTTAATAACATATACAGGGTGGAAAAAAATAAAAATCCAG‑ATTATAGATGGGTTTTGGGGGGAGTGATTTTTTGCAGAGAAATAAAAATAGGGGG‑GTTGCGTAGAGGAGTAAAAGTAATAAGA‑AACGGGGTGTAGATAGGT‑AGAAAAGAATT‑GTCGGT‑AGCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                               <  2:880155/239‑1 (MQ=255)
                                                                                     tatTCATTTTTAGTTTCGCGTTGATTCACGAACTGTAAATTACATATTCGCGGGGGCAAAAAATATAAAACCAC‑ATTTTTAGTGTTGGTTTGGGGCGGTAAATTTTCCCAGACAAAAACAAAAACTGGA‑GTTGCCATAATGGGGGAAAATAATAAGA‑AACGGGCAGTAAATAAGT‑TGACAGAGTTT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                               <  1:1115247/239‑1 (MQ=255)
                                                                                     aattcattcTTATTTTCGCGTGGATTCATGAACTGTTAAGTACAGATTCACGGGGGCAAAAAATATAAACCCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCCAGACAAAGACAAAAACTGGA‑GTTGCCTTGATGAGCGAAAGTAATAAGC‑ACCAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGTT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                               <  1:911028/238‑1 (MQ=255)
                                                                                      attcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAgg                                                                                                                                                                                                                              <  1:872637/162‑1 (MQ=255)
                                                                                       ttcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGA‑GTTTCCATGATTGACGAAAGTAATAAAG‑AACAGGCAATGAATAAGT‑TGACAGAGATT‑GTCCCT‑AACTTTACCCCCCTGATTTTTTTCCGCAAGCATTCTGACGGGGTGGATa                                                                                                                                             >  1:769192/1‑239 (MQ=255)
                                                                                              ttATTTTCGCGTTGATTCACGAACTTTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAAAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaa                                                                                                                                      <  1:939662/239‑1 (MQ=255)
                                                                                               tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTAAAAAAAAAAAAAAAATGGA‑GTTGTTATTATTAGCGGAAATAAAAAAC‑AAAAAGGAGTGAAAAAAT‑TGACAGAGATT‑GTCGCT‑AAAATTACACACATCATTTTTAAACGAATGCCTGATGACATGTGGGGTAAAACaaaa                                                                                                                                     >  2:461981/1‑239 (MQ=255)
                                                                                               tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCAACAAAAACAAAAAATTGA‑GGTGTCCTTGTGAGGGGAAAGAATAAAA‑CACAAGCAGTGGATAAAT‑TGACAGAGATT‑GTCGCT‑AAATTTACCGCCACGATTTCTTCCCCAATGCCTGATGGCGTGGGGGATTAACTaaaa                                                                                                                                     >  2:680575/1‑239 (MQ=255)
                                                                                                 ttttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTCGACAAAAACAAAAAATGGA‑GTTGCCATGATGAGCGAAAGGAATAAAC‑AAAAGGCAATGAATAAAT‑TGACAGAGAAT‑GTCGCT‑AACTTTACCGCCATGATTTTTTCCCGAAAGCCTGATGACGAGGTGGGtaaaataaaaaa                                                                                                                                   >  1:1095181/1‑237 (MQ=255)
                                                                                                 ttttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAATAAAAAAAATGGA‑GGTGCCCTGATGAGCGGGAGTAATAAGC‑AACACGCAGTGAATAAAG‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTTTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaaaa                                                                                                                                   >  1:866702/1‑237 (MQ=255)
                                                                                                      gcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAAAACAAAAAATGGA‑GTTGTCATGATGAGCGAAAGTAATAAAC‑AAAAGGCAGAGAATAAGA‑TGACAGAGAGT‑GTTGCT‑AAATTTAACGCCATGATTTTTACCCCAATGCCTGATGACGTGGGGGGTAAACTAAAAAAGCTaa                                                                                                                              >  1:307624/1‑239 (MQ=255)
                                                                                                        gTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAAAACAAAAAATGGA‑GTTTGCATGATGAGGGGAAGTAATAAAC‑AAAAGGCAGGGAAAAAGA‑TGACAGAGATT‑GTCGGC‑AAATTTTCCGCCCTGAATTTTACCCCAAAACCTTGTGTCGTGGGGGGTAAACTTAAACAACTAAAg                                                                                                                            >  2:939662/1‑239 (MQ=255)
