Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,430,453 |
+C |
coding (745/747 nt) |
smf ← |
putative Rossmann‑fold nucleotide‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,430,453 | 1 | . | C | 98.2%
| 295.5
/ ‑1.0
| 108 | coding (745/747 nt) | smf | putative Rossmann‑fold nucleotide‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (61/45); total (62/46) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 116 total aligned reads displayed.
GTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑G‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTC > NC_000913/3430378‑3430522
|
gTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑g > 1:5283571/1‑76 (MQ=255)
gTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑g < 1:3994824/76‑1 (MQ=255)
gTCACAAGAATAGCTCCTTGTTTTATTAACCAGTGAGGGCCTTCGCTTCGCGGATTCCCTATTGGACCTGGCAAg‑g < 2:2103329/76‑1 (MQ=255)
tCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑gc > 2:4281977/1‑75 (MQ=255)
tCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCGATTGGACCTGGCAAg‑gc > 2:681476/1‑75 (MQ=255)
cacaAGAATCGCGCCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑gca < 2:2278585/76‑3 (MQ=255)
caAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑G‑caaa > 2:1210039/1‑76 (MQ=255)
aaGAATCGCACCTTGTTTTAGTAACCAGTGAGGCCCTTCGCTTCCCGGATTACCTATTGGACCCGGCAAT‑G‑caaaa > 2:517608/1‑76 (MQ=255)
gAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAAc > 2:4514614/1‑76 (MQ=255)
gAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAAc < 1:3889106/76‑1 (MQ=255)
aaTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACt < 2:917543/76‑1 (MQ=255)
aaTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACt > 2:4236772/1‑76 (MQ=255)
aTCGCACCTTGTTTTATTAACCATTGAGGCCCTTCGCTTCGCTGATTCCCTATTGGAGCTGGCAAG‑G‑CAACACttt < 1:4729393/76‑2 (MQ=255)
aTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACtt < 2:3456204/76‑1 (MQ=255)
cGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTtct < 1:425952/76‑1 (MQ=255)
gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTtctc > 1:3856346/1‑76 (MQ=255)
gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTtctc < 2:560946/76‑1 (MQ=255)
gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTtctc > 1:3256546/1‑76 (MQ=255)
cgccTTGTTTTATTAGCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGATCTGGCAAG‑GCAAATACTTCTCg < 2:3649188/74‑1 (MQ=255)
cACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCg > 1:3766467/1‑76 (MQ=255)
cccTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGc < 2:908286/75‑1 (MQ=255)
aCCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGc < 2:5091390/76‑1 (MQ=255)
ccTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGcc < 2:1052032/76‑1 (MQ=255)
ccTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGcc < 1:2730185/76‑1 (MQ=255)
tGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAACCTTCTCGCCCCt < 1:1269183/76‑1 (MQ=255)
tGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCt < 2:2973616/76‑1 (MQ=255)
gTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTg < 2:5647958/76‑1 (MQ=255)
gTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTg < 2:2709633/76‑1 (MQ=255)
ttttATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCCGc > 2:5215622/1‑76 (MQ=255)
tttATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCt > 2:5396549/1‑76 (MQ=255)
ttattaACCAGTGAGGCCCTTCTCTTCACGGATTCCCTCTTGGACCCGGCAAGCC‑CCACCCTTCTCGCCCCTGcac > 2:1242195/1‑74 (MQ=255)
ttattaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTc > 2:1230767/1‑76 (MQ=255)
tattaACCAGTGAGGCCCTTCGCTTCCAGGCTTCCATATTGGACCTGGTAAG‑GCAAAAACGTCTCGCACCAGCtaa > 1:2883873/1‑74 (MQ=255)
attaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAACAACTTCTCGCCCCTGCTcca > 2:5317414/1‑74 (MQ=255)
attaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCaa < 2:2175693/76‑1 (MQ=255)
attaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCaa > 2:4266701/1‑76 (MQ=255)
taACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCACgc > 2:3031537/1‑76 (MQ=255)
taACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAgc < 1:5463557/76‑1 (MQ=255)
taACCAGTGAGGCCCTTCGCGTCACGGATTCCCTATGGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCGGCTCAAgc < 2:4524192/76‑1 (MQ=255)
aaCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAgcg > 2:4078843/1‑76 (MQ=255)
aCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCACgcgc > 2:2216896/1‑76 (MQ=255)
aCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGATCAAgcgc > 1:853319/1‑76 (MQ=255)
ccAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGca > 2:2020636/1‑76 (MQ=255)
ccAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGca < 2:2347321/76‑1 (MQ=255)
aGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGcaca > 2:2142279/1‑76 (MQ=255)
aGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGcaca > 1:2758582/1‑76 (MQ=255)
tGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCTCCCTCGCTCAAGCGCACAAc > 2:1823785/1‑76 (MQ=255)
tGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAAc < 1:2319114/76‑1 (MQ=255)
tGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAAc > 2:2400059/1‑76 (MQ=255)
gAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACg < 1:4578239/76‑1 (MQ=255)
gAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACg > 1:3165291/1‑76 (MQ=255)
gAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACg < 1:2598797/76‑1 (MQ=255)
aGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGt > 1:551265/1‑76 (MQ=255)
cccTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCt > 1:5726328/1‑76 (MQ=255)
cccTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGAGCACAACGTGCt > 2:4288242/1‑76 (MQ=255)
ccTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTAGCCCCTGCTCAAGCGCACAACGTGCTg < 1:3079490/76‑1 (MQ=255)
cTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGc < 2:4458867/73‑1 (MQ=255)
cTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGc > 1:4458868/1‑73 (MQ=255)
ttCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTc < 1:846505/76‑1 (MQ=255)
ttCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGCGCTGTc > 2:1481093/1‑76 (MQ=255)
ttCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACCTGCTGTc > 2:5516756/1‑76 (MQ=255)
cGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAc > 2:799640/1‑76 (MQ=255)
cGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAc < 1:5278545/76‑1 (MQ=255)
gCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAcc > 1:122438/1‑76 (MQ=255)
gCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAcc > 1:3900509/1‑76 (MQ=255)
ttCCCGGCTTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAg > 2:1656076/1‑76 (MQ=255)
ttCCCGGATTCCCTCTTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAg > 2:3940469/1‑76 (MQ=255)
cGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGac > 2:793575/1‑75 (MQ=255)
cGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGaa > 1:4341746/1‑76 (MQ=255)
cGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGaa > 1:2183957/1‑76 (MQ=255)
ggATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCa > 1:5225836/1‑70 (MQ=255)
ggATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCa < 2:5225835/70‑1 (MQ=255)
ggATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAAc < 2:3091157/76‑1 (MQ=255)
gATTCCCTATTGGACCTGGCAAG‑GCAAGAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAGcc < 2:360912/76‑1 (MQ=255)
gATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAAcc > 1:2810762/1‑76 (MQ=255)
tCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCAcc > 2:687624/1‑75 (MQ=255)
tCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACt < 1:1757330/76‑1 (MQ=255)
tCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACt > 2:4444494/1‑76 (MQ=255)
cccTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTa > 1:1171006/1‑76 (MQ=255)
ccTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAc > 1:4226244/1‑76 (MQ=255)
cTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACg < 1:4569290/76‑1 (MQ=255)
tATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCACGCGCACAACGTGCTGTCACCAGCGAACCACTACGc > 2:5299861/1‑76 (MQ=255)
tATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAccc > 2:386862/1‑74 (MQ=255)
cttGGACCAGGCAAG‑TCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCa < 1:1210039/75‑1 (MQ=255)
aTTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCa > 1:4830113/1‑76 (MQ=255)
aTTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCa > 2:1894114/1‑76 (MQ=255)
tGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaaa < 1:505750/76‑1 (MQ=255)
ggACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAg > 1:3037120/1‑76 (MQ=255)
ggACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAg > 1:1756509/1‑76 (MQ=255)
ggACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAg < 1:1238257/76‑1 (MQ=255)
ggACCTGGCAAG‑GCAAAAACTTCTCGCCCATGCTCAAGCGCATAACGTGCTGACACCTGCGAACAACGACGTAAAg > 2:1823709/1‑76 (MQ=255)
aCCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGcc < 1:4236773/76‑1 (MQ=255)
aCCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGcc < 1:4720668/76‑1 (MQ=255)
ccTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCATCAGCGAAACACTCCGCAAAGCCg > 1:4695507/1‑76 (MQ=255)
ccTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCg > 2:3494050/1‑76 (MQ=255)
cTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGc < 1:4651995/76‑1 (MQ=255)
tGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGNGAACCACTACGCAAAGCCGCt < 1:4078844/76‑1 (MQ=255)
tGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCt > 1:2233279/1‑76 (MQ=255)
gCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTc > 2:3981241/1‑76 (MQ=255)
gCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTc > 2:3775286/1‑76 (MQ=255)
|
GTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑G‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTC > NC_000913/3430378‑3430522
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
