Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,256,893 |
+C |
coding (405/423 nt) |
yhaQ ← |
putative L‑serine dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,256,891 | 1 | . | C | 98.0%
| 395.6
/ 2.0
| 148 | coding (407/423 nt) | yhaQ | putative L‑serine dehydratase |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base C (73/71); total (75/73) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 |
Only 100 of 162 total aligned reads displayed.
CAGGCCGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGT‑CCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCTT > NC_000913/3256816‑3256961
|
cAGGCCGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGt < 1:491317/76‑1 (MQ=255)
aGGCCGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGT‑c > 2:3830090/1‑76 (MQ=255)
ggCCTAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGT‑cc < 1:192106/76‑1 (MQ=255)
ggCCGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGT‑cc > 1:2019971/1‑76 (MQ=255)
ccGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGT‑ccct > 1:4002522/1‑74 (MQ=255)
cGAAGTGTTGTTCGTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGGTCTTCCTGT‑ccctt < 2:7458/76‑4 (MQ=255)
cGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGGCAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGT‑ccctt < 2:2775251/76‑4 (MQ=255)
cGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGT‑ccctt < 1:5760252/76‑4 (MQ=255)
aGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCa < 1:1579038/76‑1 (MQ=255)
aGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCa < 1:1601863/76‑1 (MQ=255)
aGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCa < 1:2058612/76‑1 (MQ=255)
gtgtTCTTCTTCGACAATAAGCCCGCCGCCGACAGAGTAATAGGTTTTCCTTAATAGCTCTTCCTGTCCCTTCCAg < 1:526911/76‑1 (MQ=255)
tgtTCTCCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAgg < 2:297764/76‑1 (MQ=255)
gtgcttcttcGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGc < 2:796111/73‑1 (MQ=255)
gtTCTTCTTCGACAATAACCCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGc < 1:832034/76‑1 (MQ=255)
ttcttcGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTg < 1:4224735/76‑1 (MQ=255)
ttcttcGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTg < 2:3307969/76‑1 (MQ=255)
tcttcGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGa > 2:4001055/1‑76 (MQ=255)
ttcGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATc > 1:4965802/1‑76 (MQ=255)
ttcGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATc > 1:1339365/1‑76 (MQ=255)
tcGACAAGAACCCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATcc < 1:185919/76‑1 (MQ=255)
tgACAATAAACCCGACGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGACCCg > 2:1568914/2‑76 (MQ=255)
aCAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCa < 2:1855542/76‑1 (MQ=255)
aCAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTGCCAGGCAGTGATCCGCa > 2:152189/1‑76 (MQ=255)
cAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCAt > 1:4573145/1‑76 (MQ=255)
cAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCAt > 2:2311219/1‑76 (MQ=255)
aaTAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCAtt > 2:3449833/1‑76 (MQ=255)
aTAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTc < 2:2932812/76‑1 (MQ=255)
tAACCCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTcc < 1:4759792/76‑1 (MQ=255)
accccGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGt < 2:1422092/74‑1 (MQ=255)
aCCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGtt > 2:5297580/1‑76 (MQ=255)
cccGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCCGGCAGTGATCCGCATTCCGTtc > 2:3678764/1‑76 (MQ=255)
cccGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTtc < 1:5299369/76‑1 (MQ=255)
cccGCCGCCGACAGAGTAATAGGGTTTACTTAATAGCTCTTCCTGTCCCCTCCAGGCAGTGATCCGCATTCCGCtc > 1:2960040/1‑76 (MQ=255)
cgccgccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTtctc > 1:4339969/1‑76 (MQ=255)
ccgccgACCGCGTAATCGGTTTTACTTAATAGCTCTTCCTGTCCCTCCCCTGCCGTTACCCGCCATCCGTTCTCAt > 2:885797/1‑76 (MQ=255)
ccgccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCAt < 1:2884617/76‑1 (MQ=255)
ccgccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCAt > 1:2434157/1‑76 (MQ=255)
ccgccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCAt < 2:4163247/76‑1 (MQ=255)
ccgccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCAt < 1:1274098/76‑1 (MQ=255)
ccgccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTCCCAGGCAGTGATCCGCATTCCGTTCTCAt > 2:848149/1‑76 (MQ=255)
cgccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATg > 1:3760681/1‑76 (MQ=255)
cgccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATg < 1:876710/76‑1 (MQ=255)
cgccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATg < 1:5614100/76‑1 (MQ=255)
cgccgACAGAGTAATAGGTGTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGAGCCGCATTCCGTTCTCATg > 1:2666357/1‑76 (MQ=255)
gccgACAGAGTCATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCCGGCAGTGATCCGACTTACGTTCTCAttg > 1:4176653/1‑74 (MQ=255)
gccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCTGGCAGTGATCCGCATTCCGTTCTCATgg > 1:1081528/1‑76 (MQ=255)
ccgACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGc < 2:2694257/76‑1 (MQ=255)
gACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGa > 1:5741914/1‑76 (MQ=255)
gACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTACGTTCTCATGGCGa > 1:2181241/1‑76 (MQ=255)
aacgagTAATCGGTTTTGCTTAATATCTCTTCCTGTACCGTCCAGGCGGTGATCCGCATTCCGTTCTCATGGCGAg < 1:2550172/73‑1 (MQ=255)
aCAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAg < 1:2548181/76‑1 (MQ=255)
cAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGGTCTCATGGCGAgg > 1:4979492/1‑76 (MQ=255)
agagTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGc > 1:1507196/1‑76 (MQ=255)
agagTAATAGGTTTTACTTAATAGCTCTTACTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGc > 1:1282734/1‑76 (MQ=255)
gagTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCa > 1:4706647/1‑76 (MQ=255)
agTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCaa < 2:1403715/76‑1 (MQ=255)
gTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAAc > 1:4486461/1‑76 (MQ=255)
tAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACa > 1:4499200/1‑76 (MQ=255)
tAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCCCCTGGCGAGGCaaac > 2:5287246/1‑74 (MQ=255)
aaTAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACAt > 2:3173458/1‑76 (MQ=255)
aaTAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACAt > 1:1449301/1‑76 (MQ=255)
aTAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACAtt < 1:1034877/76‑1 (MQ=255)
tAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTTATCCGCATTCCGTTCTCATGGCGAGGCAACAttt > 1:3524284/1‑76 (MQ=255)
tAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACAttt < 2:2019971/76‑1 (MQ=255)
tAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACAttt < 1:2876518/76‑1 (MQ=255)
tAGGGTTTACTTAATAGCTCGGCCTGTCCCTTGCAGGCAGTGGTCCGCATTCCGTTCTCATGGCGAGGCAACAttt > 2:1339818/1‑76 (MQ=255)
aGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTc < 1:3657584/76‑1 (MQ=255)
aGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTc < 2:4342254/76‑1 (MQ=255)
aGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTc > 2:2504489/1‑76 (MQ=255)
aGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTc < 1:5108809/76‑1 (MQ=255)
gTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCgg < 2:3480486/76‑1 (MQ=255)
ttttACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCggg < 2:2884084/76‑1 (MQ=255)
ttttACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCggg > 1:3235108/1‑76 (MQ=255)
tttACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGCGGCAACATTTCGGGa > 2:5720656/1‑76 (MQ=255)
tttACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGa < 2:4414097/76‑1 (MQ=255)
ttACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGAt < 1:3339048/76‑1 (MQ=255)
ttACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGAt < 1:3449833/76‑1 (MQ=255)
ttACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGAt > 1:3519157/1‑76 (MQ=255)
tACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGTATg > 2:1107168/1‑76 (MQ=255)
tACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATg > 2:5252707/1‑76 (MQ=255)
tACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATg > 2:652264/1‑76 (MQ=255)
aCTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATgg > 2:3587647/1‑76 (MQ=255)
aCTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATgg > 2:3598509/1‑76 (MQ=255)
aCTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATgg < 1:1768861/76‑1 (MQ=255)
ttAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGaa < 1:2229100/76‑1 (MQ=255)
tAATAGCTCTGACTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAg < 2:147790/76‑1 (MQ=255)
aaTAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGa > 1:851602/1‑76 (MQ=255)
aTAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGAt < 2:4717499/76‑1 (MQ=255)
aTAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGAt < 2:4821922/76‑1 (MQ=255)
tAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATa < 2:3535863/76‑1 (MQ=255)
aGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATaa > 1:3051169/1‑76 (MQ=255)
ctctTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATg > 1:2063380/1‑76 (MQ=255)
ctctTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATg < 2:2439120/76‑1 (MQ=255)
tctTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGt < 2:1416696/76‑1 (MQ=255)
ttCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTc < 2:1952428/76‑1 (MQ=255)
ttCCTGTCCCTTCCAGGAAGTGATCCGCATTCCGTTCTCATAGAGAGGCGACATTTCGGGATGGAAGATAATGtta > 1:5146136/1‑75 (MQ=255)
tCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCt < 1:5458413/76‑1 (MQ=255)
ccTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCtt < 2:1993853/76‑1 (MQ=255)
ccTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCtt > 1:994153/1‑76 (MQ=255)
|
CAGGCCGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGT‑CCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCTT > NC_000913/3256816‑3256961
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