                                                                                                                 cGAACTTTAAATAACATATTCGCGGTGGAAAAAAATATAAAACCAC‑ATTTTTAGTGGTATTTTGTGGCGGTAAATTTTTCCAGAAAAATAAAAAAACGGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGaa                                                                                                                  <  2:307624/239‑1 (MQ=255)
                                                                                                                      tGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAATAAAAAAAAATGA‑GGTTCCATGATGTGCGAAAGAAAAAAAC‑AACAAGCAGTGAAAAAGT‑TGGCAAAGATT‑TTCGCT‑AACTTTATCCCCATGATTTTTACCCGAAAGCCTGATGTAGTGGTGGGTAAAAAAAAACAGCTAAAAAAT‑GCCGcaaact                                                                                                              >  2:70247/1‑235 (MQ=255)
                                                                                                                        ttAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGGGAAATTTTTCAAACAAATAAAAAAACTGGA‑GTTTGCCTGGTGGGCGACAGTAATAAGC‑AACAGGCAATGAATAAGT‑TGACAGAGATT‑GTCGCC‑CACTTTAACACCACTAATTTTACCCGAACACCTGATTTCGTGGTGGGTAAACTAAAAAAGCCCACAGAT‑GCCGAAAcgccc                                                                                                            >  2:113577/1‑235 (MQ=255)
                                                                                                                        ttAATTACATATTCACGGTGGAAAAAAAAAAAAAACAAC‑ATTTTTAGTGGTAGTTGGTGGGGGGGAATTTTTCAAAAAAAATAAAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTAAATAAGT‑TAACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                                                                                                                                                         <  2:511277/194‑1 (MQ=255)
                                                                                                                          aaTTACATATTCAGGGTGACAAAAAATAAAAAACCAA‑ATTTTTAGTGGTAGTTTGTGGGGGTGAATTTTTCCAGAAAAATACAAAAACGGGA‑GTTGCCATGATGAGCGAAAGTAAAAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGtcgtcg                                                                                                         <  2:522800/239‑1 (MQ=255)
                                                                                                                          aaTTACATATGCACGGTGGCAAAAAATAAAAAACCAC‑ATTTTTAGTGGTATTTTGGGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTGGCCATGATGAGCAAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGtcgtcg                                                                                                         <  1:1006830/239‑1 (MQ=255)
                                                                                                                               caaattagcGGTGGAAAAAAATATAAAACCAA‑ATTTTTAGTGGTTGTTTGTGGGGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATAATGAGCGAAAGTAATAAGC‑AACAGGCAGTAAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAGAGGAT‑GCCGAAACGTCGTCGATggg                                                                                                    <  2:599583/231‑1 (MQ=255)
                                                                                                                               aatatTCACGGGGGAAAAAAATATAAAACAAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAAAAAAAAAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATggg                                                                                                    <  2:480813/238‑1 (MQ=255)
                                                                                                                                atatTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGGGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCAAAAGTAATAAGC‑AACGGGCAGTGAATAGTT‑TGACAGAAATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                               <  1:799563/196‑1 (MQ=255)
                                                                                                                                 tatTCAGGGTGGAAAAAAATATAAAACACA‑ATTTTTAGGGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATAAAAAAACTGGA‑GTTGCCATGATGAGCAAAAGTAAAAAGC‑AACAGGCATTGAATAAGT‑TGACAGAGATT‑GTCGAT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGa                                                                                                  <  1:425040/239‑1 (MQ=255)
                                                                                                                                 tatTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTAATGGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGa                                                                                                  <  1:1130141/239‑1 (MQ=255)
                                                                                                                                 tatTCACGGGGGAAAAAAATAAAAACCCAC‑ATTTTTAGTGGTATTTTGTGGCGGTGAATTTTTCCAGAAAAAAACAAAAACTGGA‑GTTGCCATGATGAGCAAAAGTAATAAGC‑AACAGGAAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGa                                                                                                  <  1:532241/239‑1 (MQ=255)
