Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A69 F2000 I3 R1 36 84.1 1889666 90.2% 1704478 220.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007779_cfb 2,468,335 (C)9→10 intergenic (+243/‑123) fadL → / → yfdF long‑chain fatty acid outer membranetransporter/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007779_cfb2,468,3261.C80.4% 93.1 / 24.7 46intergenic (+234/‑132)fadL/yfdFlong‑chain fatty acid outer membranetransporter/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (5/4);  new base C (18/19);  total (23/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.78e-01

TAACTACGCGTTCTGATAACGCGTTCGCCTGGATAAAGTCACCTGCATAGCAGGTGACTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑T‑‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCAGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAATGATGAAGTTAATGGATTAGTACAAGAGTTCAAAAACCTTTTTAAT  >  NC_007779_cfb/2468077‑2468571
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                         
tAACTACGCGTTCTGATAACGCGTTCGCCTGGATAAAGTCACCTGCACAGCAGGTGACTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑t                                                                                                                                                                                                                                                            <  2:508006/250‑1 (MQ=255)
             tGATAACGCGTTCGCCTGGATAAAGTCACCTGACTAGCAGTTGACTTTAACTACCCTACTTCACCTAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAAGCAATAAGCGGTATCCACAGACAAACCTGAATGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCCCAAAGAGTTTACTTTTCTGCATTTCCCGGATAC‑T‑‑c‑ccccccc‑cctgg                                                                                                                                                                                                                                           <  2:913309/250‑5 (MQ=255)
                 aaCGCGTTCGCCTGGATAAAGTCACCTGCATAGCAGGTGACTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGGGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCGCAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTAt                                                                                                                                                                                                                                       <  1:37705/250‑1 (MQ=255)
                    gccttCGCCTGGGGAAAGTCACCGTCATAGCAGGTGGCTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTAAATTTTGCAAACAGCCTGTTGGCATCTTGCCCGTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATAGTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTATTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATtgt                                                                                                                                                                                                                                    <  2:272884/247‑1 (MQ=255)
                      gTTCGCCTGGATAAAGTCACCTGCATAGCAGGTGACTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTgc                                                                                                                                                                                                                                  >  1:262972/1‑250 (MQ=255)
                       ttCGCCTGGATAAAGTCACCTGCATAGCAGGTGACTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑T‑‑C‑CCCCCCC‑C‑TGGCTATTGTgcgc                                                                                                                                                                                                                                >  1:683923/1‑250 (MQ=255)
                                   aaGTCACCTGCATAGCAGGTGACTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCa                                                                                                                                                                                                                     >  1:67489/1‑250 (MQ=255)
                                        aCCNGCNTGGCCGGTAACTGCAACTGCCACACTTCACCGAAAGTAGTTTCCGCATTGCTTACCTCCTGAGTGTTTCAAACAGCCTGTTGGGAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATTC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTa                                                                                                                                                                                                                <  2:768886/250‑1 (MQ=255)
                                                  cAGGTGACTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTTTCCGCTCCTCAACTCAAATTAAAAATAGGtt                                                                                                                                                                                                      >  2:153042/1‑250 (MQ=255)
                                                        gcTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTAGTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaaaa                                                                                                                                                                                                <  2:67489/249‑2 (MQ=255)
                                                              aCTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGa                                                                                                                                                                                          >  2:190037/1‑250 (MQ=255)
                                                                        ttCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTg                                                                                                                                                                                <  1:550181/250‑1 (MQ=255)
                                                                                 agtagtGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaa                                                                                                                                                                                                  <  1:428642/223‑1 (MQ=255)
                                                                                 agtagtGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaa                                                                                                                                                                                                  >  2:428642/1‑223 (MQ=255)
                                                                                   tagtGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGAGTTTTTTGATAGTCTAtct                                                                                                                                                                     >  2:710511/1‑248 (MQ=255)
                                                                                      tgtCCTCAATGCCTAACTCCTGACTTTTGCAACCAGCCTGTTGGCAGCTTGCCCTTTCAAATAAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATCTTTTCAGTCGGTCTGCTCGTCCTCCTCAAAGAGTTTAATTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑CGGCTATTGTGCGCTCATACACTCAAATTAAAGATACGTTCTAACTAACTGAGAGTTTTTTGTTATTCTATTTctt                                                                                                                                                                  >  2:594224/1‑248 (MQ=255)
                                                                                             aTTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTTAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTaa                                                                                                                                                           >  2:862828/1‑250 (MQ=255)
                                                                                              ttGCCTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTGCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACTCGCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAat                                                                                                                                                          <  1:594224/250‑1 (MQ=255)
                                                                                                 cTTACCTCCTGAGTTTTGCAAGCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAatata                                                                                                                                                       >  1:124484/1‑250 (MQ=255)
                                                                                                           gAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTTAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAAc                                                                                                                                             <  1:862828/250‑1 (MQ=255)
                                                                                                               tttGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAaat                                                                                                                                         <  2:262972/250‑1 (MQ=255)
                                                                                                                  gcaatgaGCCTCTTAGCAGCTTGCCCTTACAAAACAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGTCATATTTTCAGGCCTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATTC‑A‑‑C‑CCCCCCCTC‑TTGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTACATTAGGTAATATAGGTTTGTAACAaatcag                                                                                                                                      <  2:124484/244‑2 (MQ=255)
                                                                                                                                  cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑T‑‑C‑CCCCCCC‑C‑‑GGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTa                                                                                                                                               <  2:566904/223‑1 (MQ=255)
                                                                                                                                  cAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑T‑‑C‑CCCCCCC‑C‑‑GGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTa                                                                                                                                               >  1:566904/1‑223 (MQ=255)
