Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F8 I1 R1
|
25 |
114.0 |
2452592 |
94.1% |
2307889 |
219.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_007779_cfb |
1,301,041 |
Δ1,336 bp |
|
insC_8–insD_10 |
insC_8, insD_10 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_007779_cfb |
1301041–1302367 |
1302376 |
10–1336 |
102 [0] |
[0] 106 |
insC_8–insD_10 |
insC_8,insD_10 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_007779_cfb |
= 1301040 | 0 (0.000) | 97 (0.930) |
85/422 |
0.3 |
100% |
intergenic (+218/‑90) |
ychE/insC_8 |
inner membrane protein/IS2 element protein |
| ? | NC_007779_cfb |
1302377 = |
0 (0.000) | intergenic (+19/‑519) |
insD_10/oppA |
IS2 element protein/oligopeptide transporter subunit |
GATK/CNVnator alignment
N/A