                                                                                                                                  atTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGACAAAAACAAAAACTGGG‑GTTTCCCTGATGAGCGAAAGTAATAAAC‑AACAGGAAGAGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTAACGCCCTGATTTTTACCCCAATGCCTGATGACGGGGGGGATAAACTAAAAAAAATAAAGGATGGCCGAAA‑ATCGTCGGTggggga                                                                                                 >  1:262041/1‑237 (MQ=255)
                                                                                                                                  atTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAAATGGG‑GGTGCCATGGTGAGCGAAAGGAATAAGC‑AACAGGCAGTGAATAAAT‑TGACAGAGATT‑TTCGCT‑TACTTTTCCCCCCTGATTTCTTACCCAAAGCCTGATGACGTGGGGGGTAAACTAAAACAACTAAAAGAA‑TCCCGAACAGCGTCGGTggggga                                                                                                 >  1:232164/1‑237 (MQ=255)
                                                                                                                                  atTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAAAACAAAAAATGGA‑GTTGGCCTGATGTGGGAAATGAATAAAA‑AACAAGCAGTGAAAAAGA‑TGACAGAGAGT‑TTCGCT‑AACTTTTACGCCCTGATTTCTACCCGAATTCCTGATGACGGGGGGGGTTAAATAAAACAGATAAAAGAA‑GCCGCAACGTCCTCGCTgggggc                                                                                                 >  2:1006830/1‑237 (MQ=255)
                                                                                                                                      caggTGGAAAAAAATAAAAAACCAA‑ATTGTTATTGTTGGTTGGTGGCGGTAAATTTTTCAAAAAAAATACAAAAACTGGA‑GTTCCAATGATGAGCGAAAGAAAAAAGC‑AACAGGCGGTGAATAAGT‑GGAAAGAGATT‑TCCGTT‑AATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAAtt                                                                                             <  2:1095181/237‑1 (MQ=255)
                                                                                                                                        ggTGACAAAAAAAATAAACCCAC‑ATTTTTAGTGGTAGTGTGTGGCGGTGAATTTTTCCAGAAAAATAAAAAAACGGGA‑GTGGCCATTAGAGGCAAAAGTAATAAGC‑AACAGGCAGTAATTAAGT‑TAAAAGAGATT‑GTCGTT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                           <  1:506847/239‑1 (MQ=255)
                                                                                                                                         tgggCAAAAAATATAAACCCAC‑ATTTTTAGGGGTAGTTTGTGGCGGAGAATTTTTCAAGAAAAATAAAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTAAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                           <  2:190656/236‑1 (MQ=255)
                                                                                                                                         gtgaaaaaaaaTAAAAAACCAA‑ATTTGTAGTGGTAGGTTGTGGCGGTGAATTTTACCAAAAAAAAACAAAAAGTGGA‑GTTGCCATGATGAGCGAAAGAAATAAGC‑AACAGGCAGTGAATAAGT‑GGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                           <  2:194187/233‑1 (MQ=255)
                                                                                                                                          tGGCAAAAATAATAAAACCAC‑ATTTTTATTGTTAGTTTGTGGCGGTAAATTTTTCCAGACAAATAAAAAAACGGGA‑GTTGCCTTGATGAGCAAAATAAATAAGC‑AACAGGCAGTAAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATc                                                                                          <  1:1036074/238‑1 (MQ=255)
                                                                                                                                          tGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTAGACAAAAACAAAAACTGGA‑GGTGCCATGATGAGGGAAAATAATAAAA‑AAAAAGCAGGGAATAAGT‑TGACAGAGATT‑GTTGCT‑AACTTTTCCGCCATGATTTTTTACCCACTGGCTGATGACGTGGTGGGTAAACTAAAACAACTAAAGGAA‑GCCGAAAAGGCGCCGGTGGGGAAAAatatat                                                                                         >  2:857484/1‑237 (MQ=255)
                                                                                                                                            gCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATAAAAAAACTGGA‑GTTGCCATGATGAGCGGAAGGAATAAAC‑AACAAGCAGGGAAAAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTAACGCCAAGATTTTTAACCGAATGCCTGATGACGTGGGGGGTAAAATAAAAAAGCTAAAGGAT‑GCCGAAAACTCGGCGATGGGGGAAAATATCTa                                                                                        >  1:608616/1‑238 (MQ=255)
                                                                                                                                            gCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAAAAAAAAAAAAAATGGG‑GGTGGCATGGTGAGCGGAAGGAAAAAAA‑AAAAGGCAGGGAATAAAA‑TGAAAAAGAAT‑GTTGCT‑AACATTAACCCCACGGTTTTTTCCCCAAATCCCGATGGCGCGGGGGGTAAAATCAAAAAACCAAAAAAT‑GCCGAAAAGAGGTCGCGGGGGGGAAATATCTa                                                                                        >  2:1048868/1‑238 (MQ=255)
                                                                                                                                                aaaaaaaaaaACCAC‑ATGTTTAGTGGTAGGTTGGGGCGGGAAATTTTCCAAGAAAAATACAAAAACGGGA‑GTGGCCATGATGAGCAAAAGAAATAAAC‑ACCAGGCAGTAAATAAGT‑GAACAGAGGTT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa                                                                                   <  2:314969/239‑1 (MQ=255)
