Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,257,838 |
+G |
coding (2222/2241 nt) |
tdcE ← |
putative formate acetyltransferase 3 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,257,837 | 1 | . | G | 98.7%
| 417.2
/ ‑1.4
| 154 | coding (2223/2241 nt) | tdcE | putative formate acetyltransferase 3 |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (66/85); total (68/86) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 169 total aligned reads displayed.
GGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAC‑G‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCATCCAGCAGCATTT > NC_000913/3257762‑3257907
|
ggCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAc < 2:5101066/76‑1 (MQ=255)
ggCGTCAGAGCGCCTGGGTAAAGGGACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAc > 2:2906847/1‑76 (MQ=255)
gCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAc‑g < 1:5733368/76‑1 (MQ=255)
gCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAc‑g < 2:3902813/76‑1 (MQ=255)
cGTCAGAGCGCCTGGGCAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAc‑gg > 2:2141354/1‑75 (MQ=255)
gTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAc‑ggc > 1:1203018/1‑74 (MQ=255)
tCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAc‑ggcg < 2:2746049/76‑4 (MQ=255)
gagCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAg < 2:525489/76‑1 (MQ=255)
gcgcCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGcc < 2:4620980/76‑1 (MQ=255)
cgcCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCa < 1:3872663/76‑1 (MQ=255)
cgcCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCa > 2:5019990/1‑76 (MQ=255)
cgcCTGGGTAAAGGGCCGTGACATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTGGAAGCTCACGG‑CGTAGCCa > 2:5045466/1‑76 (MQ=255)
gcCTGGTTAAAGGAACGTGAAATAACAGCCTGTTGCCCTTCACGGGTCAGTGCGTCGAAGCGCACTG‑CGTCGCCag > 2:5321514/1‑76 (MQ=255)
gcCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCag > 2:251036/1‑76 (MQ=255)
cTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCagag > 2:1374450/1‑76 (MQ=255)
cTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCagag < 2:1175675/76‑1 (MQ=255)
tGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAgaga > 2:2586356/1‑76 (MQ=255)
tGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAgaga < 1:4274468/76‑1 (MQ=255)
gggTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGac < 2:1494504/76‑1 (MQ=255)
gggaaaGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAACCGCACGG‑CGTAGCCCGAGaca > 2:1215876/4‑76 (MQ=255)
ggTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGaca > 1:2856937/1‑76 (MQ=255)
ggTAAAGGTACGTGAAATAAAATCCTGTTGCTGTTCGCGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGaca > 1:5002645/1‑76 (MQ=255)
tAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACg < 1:1894702/76‑1 (MQ=255)
aaaGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCCGTGCGTTGAAGCGCACGG‑TGTAGCCAGAGACACgg > 1:5041599/1‑76 (MQ=255)
aaGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCTCACGG‑CGTAGCCAGAGACACGGa < 1:3348164/76‑1 (MQ=255)
aGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGAt < 1:955601/76‑1 (MQ=255)
ggTACGTGAAATAGCATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGAtt < 1:3157963/76‑1 (MQ=255)
ggTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGAtt < 2:4636238/76‑1 (MQ=255)
ggTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGAtt > 1:2284567/1‑76 (MQ=255)
ggTACGTGAAATAACATCCTGCTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGAtt > 1:3602103/1‑76 (MQ=38)
gTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTg > 2:5726427/1‑76 (MQ=255)
gTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAC‑GCCGTAGCCAGAGCAACGGCTTg > 2:5556286/1‑76 (MQ=255)
tACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGt > 2:4435533/1‑76 (MQ=255)
aCGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCagag > 1:1526062/1‑64 (MQ=255)
aCGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTc < 1:2742098/76‑1 (MQ=255)
aCGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTc > 2:5424947/1‑76 (MQ=255)
cGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCa < 2:4054527/76‑1 (MQ=255)
gTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAg > 1:4358909/1‑76 (MQ=255)
gTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAg > 1:5800316/1‑76 (MQ=255)
gTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAg > 1:5567321/1‑76 (MQ=255)
gTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAg > 1:5683078/1‑76 (MQ=255)
tGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAgg > 2:1703753/1‑76 (MQ=255)
tGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAgg < 2:4135719/76‑1 (MQ=255)
tGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAgg < 1:407756/76‑1 (MQ=255)
gAAATAACATCCTGTTGCTGTTCGCGGGTCAGTGCGTTGCAGCGCGC‑GTCGTAGCCAGAGACACGGCTTGTCAGGt < 2:2159189/76‑1 (MQ=255)
gAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGt < 1:251036/76‑1 (MQ=255)
aaaTAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGtt > 2:2681813/1‑76 (MQ=255)
aaaTAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGtt > 2:4036785/1‑76 (MQ=255)
aagaaCATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTa < 2:5165666/73‑1 (MQ=255)
aTAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAg > 1:4379264/1‑76 (MQ=255)
aTAACATCCTGTTGCTGTTCACGGGTCAGTGAGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAg > 2:1936631/1‑76 (MQ=255)
aCATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGat > 1:1972303/1‑76 (MQ=255)
cATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGata < 1:82699/76‑1 (MQ=255)
cATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGata < 2:2061842/76‑1 (MQ=255)
tCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATAtt < 1:1631250/76‑1 (MQ=255)
tCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATAtt < 2:662089/76‑1 (MQ=255)
ccTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATAttt < 1:5004050/76‑1 (MQ=255)
ccTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATAttt < 1:3623664/76‑1 (MQ=255)
tGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATAttttt < 2:5379791/76‑1 (MQ=255)
tGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATAttttt < 2:1599000/76‑1 (MQ=255)
gTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTc < 2:3424670/76‑1 (MQ=255)
gTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTc < 1:3375098/76‑1 (MQ=255)
ttGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTcc < 2:4403710/76‑1 (MQ=255)
tGCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCg < 1:3760472/76‑1 (MQ=255)
gCTGTTCTCGGGTCAGTGCGTTGAAGCGCACGG‑CGTCGCCCGCGACACGGATTGCAAGGTCAGGACATTTCTTCgg > 1:918957/1‑76 (MQ=255)
gCTGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCgg > 1:5229957/1‑76 (MQ=255)
acTGTTCACGGGTCAGTGCGTTGATGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTcctg < 1:1949039/75‑3 (MQ=255)
tGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCgggg > 1:2034455/1‑75 (MQ=255)
tGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGt > 2:1475770/1‑76 (MQ=255)
tGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGt > 2:4508790/1‑76 (MQ=255)
tGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGt > 1:2583653/1‑76 (MQ=255)
tGTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGt < 1:4704284/76‑1 (MQ=255)
tGTTCACGGGTCAGAGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCACGTGAGGGTCTTTCTCCcggg > 2:36392/1‑75 (MQ=255)
gTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTc < 2:3031640/70‑1 (MQ=255)
gTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTc > 1:3031640/1‑70 (MQ=255)
gTTCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTg > 1:3327521/1‑76 (MQ=255)
ttCACGGGTCAGTGTGTTTCACCGCACGG‑CGTAGCCATATACACGGATTGTCATTTTAGGATATTTTTCCGGGTGc < 1:794134/76‑1 (MQ=16)
ttCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCggggcc > 2:5530531/1‑73 (MQ=37)
ttCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGc > 1:2225415/1‑76 (MQ=255)
ttCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGc > 1:1035126/1‑76 (MQ=255)
tCACGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCt > 1:2650889/1‑76 (MQ=255)
aaCGTGTCAGTGCGTTGAAGCGCGCGG‑CATCGACATAATCACGGTTTGTCACGTTAAGATATCTTTCCTAGTGCTc < 2:2075198/75‑1 (MQ=255)
cGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGa < 2:4311299/76‑1 (MQ=255)
cGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGa > 2:2156611/1‑76 (MQ=255)
cGGGTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGa < 1:1706270/76‑1 (MQ=255)
gggTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGGTCGAt > 2:757267/1‑76 (MQ=38)
gggTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGAt < 1:3103798/76‑1 (MQ=255)
ggTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATg > 2:1867740/1‑76 (MQ=255)
ggTCAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATg < 1:1288513/76‑1 (MQ=255)
gcggTGCGTGGAGGGGCACGG‑GGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGc < 2:228877/73‑1 (MQ=25)
cAGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGCTAGGATATTTTTCCGGGTGCTCGATGGCa > 1:4109406/1‑76 (MQ=38)
aGTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCAt < 2:1712936/76‑1 (MQ=255)
gTGCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCATc > 1:4135516/1‑76 (MQ=255)
gCGTTGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCATCca < 1:4036786/76‑1 (MQ=255)
ttGCAGCGCCCGG‑CGTAGCCCGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGTGTCcagcc < 1:5432848/76‑2 (MQ=25)
ttGAAGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCATCcagca < 1:1585944/76‑1 (MQ=255)
aaGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCATCCAgcagca < 1:3988033/76‑1 (MQ=255)
aaGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCATCCAgcagca < 2:4324103/76‑1 (MQ=255)
aGCGCACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCATCCAGCAGCAt < 2:3687598/76‑1 (MQ=255)
cgcACGG‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCATCCAGCAGCAttt < 1:1734585/76‑1 (MQ=255)
|
GGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGTGCGTTGAAGCGCAC‑G‑CGTAGCCAGAGACACGGATTGTCAGGTTAGGATATTTTTCCGGGTGCTCGATGGCATCCAGCAGCATTT > NC_000913/3257762‑3257907
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
