Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A71 F2000 I2 R1 33 144.3 3157378 93.5% 2952148 216.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_007779_cfb 1,301,041 Δ1,336 bp insC_8–insD_10 insC_8, insD_10

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007779_cfb 1301041–1302367 1302376 10–1336 156 [0] [0] 156 insC_8–insD_10 insC_8,insD_10

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779_cfb = 13010400 (0.000)149 (1.130) 124/416 0.1 100% intergenic (+218/‑90) ychE/insC_8 inner membrane protein/IS2 element protein
?NC_007779_cfb 1302377 = 0 (0.000)intergenic (+19/‑519) insD_10/oppA IS2 element protein/oligopeptide transporter subunit

GATK/CNVnator alignment

N/A