                                                                                                                                                aaaaaaTAAAGCGAC‑ATTTTTAGTGGTATTTTGTGGCGGTTAATTTTTCAAAAAAAAAACAAAAACGGGA‑GTTGCCATGATGACGGAAAGAAAAAAGC‑AACAGGCAGTGAATAATT‑TCACATAGATT‑GCCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa                                                                                   <  2:1199158/239‑1 (MQ=255)
                                                                                                                                                aaaaaaTAAAACCAC‑ATTTGTAGGGGTAGTTTGTGGCGTTAAATTTTTCCAGAAAAATACAAAAACGGGA‑GTTGCCATGATGACGAAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGTTT‑GTCGCT‑AATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa                                                                                   <  1:555187/239‑1 (MQ=255)
                                                                                                                                                aaaaTAAAAAACCAC‑ATTTTTAGGGGTAGTTTGTGGCGGTAAATTTTCCCAGAAAAAAACAAAAACGGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGTTT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa                                                                                   <  1:680575/239‑1 (MQ=255)
                                                                                                                                                  aaTATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCCAGAAAAATAAAAAAACTGGA‑GTGGCCATGATGAGCAAAAGTAATAAGC‑AACAGGCGGTAAATAAGT‑TGAAAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                 <  1:1183843/239‑1 (MQ=255)
                                                                                                                                                   aaaaaaaaACACAATTTTTAGTGGTATTTTGTGGGGTTAAATTTTTCAAAAAAAATAAAAAAACTGGA‑GTTGCCATGAGGAGCAAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑GGACAGAGATG‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                 <  2:262041/235‑1 (MQ=255)
                                                                                                                                                      taAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAAAGGG‑GTTGCCATGATGAGCGAAAGTAATAAAC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCCTGATTTCTTCCCGAATGCCTGATGAc                                                                                                                                                       >  1:478258/1‑166 (MQ=255)
                                                                                                                                                            ccgaaTTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCAAGACAAATACAACAACTGGA‑GTTGCCATGATGAGCAAAAGTAATAGGC‑ACAAGGCAGTGAATAATG‑TGACAGAAATG‑TCCGTT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGac                                                                        <  1:1177898/235‑1 (MQ=255)
                                                                                                                                                            cac‑aTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAgg                                                                                                                                                                                                                              <  2:725546/92‑1 (MQ=255)
                                                                                                                                                             ac‑aTTTTAAGTGGTAGTTTGGGGCGGAAAAGTTGTCAAGAAAAATAAAAAAACGGGA‑GGTGCAATGATGAGC‑AAAGAAAAAAACAAAGAGGTAGAAAAGAAGG‑TGACCAGGATA‑GTCGCT‑AACTTAACCGCCATGATTTCTACCCGAATGCCTGATGGCGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCAGACGATGTTCGacaa                                                                      <  2:73837/239‑1 (MQ=255)
                                                                                                                                                                          gTAGTTTGTGGCGGTGAATTTTTTCCGACAAATACAAAAAATGGA‑GTTTCCCTGATTAGCGGAAGTAATAAAC‑AACAAGCAGTGAATAAGT‑TGGCAGAGATT‑TTCGCT‑AACTTTACCGCCCTGATTTTTTCCCCAATGCCTGATGACGTGGTGGATAAACTAAAAAAACTAAAGGAT‑GCCGCAACGTCGTCGATGGGGGAAATTATCTACCATACGATGTTCGACAACATGCcaaaaac                                                          >  1:76032/1‑237 (MQ=255)
                                                                                                                                                                            attttGTGGCGGTGAATTTTCCAAGACAAAAAAAAAACCTGGA‑TTTGCAAGGATGAGGGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑GGACAGAGATT‑GTCCCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                        <  1:898436/237‑1 (MQ=255)
                                                                                                                                                                                  tgGGGGTAAATTTATCAAGAAAAAAAAAAAAACGGGG‑GATGCAATGATGAGAAAAAGTAATAAGC‑AAAAGGCAGTGAATAAGT‑TAGAGGGGATT‑GCCGTA‑AACTTGACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                   <  2:339576/238‑1 (MQ=255)
