Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F1 I0 R1 35 127.6 2210554 97.3% 2150869 271.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 3,909,312 Δ774 bp 100% [pstA]–[pstC] [pstA], [pstC]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3909312 3910085 774 132 [0] [0] 133 [pstA]–[pstC] [pstA],[pstC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39093110 (0.000)124 (1.060) 80/506 NT 100% coding (129/891 nt) pstA phosphate ABC transporter permease
?NC_000913 3910086 = 0 (0.000)coding (313/960 nt) pstC phosphate ABC transporter permease

GATK/CNVnator alignment

N/A