                                                                                                                                     cTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAtt                                                                                                                                                                 >  1:180363/1‑204 (MQ=255)
                                                                                                                                     cTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAtt                                                                                                                                                                 <  2:180363/204‑1 (MQ=255)
                                                                                                                                       tGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATg                                                                                                                 <  1:775430/250‑1 (MQ=255)
                                                                                                                                            tttCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑T‑‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACGAATCAATCAAAATGGAATAAAATCATGCTACCa                                                                                                           >  1:519913/1‑250 (MQ=255)
                                                                                                                                                  tgctcttccgtctATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTAt                                                                                                      <  1:825050/238‑1 (MQ=255)
                                                                                                                                                            ggTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑T‑‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATCGAATAAAATCATGCTCCCATCTATTTCAATcaaca                                                                                           <  2:683923/250‑1 (MQ=255)
                                                                                                                                                              tATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGG‑TCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAAt                                                                                         >  2:267221/1‑250 (MQ=255)
                                                                                                                                                               aTCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAAt                                                                                         >  1:216167/1‑250 (MQ=255)
                                                                                                                                                                tCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTAt                                                                                                      >  2:362078/1‑236 (MQ=255)
                                                                                                                                                                tCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTAt                                                                                                      <  1:362078/236‑1 (MQ=255)
                                                                                                                                                                   agananNAACCAGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑T‑‑CACCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGGTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCa                                                                                     <  2:641721/248‑1 (MQ=255)
                                                                                                                                                                      gACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTTTTTCATTAGGTaa                                                                                                                                                           >  1:239338/1‑177 (MQ=255)
                                                                                                                                                                      gACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTaa                                                                                                                                                           <  2:239338/177‑1 (MQ=255)
                                                                                                                                                                      gACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAatatat                                                                                                                                                      <  1:767859/182‑1 (MQ=255)
                                                                                                                                                                      gACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAatatat                                                                                                                                                      >  2:767859/1‑182 (MQ=255)
                                                                                                                                                                        cAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCAGCGCa                                                                                <  1:190037/250‑1 (MQ=255)
                                                                                                                                                                                    gAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑T‑‑C‑CCCCCCC‑CTTGACAATTGTGCGCTCTTCCATCCCAATAAAGGATGGATTCTAAATAAATGAGGGTTTTTTTATAGTCTTTTTTTTTTGGAAATATATATTTCTAACAAATCAACTAAAATGGAATAAAATCATGCTACCATCTATTTCAATTAACAATACAAGCGCAGCTTACCAAGaa                                                                    >  1:814649/1‑250 (MQ=255)
                                                                                                                                                                                     aaaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACCCTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCAGCGCAGCTTACCCAGAAt                                                                   >  2:858881/1‑250 (MQ=255)
                                                                                                                                                                                                      gcgtCTGTTCGTCCTTCTCAAAGAGTTTAATTTTCTGCATTTCCAAGATACAC‑‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGATTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAGTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCAGCGCAGCTTACCCAGAATCAATCAATGAAAATAAc                                                  <  2:814649/247‑1 (MQ=255)
                                                                                                                                                                                                         tCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTtcaat                                                                                                >  1:432310/1‑201 (MQ=255)
                                                                                                                                                                                                         tCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTtcaat                                                                                                <  2:432310/201‑1 (MQ=255)
                                                                                                                                                                                                               cGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑TC‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCAGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAATGATGaa                                         <  1:153042/250‑1 (MQ=255)
                                                                                                                                                                                                                                         tGCATTTCCAGGATAC‑TCCC‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAGTCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCAGCGCAGCTTACCCAGAATCCAGCAATGAAAATAACAatga                                             <  2:684031/221‑1 (MQ=255)
                                                                                                                                                                                                                                         tGCATTTCCAGGATAC‑TCCC‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCAGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAatga                                             >  1:684031/1‑221 (MQ=255)
                                                                                                                                                                                                                                                 cAGGATTC‑T‑‑C‑ACCCCCC‑C‑TGGCTTATGTGCGCTCATACACTCAAATTAAAGATAGGTTATAAAGAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACGAATCAATCAAAATGGAATAAAATCATGCTGACATCTATTTCAATCAACAATACCAGCGCAGCATACCCAGAATCCATCAAGGAAAATAACAATGATGAAGTTAATGGATTAGTACAAGAGTTCAAAAACCtttt      <  2:519913/250‑1 (MQ=255)
                                                                                                                                                                                                                                                     aTAC‑T‑‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCAGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAATGATGAAGTTAATGGATTAGTACAAGAGTTCAAAAACCTTTTTAAt  >  1:829502/1‑250 (MQ=255)
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                         
TAACTACGCGTTCTGATAACGCGTTCGCCTGGATAAAGTCACCTGCATAGCAGGTGACTTTAACTCCCCCACTTCACCGAAAGTAGTGTCCTCATTGCTTACCTCCTGAGTTTTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATAC‑T‑‑C‑CCCCCCC‑C‑TGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCATGCTACCATCTATTTCAATCAACAATACCAGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAATGATGAAGTTAATGGATTAGTACAAGAGTTCAAAAACCTTTTTAAT  >  NC_007779_cfb/2468077‑2468571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A