Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F110 I1 R1 18 47.7 1781824 90.5% 1612550 142.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,936,308 C→T V3I (GTA→ATA)  zwf ← glucose‑6‑phosphate 1‑dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,936,3080CT100.0% 185.9 / NA 59V3I (GTA→ATA) zwfglucose‑6‑phosphate 1‑dehydrogenase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (29/30);  total (29/30)

CTACGCCGATAATCCGGGTGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAA  >  NC_000913/1936170‑1936447
                                                                                                                                          |                                                                                                                                           
cTACGCCGATAATCCGGATGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGcc                                                                                                                                         <  1:417447/143‑1 (MQ=255)
cTACGCCGATAATCCGGATGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGcc                                                                                                                                         <  1:195579/143‑1 (MQ=255)
       gATAATCCGGGTGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACCGGCCTGGGCTGTTTGCGTTATCGCCagggcca                                                                                                                                  >  2:339999/1‑137 (MQ=255)
       gATAATCCGGGTGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCAt                                                                                                                                  >  2:253210/1‑143 (MQ=255)
            tCCGGGTGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTcc                                                                                                                             <  1:495332/143‑1 (MQ=255)
            tCCGGGTGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTAATAACGACAATTCAATAAATTATTACGCGTTGGTGCACCGCGCGCGCCGAAAATGAACAGGTCACGGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTcc                                                                                                                             >  1:886087/1‑143 (MQ=255)
             ccGGGTGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGAGCTGTTTGCGTTATCGCCAGCTCATTGTCCt                                                                                                                            >  1:576977/1‑143 (MQ=255)
                ggTGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTaa                                                                                                                         <  1:133684/143‑1 (MQ=255)
                     ccGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTtaa                                                                                                                    >  1:851950/1‑143 (MQ=255)
                        ggTTGAGCTGACCGGCTTTTTCCAGTCGATACACGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTtaacta                                                                                                                 <  1:28770/143‑1 (MQ=255)
                         gTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTGAGTtaactaa                                                                                                                >  1:753644/1‑143 (MQ=255)
                          ttGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTCAGTtaactaac                                                                                                               >  1:254123/1‑143 (MQ=255)
                             aGCTGACCGGCTCGTTGCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCg                                                                                                            <  2:710736/143‑1 (MQ=255)
                               cTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGt                                                                                                          >  1:180035/1‑143 (MQ=255)
                                   ccGGCGTTTTCCAGTTGAGACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGTGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACtt                                                                                                      <  2:612415/143‑1 (MQ=255)
                                    cGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTa                                                                                                     >  1:310904/1‑143 (MQ=255)
                                     ggCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTaa                                                                                                    >  1:507453/1‑143 (MQ=255)
                                     cgcttcctCCAGTTGATACAGGGAAGGCAGCAATTTCCGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTaa                                                                                                    <  1:339999/136‑1 (MQ=255)
                                         cttcccAGTTGATACAGCGAAGGCAGCAATCTACGACGCGCAAGGTCGCCCTTCGCGCCGAAAATGACCAGGTCACAGCCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCa                                                                                                <  1:673003/139‑1 (MQ=255)
                                          tttCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCAAg                                                                                               >  2:851247/1‑143 (MQ=255)
                                           ttCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAgg                                                                                              <  1:807844/143‑1 (MQ=255)
                                             ccAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGGTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGt                                                                                            >  1:509678/1‑143 (MQ=255)
                                               aGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGtat                                                                                          >  1:15958/1‑143 (MQ=255)
                                                 ttGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGGCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTGAGTTACCTAACCCGCTCCTTAAGCCAGGGgatcc                                                                                        >  2:750614/1‑141 (MQ=255)
                                                   gATACAGGGAAGGCAGCAATTGACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACtt                                                                                      <  1:437600/143‑1 (MQ=255)
                                                     tACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGt                                                                                    <  1:172427/143‑1 (MQ=255)
                                                            aaGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTCAGCCCGGGCGTCCTTGTCATTTTc                                                                             >  1:12571/1‑143 (MQ=255)
                                                            aaGGCAGCAATTTACGACGCGCAAGGTCGCCTTGCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGGCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTc                                                                             <  2:162229/143‑1 (MQ=255)
                                                            aaGGCAGCAAGGTACGACGCGCAAGGTCGCGTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTGGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTc                                                                             <  2:243214/143‑1 (MQ=255)
