Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F97 I0 R1
|
40 |
62.1 |
1065460 |
98.0% |
1044150 |
269.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
NC_000913 |
4,001,645 |
Δ5 bp |
100% |
coding (220‑224/951 nt) |
corA → |
magnesium/nickel/cobalt transporter |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
4001645 |
4001649 |
5 |
75 [0] |
[0] 75 |
corA |
magnesium/nickel/cobalt transporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4001644 | 0 (0.000) | 74 (1.280) |
51/518 |
NT |
100% |
coding (219/951 nt) |
corA |
magnesium/nickel/cobalt transporter |
| ? | NC_000913 |
4001650 = |
0 (0.000) | coding (225/951 nt) |
corA |
magnesium/nickel/cobalt transporter |
GATK/CNVnator alignment
N/A
