Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F108 I2 R1 19 69.6 2506112 90.8% 2275549 142.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,413,513 Δ10 bp coding (44‑53/1203 nt) ackA → acetate kinase A and propionate kinase 2

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2413513 2413522 10 76 [0] [0] 74 ackA acetate kinase A and propionate kinase 2

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 24135120 (0.000)73 (1.070) 63/280 0.0 100% coding (43/1203 nt) ackA acetate kinase A and propionate kinase 2
?NC_000913 2413523 = 0 (0.000)coding (54/1203 nt) ackA acetate kinase A and propionate kinase 2

GATK/CNVnator alignment

N/A