                                                             cggCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCTTGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCt                                                                            <  1:374068/142‑1 (MQ=255)
                                                                 agcaATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTTCCTTCTCGCCATGTCATTCTCCTTCAGTTAACTAACCCGGTCCTTAAGCCATGGAATACTTGTAATTTTCTTACg                                                                        >  2:603352/1‑143 (MQ=255)
                                                                      tttACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGACTACTTGTAATTTTCTTACGGTGCa                                                                   >  2:715871/1‑143 (MQ=255)
                                                                           gacgCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTa                                                              <  1:100413/143‑1 (MQ=255)
                                                                                gcAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCt                                                         >  2:488858/1‑143 (MQ=255)
                                                                                  aaGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCttt                                                       >  1:523449/1‑143 (MQ=255)
                                                                                   aGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATCCTCCTTAAGTTAACTAACCCGGTACTTAAGCAAGGGTATACTTGTCATTTTCTTACGGTGCACTGTACTGCtttt                                                      <  1:655931/143‑1 (MQ=255)
                                                                                     gTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTAc                                                    >  2:129018/1‑143 (MQ=255)
                                                                                     gTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTAc                                                    <  2:180035/143‑1 (MQ=255)
                                                                                      tCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACg                                                   >  2:60894/1‑143 (MQ=255)
                                                                                      tCGCCTTTCGCGCCGAAAATGACCACGTCACAGTCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACg                                                   <  1:28260/143‑1 (MQ=255)
                                                                                      tCGCCTTCCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATTGCCATGTCATTCTCCTTAAGTTATCTAACCCGGTACGTAAGCCAGAGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACg                                                   <  2:14710/143‑1 (MQ=255)
                                                                                            ttCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTg                                             >  2:156961/1‑143 (MQ=255)
                                                                                                  ccGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGaaaa                                       <  2:843174/143‑1 (MQ=255)
                                                                                                  ccGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGCTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGaaaa                                       <  1:448775/143‑1 (MQ=255)
                                                                                                  ccGAAAATGACCAGCTCACAGGCCTTGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGaaaa                                       <  2:3243/143‑1 (MQ=255)
                                                                                                      aaaTGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGt                                   >  2:111791/1‑143 (MQ=255)
                                                                                                         tGACCAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTGACTAACCCGGTACTTACGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTGACGCGCTTGACAAAAcgcgaaa                                >  2:490952/1‑137 (MQ=255)
                                                                                                          gACCAGGTCACAGGCCTGGGCTGCTTCCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAAc                               <  1:633346/143‑1 (MQ=255)
                                                                                                            ccAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAATGc                             <  2:851950/143‑1 (MQ=255)
                                                                                                             cAGGTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCt                            >  1:436292/1‑143 (MQ=255)
                                                                                                               ggTCACAGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTa                          <  1:458113/143‑1 (MQ=255)
                                                                                                                gccacaGGCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATCCTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTAt                         <  1:40114/141‑1 (MQ=255)
                                                                                                                       gCCTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTCCTTAAGCCAGGGTATACTTGGAATTTGCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCg                  >  1:166267/1‑143 (MQ=255)
                                                                                                                         cTGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGTACACGAATTACGCTTATCCACCCGTg                >  2:346985/1‑143 (MQ=255)
                                                                                                                          tGGGCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGc               <  2:841419/143‑1 (MQ=255)
                                                                                                                            ggCTGTTTGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGa             >  1:629449/1‑143 (MQ=255)
                                                                                                                                 tttGCGTTATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCCGGGTATACTTGTACTTTTCTTACGGTGCACTGTACTGATTTTACGCGCTTGCGAAAACTGTAAACGCTTATCCAGCGGTGCGCTTACg        >  1:352854/1‑143 (MQ=255)
                                                                                                                                 gttGCGTTATCGCCATGTCATTCTCCTTAGGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACg        <  2:640265/142‑1 (MQ=255)
                                                                                                                                       ttATCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGaaaa  <  1:71018/143‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                           
CTACGCCGATAATCCGGGTGTCCGGGTTGAGCTGACCGGCTTTTTCCAGTTGATACAGGGAAGGCAGCAATTTACGACGCGCAAGGTCGCCTTTCGCGCCGAAAATGACCAGGTCACAGGCCTGGGCTGTTTGCGTTACCGCCATGTCATTCTCCTTAAGTTAACTAACCCGGTACTTAAGCCAGGGTATACTTGTAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAA  >  NC_000913/1936170‑1936447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A