                                                                                                                                                                                                acaaGACAAATAAAAAAACTGGT‑GTTGCCATTATGAGCAAAAGTAATAAGC‑ACCAGGCGGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctgcc                                    <  1:1231645/236‑1 (MQ=255)
                                                                                                                                                                                                    gACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctgcatggc                                >  2:939611/1‑237 (MQ=255)
                                                                                                                                                                                                              aaaaCTGGA‑GGTGCAAGGAGGGGAAAAAGAAATAAGC‑AACAGGTAGATAATAAGT‑GGCAGGAGTTT‑TTGGTT‑AATTTTCCCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgg                      <  2:800471/239‑1 (MQ=255)
                                                                                                                                                                                                               aaaCTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg                     >  2:528162/1‑239 (MQ=255)
                                                                                                                                                                                                                aaCGGGA‑GTTGCCATGAGGAGCGAAAGTAATAAAC‑AACAGGCAGTGAAGAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                    <  2:43561/239‑1 (MQ=255)
                                                                                                                                                                                                                    ggA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGAt                >  2:1225605/1‑239 (MQ=255)
                                                                                                                                                                                                                     gA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGCTGTTCGACAACATGCAAAAAGGGATTGACCTGCATCGTCCTGCCTGTCAGGACACCGGGGAGAtt               >  2:1206132/1‑239 (MQ=255)
                                                                                                                                                                                                                     gA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGAtt               >  1:967787/1‑239 (MQ=255)
                                                                                                                                                                                                                            ccttaaacaGCAAAAGTAA‑AAGCAAACGGGCAGTTAAAAGTT‑TGAC‑GAGTTTGGTCGTA‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGttc         <  2:408108/231‑1 (MQ=255)
                                                                                                                                                                                                                            ccATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGt           >  2:1042344/1‑237 (MQ=255)
                                                                                                                                                                                                                                 atgaGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACATGGTGGATAAACTAAAACAGCTAAAGGCT‑GCCGAAACGTCGTCGATGCGGAAAATTATCTACCATACGATGTTCGACCACATTCAAAAAGCGATTGACTTACACCGTCCACCCTGTAAGGACACCGGGCAGTTAATGTTCTTCGt    >  2:926692/1‑239 (MQ=255)
                                                                                                                                                                                                                                  tggggtaaaGTAAAAAGC‑AAGAGGAAGTGAATAAGT‑TGACAGAGGTT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCT‑TCAGGACACCGGGGAGATTATGTTCTTCGTTa  <  2:459149/233‑1 (MQ=255)
                                                                                                                                                                                                                                      cGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg                     >  1:702435/1‑217 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                          
CAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCAC‑ATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGT‑TGACAGAGATT‑GTCGCT‑AACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAT‑GCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTA  >  NC_000913/3206243‑3206706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A