Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F109 I1 R1 19 66.7 2403364 90.9% 2184657 142.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,213,570 Δ48 bp coding (524‑571/1842 nt) rpoD → RNA polymerase, sigma 70 (sigma D) factor

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3213570 3213617 48 51 [0] [0] 51 rpoD RNA polymerase, sigma 70 (sigma D) factor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 32135690 (0.000)47 (0.760) 41/264 0.5 100% coding (523/1842 nt) rpoD RNA polymerase, sigma 70 (sigma D) factor
?NC_000913 3213618 = 0 (0.000)coding (572/1842 nt) rpoD RNA polymerase, sigma 70 (sigma D) factor

GATK/CNVnator alignment

N/A